RNA–Protein interactions for RNA: ENST00000560975.5

TPM1-228, Transcript of tropomyosin 1, humanhuman

TSL 5

Gene TPM1, Length 2,855 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-228ENST00000560975 TRMT2AQ8IZ69 625 aaKnown RBP21.13■□□□□ 0.97
TPM1-228ENST00000560975 PTPRGP23470 1445 aa21.13■□□□□ 0.97
TPM1-228ENST00000560975 NKTRP30414 1462 aaKnown RBP21.12■□□□□ 0.97
TPM1-228ENST00000560975 AMER1Q5JTC6 1135 aaPredicted RBP21.12■□□□□ 0.97
TPM1-228ENST00000560975 UPF2Q9HAU5 1272 aaKnown RBP21.12■□□□□ 0.97
TPM1-228ENST00000560975 PLEKHD1A6NEE1 506 aa21.11■□□□□ 0.97
TPM1-228ENST00000560975 GLIPR1L2Q4G1C9 344 aa21.11■□□□□ 0.97
TPM1-228ENST00000560975 VSIG10Q8N0Z9 540 aa21.11■□□□□ 0.97
TPM1-228ENST00000560975 DNAJC5BQ9UF47 199 aa21.11■□□□□ 0.97
TPM1-228ENST00000560975 FAM135AQ9P2D6 1515 aa21.1■□□□□ 0.97
TPM1-228ENST00000560975 PRDM15P57071 1507 aaPredicted RBP21.1■□□□□ 0.97
TPM1-228ENST00000560975 CDC42BPAQ5VT25 1732 aa21.1■□□□□ 0.97
TPM1-228ENST00000560975 EIF4G3O43432 1585 aaKnown RBP21.1■□□□□ 0.97
TPM1-228ENST00000560975 CGNL1Q0VF96 1302 aa21.1■□□□□ 0.97
TPM1-228ENST00000560975 NLRP1Q9C000 1473 aa21.09■□□□□ 0.97
TPM1-228ENST00000560975 E9PSI1 815 aa21.08■□□□□ 0.97
TPM1-228ENST00000560975 VIRMAQ69YN4 1812 aaKnown RBP21.08■□□□□ 0.96
TPM1-228ENST00000560975 SHANK2Q9UPX8 1470 aa21.08■□□□□ 0.96
TPM1-228ENST00000560975 MCM4P33991 863 aa21.07■□□□□ 0.96
TPM1-228ENST00000560975 TBC1D32Q96NH3 1257 aa21.07■□□□□ 0.96
TPM1-228ENST00000560975 CENPJQ9HC77 1338 aaPredicted RBP21.06■□□□□ 0.96
TPM1-228ENST00000560975 HSP90AA2PQ14568 343 aaPredicted RBP21.06■□□□□ 0.96
TPM1-228ENST00000560975 WDR7Q9Y4E6 1490 aa21.06■□□□□ 0.96
TPM1-228ENST00000560975 HSP90AA1P07900 732 aaKnown RBP21.06■□□□□ 0.96
TPM1-228ENST00000560975 PLA2R1Q13018 1463 aa21.05■□□□□ 0.96
TPM1-228ENST00000560975 PDE3AQ14432 1141 aa21.05■□□□□ 0.96
TPM1-228ENST00000560975 FSD2A1L4K1 749 aa21.05■□□□□ 0.96
TPM1-228ENST00000560975 CLCN1P35523 988 aa21.05■□□□□ 0.96
TPM1-228ENST00000560975 ADCY10Q96PN6 1610 aa21.04■□□□□ 0.96
TPM1-228ENST00000560975 TNNQ9UQP3 1299 aa21.03■□□□□ 0.96
TPM1-228ENST00000560975 NEUROD2Q15784 382 aa21.03■□□□□ 0.96
TPM1-228ENST00000560975 ZMYND15Q9H091 742 aa21.03■□□□□ 0.96
TPM1-228ENST00000560975 PDZRN3Q9UPQ7 1066 aa21.03■□□□□ 0.96
TPM1-228ENST00000560975 PCDHB15Q9Y5E8 787 aa21.02■□□□□ 0.96
TPM1-228ENST00000560975 TRAK2O60296 914 aa21.02■□□□□ 0.95
TPM1-228ENST00000560975 BCL2L13Q9BXK5 485 aa21■□□□□ 0.95
TPM1-228ENST00000560975 FBLN2P98095 1184 aa20.99■□□□□ 0.95
TPM1-228ENST00000560975 CLASP1Q7Z460 1538 aa20.99■□□□□ 0.95
TPM1-228ENST00000560975 PMFBP1Q8TBY8 1022 aa20.98■□□□□ 0.95
TPM1-228ENST00000560975 RLBP1P12271 317 aa20.98■□□□□ 0.95
TPM1-228ENST00000560975 ABCC10Q5T3U5 1492 aa20.97■□□□□ 0.95
TPM1-228ENST00000560975 RRP7AQ9Y3A4 280 aaKnown RBP20.97■□□□□ 0.95
TPM1-228ENST00000560975 PIK3C2GO75747 1445 aa20.97■□□□□ 0.95
TPM1-228ENST00000560975 LAMC1P11047 1609 aa20.97■□□□□ 0.95
TPM1-228ENST00000560975 MFAP1P55081 439 aaKnown RBP20.97■□□□□ 0.95
TPM1-228ENST00000560975 MAGI1Q96QZ7 1491 aaPredicted RBP20.96■□□□□ 0.95
TPM1-228ENST00000560975 CHMP5Q9NZZ3 219 aa20.95■□□□□ 0.94
TPM1-228ENST00000560975 ASXL1Q8IXJ9 1541 aa20.95■□□□□ 0.94
TPM1-228ENST00000560975 MRE11P49959 708 aa20.95■□□□□ 0.94
TPM1-228ENST00000560975 WWC1Q8IX03 1113 aa20.95■□□□□ 0.94
TPM1-228ENST00000560975 MYH16Q9H6N6 1097 aa20.95■□□□□ 0.94
TPM1-228ENST00000560975 MYO5CQ9NQX4 1742 aa20.95■□□□□ 0.94
TPM1-228ENST00000560975 GRIN2AQ12879 1464 aa20.94■□□□□ 0.94
TPM1-228ENST00000560975 RRP9O43818 475 aaKnown RBP20.94■□□□□ 0.94
TPM1-228ENST00000560975 GRPEL1Q9HAV7 217 aa20.94■□□□□ 0.94
TPM1-228ENST00000560975 CCDC141Q6ZP82 1450 aa20.93■□□□□ 0.94
TPM1-228ENST00000560975 EIF2AK4Q9P2K8 1649 aaKnown RBP20.93■□□□□ 0.94
TPM1-228ENST00000560975 CDCA8Q53HL2 280 aa20.93■□□□□ 0.94
TPM1-228ENST00000560975 C22orf23Q9BZE7 217 aa20.93■□□□□ 0.94
TPM1-228ENST00000560975 ERBB4Q15303 1308 aa20.92■□□□□ 0.94
TPM1-228ENST00000560975 RARSP54136 660 aaKnown RBP20.92■□□□□ 0.94
TPM1-228ENST00000560975 ESPNB1AK53 854 aa20.91■□□□□ 0.94
TPM1-228ENST00000560975 CHMP7Q8WUX9 453 aaPredicted RBP20.91■□□□□ 0.94
TPM1-228ENST00000560975 ABCC2Q92887 1545 aa20.91■□□□□ 0.94
TPM1-228ENST00000560975 NINLQ9Y2I6 1382 aa20.9■□□□□ 0.94
TPM1-228ENST00000560975 NUP160Q12769 1436 aa20.9■□□□□ 0.94
TPM1-228ENST00000560975 RWDD1Q9H446 243 aaPredicted RBP20.9■□□□□ 0.94
TPM1-228ENST00000560975 ATP10BO94823 1461 aa20.89■□□□□ 0.93
TPM1-228ENST00000560975 JPH4Q96JJ6 628 aa20.89■□□□□ 0.93
TPM1-228ENST00000560975 SYNJ2O15056 1496 aa20.88■□□□□ 0.93
TPM1-228ENST00000560975 TNNT2P45379 298 aaPredicted RBP20.88■□□□□ 0.93
TPM1-228ENST00000560975 TRIM44Q96DX7 344 aaPredicted RBP20.87■□□□□ 0.93
TPM1-228ENST00000560975 ARHGEF5Q12774 1597 aa20.86■□□□□ 0.93
TPM1-228ENST00000560975 CARMIL2Q6F5E8 1435 aa20.86■□□□□ 0.93
TPM1-228ENST00000560975 HSCBQ8IWL3 235 aa20.86■□□□□ 0.93
TPM1-228ENST00000560975 SYNMO15061 1565 aa20.85■□□□□ 0.93
TPM1-228ENST00000560975 DDX11L8A8MPP1 907 aa20.84■□□□□ 0.93
TPM1-228ENST00000560975 CARD14Q9BXL6 1004 aa20.83■□□□□ 0.93
TPM1-228ENST00000560975 GAS2L3Q86XJ1 694 aa20.83■□□□□ 0.92
TPM1-228ENST00000560975 SAMD9LQ8IVG5 1584 aa20.82■□□□□ 0.92
TPM1-228ENST00000560975 RNF17Q9BXT8 1623 aaKnown RBP20.82■□□□□ 0.92
TPM1-228ENST00000560975 TCP11L2Q8N4U5 519 aa20.81■□□□□ 0.92
TPM1-228ENST00000560975 NGEFQ8N5V2 710 aa20.81■□□□□ 0.92
TPM1-228ENST00000560975 NPC1L1Q9UHC9 1359 aa20.81■□□□□ 0.92
TPM1-228ENST00000560975 RTEL1-TNFRSF6BF6WH68 1400 aa20.8■□□□□ 0.92
TPM1-228ENST00000560975 ZNF692Q9BU19 519 aaPredicted RBP20.8■□□□□ 0.92
TPM1-228ENST00000560975 ABCA8O94911 1581 aa20.8■□□□□ 0.92
TPM1-228ENST00000560975 MRC2Q9UBG0 1479 aa20.8■□□□□ 0.92
TPM1-228ENST00000560975 RSPH4AQ5TD94 716 aa20.8■□□□□ 0.92
TPM1-228ENST00000560975 FTSJ3Q8IY81 847 aaKnown RBP20.79■□□□□ 0.92
TPM1-228ENST00000560975 FOXD4L1Q9NU39 408 aa20.79■□□□□ 0.92
TPM1-228ENST00000560975 SCAF11Q99590 1463 aaKnown RBP20.79■□□□□ 0.92
TPM1-228ENST00000560975 TNPO1Q92973 898 aaKnown RBP20.79■□□□□ 0.92
TPM1-228ENST00000560975 IFT140Q96RY7 1462 aa20.79■□□□□ 0.92
TPM1-228ENST00000560975 AAMPQ13685 434 aa20.78■□□□□ 0.92
TPM1-228ENST00000560975 UNC13BO14795 1591 aa20.78■□□□□ 0.92
TPM1-228ENST00000560975 SYCP2Q9BX26 1530 aa20.78■□□□□ 0.92
TPM1-228ENST00000560975 PLXNC1O60486 1568 aa20.78■□□□□ 0.92
TPM1-228ENST00000560975 MVPQ14764 893 aaKnown RBP20.77■□□□□ 0.92
TPM1-228ENST00000560975 ZMYM3Q14202 1370 aa20.77■□□□□ 0.92
Retrieved 100 of 20,778 RNA–protein pairs in 7.3 ms