RNA–Protein interactions for RNA: ENST00000558868.5

TPM1-215, Transcript of tropomyosin 1, humanhuman

TSL 2

Gene TPM1, Length 653 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-215ENST00000558868 IFT172Q9UG01 1749 aa19.22■□□□□ 0.67
TPM1-215ENST00000558868 KIAA1210Q9ULL0 1709 aa19.22■□□□□ 0.67
TPM1-215ENST00000558868 CCDC7Q96M83 1385 aa19.22■□□□□ 0.67
TPM1-215ENST00000558868 MROH2AA6NES4 1674 aa19.22■□□□□ 0.67
TPM1-215ENST00000558868 ERVK-7P63135 1459 aa19.22■□□□□ 0.67
TPM1-215ENST00000558868 MLECQ14165 292 aa19.2■□□□□ 0.66
TPM1-215ENST00000558868 NBPF1Q3BBV0 1214 aa19.19■□□□□ 0.66
TPM1-215ENST00000558868 CERKQ8TCT0 537 aa19.19■□□□□ 0.66
TPM1-215ENST00000558868 NRXN1Q9ULB1 1477 aa19.18■□□□□ 0.66
TPM1-215ENST00000558868 PPLO60437 1756 aa19.17■□□□□ 0.66
TPM1-215ENST00000558868 IDI1Q13907 227 aa19.17■□□□□ 0.66
TPM1-215ENST00000558868 ST20-MTHFSA0A0A6YYL1 179 aa19.16■□□□□ 0.66
TPM1-215ENST00000558868 KIF7Q2M1P5 1343 aa19.16■□□□□ 0.66
TPM1-215ENST00000558868 VGFO15240 615 aaPredicted RBP19.15■□□□□ 0.66
TPM1-215ENST00000558868 ANP32CO43423 234 aa19.15■□□□□ 0.66
TPM1-215ENST00000558868 C11orf95C9JLR9 678 aaPredicted RBP19.14■□□□□ 0.65
TPM1-215ENST00000558868 ZMYM3Q14202 1370 aa19.14■□□□□ 0.65
TPM1-215ENST00000558868 FBXO31Q5XUX0 539 aaPredicted RBP19.13■□□□□ 0.65
TPM1-215ENST00000558868 ADGRF5Q8IZF2 1346 aa19.13■□□□□ 0.65
TPM1-215ENST00000558868 EIF3AQ14152 1382 aaKnown RBP19.13■□□□□ 0.65
TPM1-215ENST00000558868 SCAF11Q99590 1463 aaKnown RBP19.13■□□□□ 0.65
TPM1-215ENST00000558868 TMEM131LA2VDJ0 1609 aa19.12■□□□□ 0.65
TPM1-215ENST00000558868 ZFYVE9O95405 1425 aa19.12■□□□□ 0.65
TPM1-215ENST00000558868 SLC24A1O60721 1099 aa19.12■□□□□ 0.65
TPM1-215ENST00000558868 IQGAP1P46940 1657 aa19.11■□□□□ 0.65
TPM1-215ENST00000558868 NEXMIFQ5QGS0 1516 aa19.1■□□□□ 0.65
TPM1-215ENST00000558868 PIK3C2GO75747 1445 aa19.1■□□□□ 0.65
TPM1-215ENST00000558868 STAG3Q9UJ98 1225 aa19.1■□□□□ 0.65
TPM1-215ENST00000558868 SETBP1Q9Y6X0 1596 aa19.1■□□□□ 0.65
TPM1-215ENST00000558868 CFAP70Q5T0N1 1121 aa19.08■□□□□ 0.64
TPM1-215ENST00000558868 C14orf93Q9H972 538 aaKnown RBP19.08■□□□□ 0.64
TPM1-215ENST00000558868 TMF1P82094 1093 aa19.06■□□□□ 0.64
TPM1-215ENST00000558868 PTPRMP28827 1452 aa19.05■□□□□ 0.64
TPM1-215ENST00000558868 CCER2I3L3R5 266 aa19.05■□□□□ 0.64
TPM1-215ENST00000558868 TNRQ92752 1358 aa19.05■□□□□ 0.64
TPM1-215ENST00000558868 CDCA8Q53HL2 280 aa19.04■□□□□ 0.64
TPM1-215ENST00000558868 TESK2Q96S53 571 aa19.04■□□□□ 0.64
TPM1-215ENST00000558868 MYO5BQ9ULV0 1848 aa19.03■□□□□ 0.64
TPM1-215ENST00000558868 POLR3GLQ9BT43 218 aa19.03■□□□□ 0.64
TPM1-215ENST00000558868 A2ML1A8K2U0 1454 aa19.02■□□□□ 0.63
TPM1-215ENST00000558868 HDGFP51858 240 aaKnown RBP19.01■□□□□ 0.63
TPM1-215ENST00000558868 ABCF1Q8NE71 845 aaKnown RBP eCLIP19.01■□□□□ 0.63
TPM1-215ENST00000558868 KDM5AP29375 1690 aaKnown RBP19.01■□□□□ 0.63
TPM1-215ENST00000558868 FER1L4A9Z1Z3 1794 aa19■□□□□ 0.63
TPM1-215ENST00000558868 ADAMTSL3P82987 1691 aa18.99■□□□□ 0.63
TPM1-215ENST00000558868 CENPBP07199 599 aaPredicted RBP18.99■□□□□ 0.63
TPM1-215ENST00000558868 ADGRB1O14514 1584 aa18.98■□□□□ 0.63
TPM1-215ENST00000558868 NLRP1Q9C000 1473 aa18.98■□□□□ 0.63
TPM1-215ENST00000558868 RIMS2Q9UQ26 1411 aa18.98■□□□□ 0.63
TPM1-215ENST00000558868 MYO3AQ8NEV4 1616 aa18.97■□□□□ 0.63
TPM1-215ENST00000558868 SBNO2Q9Y2G9 1366 aa18.96■□□□□ 0.63
TPM1-215ENST00000558868 HSPA2P54652 639 aa18.95■□□□□ 0.62
TPM1-215ENST00000558868 NUTM2DQ5VT03 806 aaPredicted RBP18.95■□□□□ 0.62
TPM1-215ENST00000558868 C3P01024 1663 aa18.95■□□□□ 0.62
TPM1-215ENST00000558868 CENPJQ9HC77 1338 aaPredicted RBP18.94■□□□□ 0.62
TPM1-215ENST00000558868 PRKRIP1Q9H875 184 aaPredicted RBP18.92■□□□□ 0.62
TPM1-215ENST00000558868 KTN1Q86UP2 1357 aaKnown RBP18.91■□□□□ 0.62
TPM1-215ENST00000558868 TMEM132EQ6IEE7 984 aa18.9■□□□□ 0.62
TPM1-215ENST00000558868 YTHDC1Q96MU7 727 aaKnown RBP18.9■□□□□ 0.62
TPM1-215ENST00000558868 TRAK1Q9UPV9 953 aa18.9■□□□□ 0.62
TPM1-215ENST00000558868 UBR1Q8IWV7 1749 aa18.9■□□□□ 0.62
TPM1-215ENST00000558868 ALKQ9UM73 1620 aa18.89■□□□□ 0.62
TPM1-215ENST00000558868 CEBPAP49715 358 aaPredicted RBP18.88■□□□□ 0.61
TPM1-215ENST00000558868 TMEM2Q9UHN6 1383 aa18.88■□□□□ 0.61
TPM1-215ENST00000558868 PUS7Q96PZ0 661 aaKnown RBP18.86■□□□□ 0.61
TPM1-215ENST00000558868 SENP3Q9H4L4 574 aaPredicted RBP18.86■□□□□ 0.61
TPM1-215ENST00000558868 QRICH2Q9H0J4 1663 aa18.85■□□□□ 0.61
TPM1-215ENST00000558868 YTHDC2Q9H6S0 1430 aaKnown RBP18.85■□□□□ 0.61
TPM1-215ENST00000558868 ARHGEF28Q8N1W1 1705 aaKnown RBP18.85■□□□□ 0.61
TPM1-215ENST00000558868 ASXL1Q8IXJ9 1541 aa18.84■□□□□ 0.61
TPM1-215ENST00000558868 RIMS1Q86UR5 1692 aaKnown RBP18.83■□□□□ 0.61
TPM1-215ENST00000558868 RALBP1Q15311 655 aa18.83■□□□□ 0.6
TPM1-215ENST00000558868 THEMISQ8N1K5 641 aaPredicted RBP18.83■□□□□ 0.6
TPM1-215ENST00000558868 PANK3Q9H999 370 aa18.83■□□□□ 0.6
TPM1-215ENST00000558868 EID1Q9Y6B2 187 aa18.83■□□□□ 0.6
TPM1-215ENST00000558868 LRPPRCP42704 1394 aaKnown RBP18.81■□□□□ 0.6
TPM1-215ENST00000558868 EVC2Q86UK5 1308 aa18.81■□□□□ 0.6
TPM1-215ENST00000558868 DLC1Q96QB1 1528 aa18.81■□□□□ 0.6
TPM1-215ENST00000558868 SLIT1O75093 1534 aa18.8■□□□□ 0.6
TPM1-215ENST00000558868 STK26Q9P289 416 aa18.8■□□□□ 0.6
TPM1-215ENST00000558868 PLEKHG1Q9ULL1 1385 aa18.8■□□□□ 0.6
TPM1-215ENST00000558868 ARHGAP23Q9P227 1491 aa18.79■□□□□ 0.6
TPM1-215ENST00000558868 PER1O15534 1290 aaPredicted RBP18.79■□□□□ 0.6
TPM1-215ENST00000558868 POGKQ9P215 609 aa18.79■□□□□ 0.6
TPM1-215ENST00000558868 SETD1AO15047 1707 aaKnown RBP18.79■□□□□ 0.6
TPM1-215ENST00000558868 PLPPR3Q6T4P5 718 aa18.78■□□□□ 0.6
TPM1-215ENST00000558868 BCANQ96GW7 911 aa18.78■□□□□ 0.6
TPM1-215ENST00000558868 ABCC11Q96J66 1382 aa18.78■□□□□ 0.6
TPM1-215ENST00000558868 NRXN3Q9Y4C0 1643 aa18.78■□□□□ 0.6
TPM1-215ENST00000558868 TXNDC2Q86VQ3 553 aa18.77■□□□□ 0.6
TPM1-215ENST00000558868 KNSTRNQ9Y448 316 aa18.77■□□□□ 0.6
TPM1-215ENST00000558868 MYOM1P52179 1685 aa18.76■□□□□ 0.59
TPM1-215ENST00000558868 SIRT1Q96EB6 747 aa18.76■□□□□ 0.59
TPM1-215ENST00000558868 PRAM1Q96QH2 718 aa18.75■□□□□ 0.59
TPM1-215ENST00000558868 MRS2Q9HD23 443 aa18.75■□□□□ 0.59
TPM1-215ENST00000558868 MYBBP1AQ9BQG0 1328 aaKnown RBP18.74■□□□□ 0.59
TPM1-215ENST00000558868 CEP170BQ9Y4F5 1589 aaPredicted RBP18.74■□□□□ 0.59
TPM1-215ENST00000558868 PARD3Q8TEW0 1356 aa18.73■□□□□ 0.59
TPM1-215ENST00000558868 NPC1L1Q9UHC9 1359 aa18.73■□□□□ 0.59
TPM1-215ENST00000558868 KNDC1Q76NI1 1749 aa18.72■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 42.7 ms