RNA–Protein interactions for RNA: ENST00000559192.5

USP3-210, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best)

Gene USP3, Length 5,499 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-210ENST00000559192 FOXD4L3Q6VB84 417 aaPredicted RBP8.85□□□□□ -0.99
USP3-210ENST00000559192 DNMBPQ6XZF7 1577 aa8.85□□□□□ -0.99
USP3-210ENST00000559192 ROCK1Q13464 1354 aa8.84□□□□□ -0.99
USP3-210ENST00000559192 LNPKQ9C0E8 428 aa8.84□□□□□ -0.99
USP3-210ENST00000559192 MRE11P49959 708 aa8.84□□□□□ -0.99
USP3-210ENST00000559192 SKOR2Q2VWA4 1001 aaPredicted RBP8.84□□□□□ -0.99
USP3-210ENST00000559192 RUNDC1Q96C34 613 aa8.84□□□□□ -0.99
USP3-210ENST00000559192 C9orf84Q5VXU9 1444 aa8.84□□□□□ -0.99
USP3-210ENST00000559192 CUL7Q14999 1698 aa8.84□□□□□ -0.99
USP3-210ENST00000559192 MCCP23508 829 aa8.84□□□□□ -0.99
USP3-210ENST00000559192 FAM13BQ9NYF5 915 aa8.84□□□□□ -0.99
USP3-210ENST00000559192 ABCA10Q8WWZ4 1543 aa8.83□□□□□ -1
USP3-210ENST00000559192 APPP05067 770 aa8.83□□□□□ -1
USP3-210ENST00000559192 RSPH4AQ5TD94 716 aa8.83□□□□□ -1
USP3-210ENST00000559192 EFCAB2Q5VUJ9 269 aa8.83□□□□□ -1
USP3-210ENST00000559192 MCTP1Q6DN14 999 aa8.83□□□□□ -1
USP3-210ENST00000559192 DRC7Q8IY82 874 aa8.83□□□□□ -1
USP3-210ENST00000559192 CAMSAP2Q08AD1 1489 aa8.83□□□□□ -1
USP3-210ENST00000559192 SPAG9O60271 1321 aaKnown RBP8.82□□□□□ -1
USP3-210ENST00000559192 DDX19BQ9UMR2 479 aa8.82□□□□□ -1
USP3-210ENST00000559192 SLFN5Q08AF3 891 aa8.82□□□□□ -1
USP3-210ENST00000559192 KIAA2012Q0VF49 1180 aa8.82□□□□□ -1
USP3-210ENST00000559192 C14orf37Q86TY3 774 aa8.82□□□□□ -1
USP3-210ENST00000559192 HDGFL2Q7Z4V5 671 aaPredicted RBP8.82□□□□□ -1
USP3-210ENST00000559192 SUGP2Q8IX01 1082 aaKnown RBP eCLIP8.81□□□□□ -19e-8■■■■□ 26.3
USP3-210ENST00000559192 UGGT2Q9NYU1 1516 aa8.81□□□□□ -1
USP3-210ENST00000559192 OS9Q13438 667 aaPredicted RBP8.81□□□□□ -1
USP3-210ENST00000559192 TAOK2Q9UL54 1235 aa8.81□□□□□ -1
USP3-210ENST00000559192 TCP11L2Q8N4U5 519 aa8.81□□□□□ -1
USP3-210ENST00000559192 GRIN2BQ13224 1484 aa8.81□□□□□ -1
USP3-210ENST00000559192 DHX29Q7Z478 1369 aaKnown RBP8.81□□□□□ -1
USP3-210ENST00000559192 WASHC2CQ9Y4E1 1318 aa8.8□□□□□ -1
USP3-210ENST00000559192 TRIM6-TRIM34B2RNG4 842 aa8.8□□□□□ -1
USP3-210ENST00000559192 ST18O60284 1047 aa8.8□□□□□ -1
USP3-210ENST00000559192 PDE3AQ14432 1141 aa8.8□□□□□ -1
USP3-210ENST00000559192 CFAP44Q96MT7 982 aa8.8□□□□□ -1
USP3-210ENST00000559192 GRPEL1Q9HAV7 217 aa8.8□□□□□ -1
USP3-210ENST00000559192 IGHDP01880 384 aa8.8□□□□□ -1
USP3-210ENST00000559192 NASPP49321 788 aaPredicted RBP8.8□□□□□ -1
USP3-210ENST00000559192 RBM10P98175 930 aaKnown RBP8.8□□□□□ -1
USP3-210ENST00000559192 TSR2Q969E8 191 aaKnown RBP8.8□□□□□ -1
USP3-210ENST00000559192 R3HCC1Q9Y3T6 440 aaKnown RBP8.8□□□□□ -1
USP3-210ENST00000559192 THOC2Q8NI27 1593 aaKnown RBP8.8□□□□□ -1
USP3-210ENST00000559192 DISP3Q9P2K9 1392 aa8.8□□□□□ -1
USP3-210ENST00000559192 C8orf34Q49A92 452 aa8.8□□□□□ -1
USP3-210ENST00000559192 DUSP27Q5VZP5 1158 aa8.8□□□□□ -1
USP3-210ENST00000559192 MCM4P33991 863 aa8.79□□□□□ -1
USP3-210ENST00000559192 KCNJ4P48050 445 aa8.79□□□□□ -1
USP3-210ENST00000559192 RIPK4P57078 832 aa8.79□□□□□ -1
USP3-210ENST00000559192 SLC4A10Q6U841 1118 aa8.79□□□□□ -1
USP3-210ENST00000559192 CC2D2AQ9P2K1 1620 aa8.79□□□□□ -1
USP3-210ENST00000559192 SYAP1Q96A49 352 aaPredicted RBP8.79□□□□□ -1
USP3-210ENST00000559192 C1orf115Q9H7X2 142 aa8.79□□□□□ -1
USP3-210ENST00000559192 TROQ12816 1431 aaPredicted RBP8.78□□□□□ -1
USP3-210ENST00000559192 GOLGA6L4A6NEF3 574 aa8.78□□□□□ -1
USP3-210ENST00000559192 CTTNBP2Q8WZ74 1663 aa8.78□□□□□ -1
USP3-210ENST00000559192 IQGAP2Q13576 1575 aa8.78□□□□□ -1
USP3-210ENST00000559192 MTHFSP49914 203 aa8.78□□□□□ -1
USP3-210ENST00000559192 SNAPC4Q5SXM2 1469 aa8.78□□□□□ -1
USP3-210ENST00000559192 EXOSC9Q06265 439 aaKnown RBP8.77□□□□□ -1
USP3-210ENST00000559192 PDZRN4Q6ZMN7 1036 aaPredicted RBP8.77□□□□□ -1
USP3-210ENST00000559192 PLEKHH2Q8IVE3 1493 aa8.77□□□□□ -1.01
USP3-210ENST00000559192 CFAP70Q5T0N1 1121 aa8.77□□□□□ -1.01
USP3-210ENST00000559192 TBC1D2Q9BYX2 928 aa8.77□□□□□ -1.01
USP3-210ENST00000559192 CAVIN1Q6NZI2 390 aaKnown RBP8.77□□□□□ -1.01
USP3-210ENST00000559192 NOB1Q9ULX3 412 aaKnown RBP8.77□□□□□ -1.01
USP3-210ENST00000559192 ARHGAP5Q13017 1502 aa8.77□□□□□ -1.01
USP3-210ENST00000559192 NKTRP30414 1462 aaKnown RBP8.77□□□□□ -1.01
USP3-210ENST00000559192 PTPRGP23470 1445 aa8.77□□□□□ -1.01
USP3-210ENST00000559192 UBE2Q2Q8WVN8 375 aa8.77□□□□□ -1.01
USP3-210ENST00000559192 SETQ01105 290 aaPredicted RBP8.77□□□□□ -1.01
USP3-210ENST00000559192 NGEFQ8N5V2 710 aa8.77□□□□□ -1.01
USP3-210ENST00000559192 ZNF771Q7L3S4 317 aaPredicted RBP8.76□□□□□ -1.01
USP3-210ENST00000559192 TERF2IPQ9NYB0 399 aa8.76□□□□□ -1.01
USP3-210ENST00000559192 NAP1L2Q9ULW6 460 aaPredicted RBP8.76□□□□□ -1.01
USP3-210ENST00000559192 WWC1Q8IX03 1113 aa8.76□□□□□ -1.01
USP3-210ENST00000559192 RILPL2Q969X0 211 aa8.76□□□□□ -1.01
USP3-210ENST00000559192 MVPQ14764 893 aaKnown RBP8.75□□□□□ -1.01
USP3-210ENST00000559192 TMEM132EQ6IEE7 984 aa8.75□□□□□ -1.01
USP3-210ENST00000559192 LRPPRCP42704 1394 aaKnown RBP8.75□□□□□ -1.01
USP3-210ENST00000559192 GOLGA6L1Q8N7Z2 621 aa8.75□□□□□ -1.01
USP3-210ENST00000559192 RNF214Q8ND24 703 aa8.75□□□□□ -1.01
USP3-210ENST00000559192 GGNBP2Q9H3C7 697 aa8.75□□□□□ -1.01
USP3-210ENST00000559192 EVC2Q86UK5 1308 aa8.75□□□□□ -1.01
USP3-210ENST00000559192 AAMPQ13685 434 aa8.75□□□□□ -1.01
USP3-210ENST00000559192 RTF1Q92541 710 aaKnown RBP8.75□□□□□ -1.01
USP3-210ENST00000559192 CABP2Q9NPB3 220 aa8.75□□□□□ -1.01
USP3-210ENST00000559192 RALGAPBQ86X10 1494 aa8.75□□□□□ -1.01
USP3-210ENST00000559192 RNF123Q5XPI4 1314 aa8.74□□□□□ -1.01
USP3-210ENST00000559192 NINLQ9Y2I6 1382 aa8.74□□□□□ -1.01
USP3-210ENST00000559192 ESPNB1AK53 854 aa8.74□□□□□ -1.01
USP3-210ENST00000559192 TPM2P07951 284 aa8.74□□□□□ -1.01
USP3-210ENST00000559192 MINK1Q8N4C8 1332 aaPredicted RBP8.74□□□□□ -1.01
USP3-210ENST00000559192 ARHGEF11O15085 1522 aa8.74□□□□□ -1.01
USP3-210ENST00000559192 CCDC173Q0VFZ6 552 aa8.74□□□□□ -1.01
USP3-210ENST00000559192 KIAA1211Q6ZU35 1233 aa8.74□□□□□ -1.01
USP3-210ENST00000559192 DIAPH1O60610 1272 aaKnown RBP8.74□□□□□ -1.01
USP3-210ENST00000559192 HMOX1P09601 288 aa8.74□□□□□ -1.01
USP3-210ENST00000559192 FGD1P98174 961 aa8.74□□□□□ -1.01
USP3-210ENST00000559192 TCOF1Q13428 1488 aaKnown RBP8.74□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 7.5 ms