RNA–Protein interactions for RNA: ENST00000559257.5

USP3-211, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 2,217 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-211ENST00000559257 GOLIM4O00461 696 aa10.54□□□□□ -0.72
USP3-211ENST00000559257 TRAK2O60296 914 aa10.54□□□□□ -0.72
USP3-211ENST00000559257 CT47A1Q5JQC4 288 aaPredicted RBP10.54□□□□□ -0.72
USP3-211ENST00000559257 NBPF10Q6P3W6 841 aaKnown RBP10.54□□□□□ -0.72
USP3-211ENST00000559257 CREBRFQ8IUR6 639 aa10.54□□□□□ -0.72
USP3-211ENST00000559257 TRHP20396 242 aaPredicted RBP10.54□□□□□ -0.72
USP3-211ENST00000559257 PRIMPOLQ96LW4 560 aa10.53□□□□□ -0.72
USP3-211ENST00000559257 SCAPERQ9BY12 1400 aa10.53□□□□□ -0.72
USP3-211ENST00000559257 PRDM2Q13029 1718 aa10.53□□□□□ -0.72
USP3-211ENST00000559257 KIF1CO43896 1103 aaKnown RBP10.53□□□□□ -0.72
USP3-211ENST00000559257 RAD50Q92878 1312 aa10.53□□□□□ -0.72
USP3-211ENST00000559257 KIF16BQ96L93 1317 aa10.53□□□□□ -0.72
USP3-211ENST00000559257 DDX11L8A8MPP1 907 aa10.52□□□□□ -0.73
USP3-211ENST00000559257 RBM25P49756 843 aaKnown RBP10.52□□□□□ -0.73
USP3-211ENST00000559257 HMGN5P82970 282 aaKnown RBP10.52□□□□□ -0.73
USP3-211ENST00000559257 VIRMAQ69YN4 1812 aaKnown RBP10.52□□□□□ -0.73
USP3-211ENST00000559257 ZNF710Q8N1W2 664 aa10.52□□□□□ -0.73
USP3-211ENST00000559257 GTF2A1P52655 376 aaPredicted RBP10.52□□□□□ -0.73
USP3-211ENST00000559257 FEZ2Q9UHY8 353 aaPredicted RBP10.52□□□□□ -0.73
USP3-211ENST00000559257 SSR1P43307 286 aaKnown RBP10.51□□□□□ -0.73
USP3-211ENST00000559257 NOP2P46087 812 aaKnown RBP10.51□□□□□ -0.73
USP3-211ENST00000559257 C8orf34Q49A92 452 aa10.51□□□□□ -0.73
USP3-211ENST00000559257 OTUD6BQ8N6M0 293 aa10.51□□□□□ -0.73
USP3-211ENST00000559257 KTN1Q86UP2 1357 aaKnown RBP10.51□□□□□ -0.73
USP3-211ENST00000559257 ZKSCAN8Q15776 578 aaPredicted RBP10.5□□□□□ -0.73
USP3-211ENST00000559257 EP400NLQ6ZTU2 488 aa10.5□□□□□ -0.73
USP3-211ENST00000559257 ZBTB9Q96C00 473 aa10.5□□□□□ -0.73
USP3-211ENST00000559257 TERF2IPQ9NYB0 399 aa10.5□□□□□ -0.73
USP3-211ENST00000559257 DONSONQ9NYP3 566 aa10.5□□□□□ -0.73
USP3-211ENST00000559257 OGFRQ9NZT2 677 aa10.5□□□□□ -0.73
USP3-211ENST00000559257 IBTKQ9P2D0 1353 aaPredicted RBP10.5□□□□□ -0.73
USP3-211ENST00000559257 RRP1P56182 461 aaKnown RBP10.5□□□□□ -0.73
USP3-211ENST00000559257 NCOA2Q15596 1464 aa10.5□□□□□ -0.73
USP3-211ENST00000559257 SLFN14P0C7P3 912 aa10.49□□□□□ -0.73
USP3-211ENST00000559257 TNNT3P45378 269 aaPredicted RBP10.49□□□□□ -0.73
USP3-211ENST00000559257 NBPF6Q5VWK0 638 aa10.49□□□□□ -0.73
USP3-211ENST00000559257 NBPF5PQ86XG9 351 aaPredicted RBP10.49□□□□□ -0.73
USP3-211ENST00000559257 RNF217Q8TC41 542 aa10.49□□□□□ -0.73
USP3-211ENST00000559257 NBPF4Q96M43 638 aa10.49□□□□□ -0.73
USP3-211ENST00000559257 GZF1Q9H116 711 aaPredicted RBP10.49□□□□□ -0.73
USP3-211ENST00000559257 ABCF1Q8NE71 845 aaKnown RBP eCLIP10.49□□□□□ -0.73
USP3-211ENST00000559257 ICE2Q659A1 982 aa10.48□□□□□ -0.73
USP3-211ENST00000559257 EXOC6Q8TAG9 804 aa10.48□□□□□ -0.73
USP3-211ENST00000559257 HMGXB3Q12766 1538 aa10.48□□□□□ -0.73
USP3-211ENST00000559257 GUCY2CP25092 1073 aa10.48□□□□□ -0.73
USP3-211ENST00000559257 CASC1Q6TDU7 716 aa10.48□□□□□ -0.73
USP3-211ENST00000559257 MNS1Q8NEH6 495 aa10.48□□□□□ -0.73
USP3-211ENST00000559257 SLC26A8Q96RN1 970 aa10.48□□□□□ -0.73
USP3-211ENST00000559257 ZKSCAN5Q9Y2L8 839 aa10.48□□□□□ -0.73
USP3-211ENST00000559257 RRBP1Q9P2E9 1410 aaKnown RBP10.47□□□□□ -0.73
USP3-211ENST00000559257 PDCL2Q8N4E4 241 aa10.47□□□□□ -0.73
USP3-211ENST00000559257 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP10.46□□□□□ -0.73
USP3-211ENST00000559257 HSP90AB1P08238 724 aaKnown RBP10.46□□□□□ -0.73
USP3-211ENST00000559257 SUGP2Q8IX01 1082 aaKnown RBP eCLIP10.46□□□□□ -0.73
USP3-211ENST00000559257 CNTLNQ9NXG0 1405 aa10.46□□□□□ -0.74
USP3-211ENST00000559257 XPCQ01831 940 aaPredicted RBP10.46□□□□□ -0.74
USP3-211ENST00000559257 MLECQ14165 292 aa10.46□□□□□ -0.74
USP3-211ENST00000559257 SKOR2Q2VWA4 1001 aaPredicted RBP10.46□□□□□ -0.74
USP3-211ENST00000559257 UPF2Q9HAU5 1272 aaKnown RBP10.46□□□□□ -0.74
USP3-211ENST00000559257 DHX16O60231 1041 aaKnown RBP10.45□□□□□ -0.74
USP3-211ENST00000559257 NASPP49321 788 aaPredicted RBP10.45□□□□□ -0.74
USP3-211ENST00000559257 MED4Q9NPJ6 270 aa10.45□□□□□ -0.74
USP3-211ENST00000559257 EIF2AK3Q9NZJ5 1116 aaKnown RBP10.45□□□□□ -0.74
USP3-211ENST00000559257 RAPGEF2Q9Y4G8 1499 aa10.45□□□□□ -0.74
USP3-211ENST00000559257 CALRP27797 417 aaKnown RBP10.45□□□□□ -0.74
USP3-211ENST00000559257 FAM9BQ8IZU0 186 aa10.45□□□□□ -0.74
USP3-211ENST00000559257 SGSM3Q96HU1 749 aa10.45□□□□□ -0.74
USP3-211ENST00000559257 PANK3Q9H999 370 aa10.45□□□□□ -0.74
USP3-211ENST00000559257 CCDC144AA2RUR9 1427 aa10.44□□□□□ -0.74
USP3-211ENST00000559257 PRXQ9BXM0 1461 aa10.44□□□□□ -0.74
USP3-211ENST00000559257 ZNF853P0CG23 659 aa10.44□□□□□ -0.74
USP3-211ENST00000559257 PDLIM2Q96JY6 352 aa10.44□□□□□ -0.74
USP3-211ENST00000559257 MRS2Q9HD23 443 aa10.44□□□□□ -0.74
USP3-211ENST00000559257 SPINK5Q9NQ38 1064 aaPredicted RBP10.44□□□□□ -0.74
USP3-211ENST00000559257 FHAD1B1AJZ9 1412 aa10.44□□□□□ -0.74
USP3-211ENST00000559257 TERF2Q15554 542 aa10.43□□□□□ -0.74
USP3-211ENST00000559257 GAS2L3Q86XJ1 694 aa10.43□□□□□ -0.74
USP3-211ENST00000559257 ANKRD7Q92527 254 aa10.43□□□□□ -0.74
USP3-211ENST00000559257 MYOM3Q5VTT5 1437 aa10.43□□□□□ -0.74
USP3-211ENST00000559257 MPNDQ8N594 471 aa10.42□□□□□ -0.74
USP3-211ENST00000559257 SLKQ9H2G2 1235 aaPredicted RBP10.42□□□□□ -0.74
USP3-211ENST00000559257 PRKRIP1Q9H875 184 aaPredicted RBP10.42□□□□□ -0.74
USP3-211ENST00000559257 CHMP5Q9NZZ3 219 aa10.42□□□□□ -0.74
USP3-211ENST00000559257 STK26Q9P289 416 aa10.42□□□□□ -0.74
USP3-211ENST00000559257 RSPH14Q9UHP6 348 aa10.42□□□□□ -0.74
USP3-211ENST00000559257 SPDYE4A6NLX3 237 aa10.42□□□□□ -0.74
USP3-211ENST00000559257 CCDC184Q52MB2 194 aa10.42□□□□□ -0.74
USP3-211ENST00000559257 RASSF4Q9H2L5 321 aa10.42□□□□□ -0.74
USP3-211ENST00000559257 KDM2BQ8NHM5 1336 aa10.42□□□□□ -0.74
USP3-211ENST00000559257 KIF3CO14782 793 aa10.41□□□□□ -0.74
USP3-211ENST00000559257 TDO2P48775 406 aa10.41□□□□□ -0.74
USP3-211ENST00000559257 ITFG2Q969R8 447 aa10.41□□□□□ -0.74
USP3-211ENST00000559257 USP19O94966 1318 aa10.41□□□□□ -0.74
USP3-211ENST00000559257 PLEKHD1A6NEE1 506 aa10.41□□□□□ -0.74
USP3-211ENST00000559257 CDCA8Q53HL2 280 aa10.41□□□□□ -0.74
USP3-211ENST00000559257 CENPQQ7L2Z9 268 aaPredicted RBP10.41□□□□□ -0.74
USP3-211ENST00000559257 CCDC39Q9UFE4 941 aa10.39□□□□□ -0.75
USP3-211ENST00000559257 CCDC189A1A4V9 331 aa10.39□□□□□ -0.75
USP3-211ENST00000559257 PPP1R12AO14974 1030 aaPredicted RBP10.39□□□□□ -0.75
USP3-211ENST00000559257 ARID4AP29374 1257 aaPredicted RBP10.39□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms