RNA–Protein interactions for RNA: ENST00000560637.5

VPS13C-209, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 1 (best)

Gene VPS13C, Length 3,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-209ENST00000560637 ZMYM4Q5VZL5 1548 aa7.27□□□□□ -1.24
VPS13C-209ENST00000560637 PSME1Q06323 249 aa7.27□□□□□ -1.25
VPS13C-209ENST00000560637 USP35Q9P2H5 1018 aa7.27□□□□□ -1.25
VPS13C-209ENST00000560637 PPP4R3CPQ6ZMV5 832 aa7.27□□□□□ -1.25
VPS13C-209ENST00000560637 NCKAP5LQ9HCH0 1330 aa7.27□□□□□ -1.25
VPS13C-209ENST00000560637 CCDC146Q8IYE0 955 aa7.26□□□□□ -1.25
VPS13C-209ENST00000560637 CFAP53Q96M91 514 aa7.26□□□□□ -1.25
VPS13C-209ENST00000560637 ZMYM3Q14202 1370 aa7.26□□□□□ -1.25
VPS13C-209ENST00000560637 ANKRD30BQ9BXX2 1392 aa7.26□□□□□ -1.25
VPS13C-209ENST00000560637 TTC37Q6PGP7 1564 aa7.26□□□□□ -1.25
VPS13C-209ENST00000560637 U2AF1L5P0DN76 240 aaPredicted RBP7.26□□□□□ -1.25
VPS13C-209ENST00000560637 U2AF1Q01081 240 aaKnown RBP eCLIP7.26□□□□□ -1.25
VPS13C-209ENST00000560637 ARHGEF40Q8TER5 1519 aa7.26□□□□□ -1.25
VPS13C-209ENST00000560637 EVC2Q86UK5 1308 aa7.25□□□□□ -1.25
VPS13C-209ENST00000560637 TERF2IPQ9NYB0 399 aa7.25□□□□□ -1.25
VPS13C-209ENST00000560637 AMOTL2Q9Y2J4 779 aa7.25□□□□□ -1.25
VPS13C-209ENST00000560637 GTF3C3Q9Y5Q9 886 aa7.25□□□□□ -1.25
VPS13C-209ENST00000560637 CABP1Q9NZU7 370 aa7.25□□□□□ -1.25
VPS13C-209ENST00000560637 EIF3AQ14152 1382 aaKnown RBP7.25□□□□□ -1.25
VPS13C-209ENST00000560637 KDM4FA0A1W2PPD8 638 aa7.25□□□□□ -1.25
VPS13C-209ENST00000560637 NUTM2BA6NNL0 878 aaPredicted RBP7.25□□□□□ -1.25
VPS13C-209ENST00000560637 NUTM2EB1AL46 878 aaPredicted RBP7.25□□□□□ -1.25
VPS13C-209ENST00000560637 NUTM2AQ8IVF1 878 aaPredicted RBP7.25□□□□□ -1.25
VPS13C-209ENST00000560637 KIF7Q2M1P5 1343 aa7.24□□□□□ -1.25
VPS13C-209ENST00000560637 AMPHP49418 695 aa7.24□□□□□ -1.25
VPS13C-209ENST00000560637 PELP1Q8IZL8 1130 aaKnown RBP7.24□□□□□ -1.25
VPS13C-209ENST00000560637 RRP7AQ9Y3A4 280 aaKnown RBP7.24□□□□□ -1.25
VPS13C-209ENST00000560637 NOS1P29475 1434 aa7.24□□□□□ -1.25
VPS13C-209ENST00000560637 TNRQ92752 1358 aa7.24□□□□□ -1.25
VPS13C-209ENST00000560637 FOXO3O43524 673 aa7.24□□□□□ -1.25
VPS13C-209ENST00000560637 ADAMTSL3P82987 1691 aa7.24□□□□□ -1.25
VPS13C-209ENST00000560637 C11orf95C9JLR9 678 aaPredicted RBP7.24□□□□□ -1.25
VPS13C-209ENST00000560637 ARHGEF12Q9NZN5 1544 aa7.24□□□□□ -1.25
VPS13C-209ENST00000560637 CDK19Q9BWU1 502 aa7.23□□□□□ -1.25
VPS13C-209ENST00000560637 WASHC2AQ641Q2 1341 aa7.23□□□□□ -1.25
VPS13C-209ENST00000560637 FBLN1P23142 703 aa7.23□□□□□ -1.25
VPS13C-209ENST00000560637 NLRP6P59044 892 aa7.23□□□□□ -1.25
VPS13C-209ENST00000560637 MAPK8IP3Q9UPT6 1336 aa7.23□□□□□ -1.25
VPS13C-209ENST00000560637 REREQ9P2R6 1566 aa7.22□□□□□ -1.25
VPS13C-209ENST00000560637 MBD5Q9P267 1494 aa7.22□□□□□ -1.25
VPS13C-209ENST00000560637 BCORL1Q5H9F3 1711 aa7.22□□□□□ -1.25
VPS13C-209ENST00000560637 NUDCQ9Y266 331 aa7.22□□□□□ -1.25
VPS13C-209ENST00000560637 COL17A1Q9UMD9 1497 aaPredicted RBP7.22□□□□□ -1.25
VPS13C-209ENST00000560637 PLCB2Q00722 1185 aa7.21□□□□□ -1.25
VPS13C-209ENST00000560637 FKBP8Q14318 412 aa7.21□□□□□ -1.25
VPS13C-209ENST00000560637 ABTB2Q8N961 1025 aa7.21□□□□□ -1.25
VPS13C-209ENST00000560637 ZNF330Q9Y3S2 320 aaPredicted RBP7.21□□□□□ -1.25
VPS13C-209ENST00000560637 ZFYVE16Q7Z3T8 1539 aa7.21□□□□□ -1.26
VPS13C-209ENST00000560637 HECW2Q9P2P5 1572 aa7.21□□□□□ -1.26
VPS13C-209ENST00000560637 KTN1Q86UP2 1357 aaKnown RBP7.21□□□□□ -1.26
VPS13C-209ENST00000560637 COG3Q96JB2 828 aa7.21□□□□□ -1.26
VPS13C-209ENST00000560637 RICTORQ6R327 1708 aa7.21□□□□□ -1.26
VPS13C-209ENST00000560637 ATP7AQ04656 1500 aa7.21□□□□□ -1.26
VPS13C-209ENST00000560637 MYO5CQ9NQX4 1742 aa7.2□□□□□ -1.26
VPS13C-209ENST00000560637 LTKP29376 864 aa7.2□□□□□ -1.26
VPS13C-209ENST00000560637 ZC3H6P61129 1189 aaKnown RBP7.2□□□□□ -1.26
VPS13C-209ENST00000560637 ATP10AO60312 1499 aa7.2□□□□□ -1.26
VPS13C-209ENST00000560637 KCNA6P17658 529 aa7.2□□□□□ -1.26
VPS13C-209ENST00000560637 TPRNQ4KMQ1 711 aa7.2□□□□□ -1.26
VPS13C-209ENST00000560637 HMOX1P09601 288 aa7.2□□□□□ -1.26
VPS13C-209ENST00000560637 ITSN2Q9NZM3 1697 aa7.19□□□□□ -1.26
VPS13C-209ENST00000560637 FRMPD1Q5SYB0 1578 aa7.19□□□□□ -1.26
VPS13C-209ENST00000560637 STRN4Q9NRL3 753 aa7.19□□□□□ -1.26
VPS13C-209ENST00000560637 TCOF1Q13428 1488 aaKnown RBP7.19□□□□□ -1.26
VPS13C-209ENST00000560637 DUOX2Q9NRD8 1548 aa7.19□□□□□ -1.26
VPS13C-209ENST00000560637 SAMD9LQ8IVG5 1584 aa7.19□□□□□ -1.26
VPS13C-209ENST00000560637 EVA1CP58658 441 aa7.19□□□□□ -1.26
VPS13C-209ENST00000560637 FAM135AQ9P2D6 1515 aa7.18□□□□□ -1.26
VPS13C-209ENST00000560637 ELL2O00472 640 aaPredicted RBP7.18□□□□□ -1.26
VPS13C-209ENST00000560637 RRS1Q15050 365 aaKnown RBP7.18□□□□□ -1.26
VPS13C-209ENST00000560637 NPM2Q86SE8 214 aaKnown RBP7.18□□□□□ -1.26
VPS13C-209ENST00000560637 FRAT1Q92837 279 aaPredicted RBP7.18□□□□□ -1.26
VPS13C-209ENST00000560637 DDX17Q92841 729 aaKnown RBP7.18□□□□□ -1.26
VPS13C-209ENST00000560637 ADAMTS2O95450 1211 aa7.18□□□□□ -1.26
VPS13C-209ENST00000560637 NUDT16Q96DE0 195 aaKnown RBP7.18□□□□□ -1.26
VPS13C-209ENST00000560637 PRKRIP1Q9H875 184 aaPredicted RBP7.17□□□□□ -1.26
VPS13C-209ENST00000560637 CCDC7Q96M83 1385 aa7.17□□□□□ -1.26
VPS13C-209ENST00000560637 MEX3CQ5U5Q3 659 aaKnown RBP7.17□□□□□ -1.26
VPS13C-209ENST00000560637 CGNL1Q0VF96 1302 aa7.17□□□□□ -1.26
VPS13C-209ENST00000560637 PTPRMP28827 1452 aa7.17□□□□□ -1.26
VPS13C-209ENST00000560637 TULP1O00294 542 aaPredicted RBP7.17□□□□□ -1.26
VPS13C-209ENST00000560637 SYTL4Q96C24 671 aaPredicted RBP7.17□□□□□ -1.26
VPS13C-209ENST00000560637 RTEL1-TNFRSF6BF6WH68 1400 aa7.16□□□□□ -1.26
VPS13C-209ENST00000560637 CCDC184Q52MB2 194 aa7.16□□□□□ -1.26
VPS13C-209ENST00000560637 NLRP2Q9NX02 1062 aa7.16□□□□□ -1.26
VPS13C-209ENST00000560637 AGLP35573 1532 aa7.16□□□□□ -1.26
VPS13C-209ENST00000560637 UBAP1LF5GYI3 381 aa7.16□□□□□ -1.26
VPS13C-209ENST00000560637 TCERG1O14776 1098 aaKnown RBP7.16□□□□□ -1.26
VPS13C-209ENST00000560637 SUPT16HQ9Y5B9 1047 aaKnown RBP7.16□□□□□ -1.26
VPS13C-209ENST00000560637 PZPP20742 1482 aa7.16□□□□□ -1.26
VPS13C-209ENST00000560637 NPATQ14207 1427 aa7.16□□□□□ -1.26
VPS13C-209ENST00000560637 MTHFSP49914 203 aa7.16□□□□□ -1.26
VPS13C-209ENST00000560637 C14orf93Q9H972 538 aaKnown RBP7.16□□□□□ -1.26
VPS13C-209ENST00000560637 CNTLNQ9NXG0 1405 aa7.16□□□□□ -1.26
VPS13C-209ENST00000560637 RPGRIP1LQ68CZ1 1315 aa7.15□□□□□ -1.26
VPS13C-209ENST00000560637 NME9Q86XW9 330 aa7.15□□□□□ -1.26
VPS13C-209ENST00000560637 CABLES1Q8TDN4 633 aa7.15□□□□□ -1.26
VPS13C-209ENST00000560637 UGGT1Q9NYU2 1555 aa7.15□□□□□ -1.26
VPS13C-209ENST00000560637 RIMS2Q9UQ26 1411 aa7.15□□□□□ -1.26
VPS13C-209ENST00000560637 KDM5CP41229 1560 aa7.15□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms