RNA–Protein interactions for RNA: ENST00000560634.1

CSPG4P11-201, Transcript of chondroitin sulfate proteoglycan 4 pseudogene 11, humanhuman

BASIC

Gene CSPG4P11, Length 4,910 nt, Biotype unprocessed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4P11-201ENST00000560634 ELL2O00472 640 aaPredicted RBP16.13■□□□□ 0.17
CSPG4P11-201ENST00000560634 VPS53Q5VIR6 699 aa16.13■□□□□ 0.17
CSPG4P11-201ENST00000560634 RNF20Q5VTR2 975 aa16.13■□□□□ 0.17
CSPG4P11-201ENST00000560634 MCTP1Q6DN14 999 aa16.13■□□□□ 0.17
CSPG4P11-201ENST00000560634 LTV1Q96GA3 475 aaPredicted RBP16.13■□□□□ 0.17
CSPG4P11-201ENST00000560634 BCL2L13Q9BXK5 485 aa16.13■□□□□ 0.17
CSPG4P11-201ENST00000560634 TEFQ10587 303 aa16.12■□□□□ 0.17
CSPG4P11-201ENST00000560634 EVC2Q86UK5 1308 aa16.12■□□□□ 0.17
CSPG4P11-201ENST00000560634 PDZRN4Q6ZMN7 1036 aaPredicted RBP16.12■□□□□ 0.17
CSPG4P11-201ENST00000560634 VGFO15240 615 aaPredicted RBP16.11■□□□□ 0.17
CSPG4P11-201ENST00000560634 PLIN1O60240 522 aa16.11■□□□□ 0.17
CSPG4P11-201ENST00000560634 CCDC9Q9Y3X0 531 aaKnown RBP16.11■□□□□ 0.17
CSPG4P11-201ENST00000560634 ROCK1Q13464 1354 aa16.11■□□□□ 0.17
CSPG4P11-201ENST00000560634 CPLX1O14810 134 aa16.1■□□□□ 0.17
CSPG4P11-201ENST00000560634 C1orf141Q5JVX7 400 aa16.1■□□□□ 0.17
CSPG4P11-201ENST00000560634 ZNF771Q7L3S4 317 aaPredicted RBP16.1■□□□□ 0.17
CSPG4P11-201ENST00000560634 DZIP1LQ8IYY4 767 aaKnown RBP16.1■□□□□ 0.17
CSPG4P11-201ENST00000560634 APAF1O14727 1248 aa16.09■□□□□ 0.17
CSPG4P11-201ENST00000560634 ZNF592Q92610 1267 aa16.09■□□□□ 0.17
CSPG4P11-201ENST00000560634 FOXD4L6Q3SYB3 417 aaPredicted RBP16.08■□□□□ 0.17
CSPG4P11-201ENST00000560634 FOXD4L3Q6VB84 417 aaPredicted RBP16.08■□□□□ 0.17
CSPG4P11-201ENST00000560634 C9orf78Q9NZ63 289 aaPredicted RBP16.08■□□□□ 0.17
CSPG4P11-201ENST00000560634 HOMER1Q86YM7 354 aa16.08■□□□□ 0.16
CSPG4P11-201ENST00000560634 BICD2Q8TD16 824 aa16.08■□□□□ 0.16
CSPG4P11-201ENST00000560634 AMOTL1Q8IY63 956 aa16.08■□□□□ 0.16
CSPG4P11-201ENST00000560634 DHX57Q6P158 1386 aaKnown RBP16.08■□□□□ 0.16
CSPG4P11-201ENST00000560634 TDRD9Q8NDG6 1382 aaKnown RBP16.07■□□□□ 0.16
CSPG4P11-201ENST00000560634 IFIT2P09913 472 aaKnown RBP16.07■□□□□ 0.16
CSPG4P11-201ENST00000560634 TRDNQ13061 729 aa16.07■□□□□ 0.16
CSPG4P11-201ENST00000560634 HSP90AB4PQ58FF6 505 aa16.07■□□□□ 0.16
CSPG4P11-201ENST00000560634 FAM43AQ8N2R8 423 aa16.07■□□□□ 0.16
CSPG4P11-201ENST00000560634 INTS3Q68E01 1043 aaKnown RBP16.07■□□□□ 0.16
CSPG4P11-201ENST00000560634 ARGLU1Q9NWB6 273 aaPredicted RBP16.06■□□□□ 0.16
CSPG4P11-201ENST00000560634 CDR1P51861 262 aa16.06■□□□□ 0.16
CSPG4P11-201ENST00000560634 USP47Q96K76 1375 aa16.05■□□□□ 0.16
CSPG4P11-201ENST00000560634 DDX58O95786 925 aaKnown RBP16.05■□□□□ 0.16
CSPG4P11-201ENST00000560634 NOL10Q9BSC4 688 aaKnown RBP16.05■□□□□ 0.16
CSPG4P11-201ENST00000560634 ACBD3Q9H3P7 528 aa16.05■□□□□ 0.16
CSPG4P11-201ENST00000560634 SASS6Q6UVJ0 657 aa16.05■□□□□ 0.16
CSPG4P11-201ENST00000560634 PCMTD1Q96MG8 357 aaPredicted RBP16.05■□□□□ 0.16
CSPG4P11-201ENST00000560634 ANO2Q9NQ90 1003 aa16.05■□□□□ 0.16
CSPG4P11-201ENST00000560634 SMC3Q9UQE7 1217 aa16.05■□□□□ 0.16
CSPG4P11-201ENST00000560634 DIAPH1O60610 1272 aaKnown RBP16.05■□□□□ 0.16
CSPG4P11-201ENST00000560634 RAPGEF2Q9Y4G8 1499 aa16.04■□□□□ 0.16
CSPG4P11-201ENST00000560634 CCDC73Q6ZRK6 1079 aa16.04■□□□□ 0.16
CSPG4P11-201ENST00000560634 TTC5Q8N0Z6 440 aa16.04■□□□□ 0.16
CSPG4P11-201ENST00000560634 FAM13BQ9NYF5 915 aa16.04■□□□□ 0.16
CSPG4P11-201ENST00000560634 NUTM2DQ5VT03 806 aaPredicted RBP16.03■□□□□ 0.16
CSPG4P11-201ENST00000560634 STAC3Q96MF2 364 aa16.03■□□□□ 0.16
CSPG4P11-201ENST00000560634 G3BP1Q13283 466 aaKnown RBP eCLIP16.03■□□□□ 0.16
CSPG4P11-201ENST00000560634 MTERF4Q7Z6M4 381 aaKnown RBP16.03■□□□□ 0.16
CSPG4P11-201ENST00000560634 CADPSQ9ULU8 1353 aa16.03■□□□□ 0.16
CSPG4P11-201ENST00000560634 ERC2O15083 957 aa16.02■□□□□ 0.15
CSPG4P11-201ENST00000560634 TOP2AP11388 1531 aaKnown RBP16.02■□□□□ 0.15
CSPG4P11-201ENST00000560634 FHOD3Q2V2M9 1422 aa16.01■□□□□ 0.15
CSPG4P11-201ENST00000560634 MRE11P49959 708 aa16.01■□□□□ 0.15
CSPG4P11-201ENST00000560634 MAP7D2Q96T17 732 aa16.01■□□□□ 0.15
CSPG4P11-201ENST00000560634 VPS37CA5D8V6 355 aaPredicted RBP16.01■□□□□ 0.15
CSPG4P11-201ENST00000560634 SAFBQ15424 915 aaKnown RBP eCLIP16.01■□□□□ 0.15
CSPG4P11-201ENST00000560634 RUNDC1Q96C34 613 aa16.01■□□□□ 0.15
CSPG4P11-201ENST00000560634 NUTM2FA1L443 756 aa16.01■□□□□ 0.15
CSPG4P11-201ENST00000560634 RIPK4P57078 832 aa16.01■□□□□ 0.15
CSPG4P11-201ENST00000560634 MNS1Q8NEH6 495 aa16.01■□□□□ 0.15
CSPG4P11-201ENST00000560634 GNAI1P63096 354 aa16■□□□□ 0.15
CSPG4P11-201ENST00000560634 C22orf23Q9BZE7 217 aa16■□□□□ 0.15
CSPG4P11-201ENST00000560634 APPP05067 770 aa16■□□□□ 0.15
CSPG4P11-201ENST00000560634 ABCC8Q09428 1581 aa15.99■□□□□ 0.15
CSPG4P11-201ENST00000560634 TCEAL9Q9UHQ7 104 aa15.99■□□□□ 0.15
CSPG4P11-201ENST00000560634 ATAD2BQ9ULI0 1458 aa15.99■□□□□ 0.15
CSPG4P11-201ENST00000560634 HSP90B2PQ58FF3 399 aa15.99■□□□□ 0.15
CSPG4P11-201ENST00000560634 AK7Q96M32 723 aa15.99■□□□□ 0.15
CSPG4P11-201ENST00000560634 RUFY1Q96T51 708 aa15.99■□□□□ 0.15
CSPG4P11-201ENST00000560634 EIF2S2P20042 333 aaKnown RBP15.98■□□□□ 0.15
CSPG4P11-201ENST00000560634 FKBP5Q13451 457 aaPredicted RBP15.98■□□□□ 0.15
CSPG4P11-201ENST00000560634 ERICH2A1L162 156 aa15.98■□□□□ 0.15
CSPG4P11-201ENST00000560634 NAT10Q9H0A0 1025 aaKnown RBP15.98■□□□□ 0.15
CSPG4P11-201ENST00000560634 NOM1Q5C9Z4 860 aaKnown RBP15.98■□□□□ 0.15
CSPG4P11-201ENST00000560634 IFT57Q9NWB7 429 aa15.98■□□□□ 0.15
CSPG4P11-201ENST00000560634 CCDC39Q9UFE4 941 aa15.97■□□□□ 0.15
CSPG4P11-201ENST00000560634 RRP12Q5JTH9 1297 aaKnown RBP15.96■□□□□ 0.15
CSPG4P11-201ENST00000560634 JPH4Q96JJ6 628 aa15.96■□□□□ 0.15
CSPG4P11-201ENST00000560634 WIZO95785 1651 aa15.96■□□□□ 0.15
CSPG4P11-201ENST00000560634 NFXL1Q6ZNB6 911 aa15.96■□□□□ 0.15
CSPG4P11-201ENST00000560634 TRIM34Q9BYJ4 488 aa15.96■□□□□ 0.15
CSPG4P11-201ENST00000560634 CDC45O75419 566 aa15.96■□□□□ 0.14
CSPG4P11-201ENST00000560634 MBD3O95983 291 aa15.95■□□□□ 0.14
CSPG4P11-201ENST00000560634 NFKBIBQ15653 356 aa15.95■□□□□ 0.14
CSPG4P11-201ENST00000560634 LETM1O95202 739 aaPredicted RBP15.94■□□□□ 0.14
CSPG4P11-201ENST00000560634 RALYLQ86SE5 291 aaKnown RBP15.94■□□□□ 0.14
CSPG4P11-201ENST00000560634 LNPKQ9C0E8 428 aa15.94■□□□□ 0.14
CSPG4P11-201ENST00000560634 ZSCAN21Q9Y5A6 473 aaPredicted RBP15.94■□□□□ 0.14
CSPG4P11-201ENST00000560634 CTDP1Q9Y5B0 961 aaPredicted RBP15.94■□□□□ 0.14
CSPG4P11-201ENST00000560634 WWC1Q8IX03 1113 aa15.94■□□□□ 0.14
CSPG4P11-201ENST00000560634 DHX16O60231 1041 aaKnown RBP15.93■□□□□ 0.14
CSPG4P11-201ENST00000560634 NASPP49321 788 aaPredicted RBP15.93■□□□□ 0.14
CSPG4P11-201ENST00000560634 MINK1Q8N4C8 1332 aaPredicted RBP15.93■□□□□ 0.14
CSPG4P11-201ENST00000560634 PSMA5P28066 241 aa15.93■□□□□ 0.14
CSPG4P11-201ENST00000560634 ERCC4Q92889 916 aaPredicted RBP15.93■□□□□ 0.14
CSPG4P11-201ENST00000560634 MCM2P49736 904 aa15.93■□□□□ 0.14
CSPG4P11-201ENST00000560634 OLFM4Q6UX06 510 aa15.93■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 997.9 ms