RNA–Protein interactions for RNA: ENST00000558518.5

LDLR-208, Transcript of low density lipoprotein receptor, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LDLR, Length 3,617 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-208ENST00000558518 TPRNQ4KMQ1 711 aa14.4□□□□□ -0.1
LDLR-208ENST00000558518 AMER1Q5JTC6 1135 aaPredicted RBP14.4□□□□□ -0.1
LDLR-208ENST00000558518 USP19O94966 1318 aa14.39□□□□□ -0.11
LDLR-208ENST00000558518 TRAK2O60296 914 aa14.39□□□□□ -0.11
LDLR-208ENST00000558518 HSP90AA2PQ14568 343 aaPredicted RBP14.39□□□□□ -0.11
LDLR-208ENST00000558518 MAPK8IP3Q9UPT6 1336 aa14.39□□□□□ -0.11
LDLR-208ENST00000558518 GLIPR1L2Q4G1C9 344 aa14.39□□□□□ -0.11
LDLR-208ENST00000558518 TSR2Q969E8 191 aaKnown RBP14.39□□□□□ -0.11
LDLR-208ENST00000558518 PRAG1Q86YV5 1406 aa14.39□□□□□ -0.11
LDLR-208ENST00000558518 U2AF1L5P0DN76 240 aaPredicted RBP14.38□□□□□ -0.11
LDLR-208ENST00000558518 U2AF1Q01081 240 aaKnown RBP eCLIP14.38□□□□□ -0.11
LDLR-208ENST00000558518 CFAP70Q5T0N1 1121 aa14.38□□□□□ -0.11
LDLR-208ENST00000558518 UHRF1BP1Q6BDS2 1440 aa14.38□□□□□ -0.11
LDLR-208ENST00000558518 CDCA8Q53HL2 280 aa14.38□□□□□ -0.11
LDLR-208ENST00000558518 HSCBQ8IWL3 235 aa14.38□□□□□ -0.11
LDLR-208ENST00000558518 MYH16Q9H6N6 1097 aa14.38□□□□□ -0.11
LDLR-208ENST00000558518 HSP90AB1P08238 724 aaKnown RBP14.37□□□□□ -0.11
LDLR-208ENST00000558518 MCM4P33991 863 aa14.37□□□□□ -0.11
LDLR-208ENST00000558518 WWC1Q8IX03 1113 aa14.37□□□□□ -0.11
LDLR-208ENST00000558518 TCP11L2Q8N4U5 519 aa14.37□□□□□ -0.11
LDLR-208ENST00000558518 C22orf23Q9BZE7 217 aa14.37□□□□□ -0.11
LDLR-208ENST00000558518 TRAK1Q9UPV9 953 aa14.37□□□□□ -0.11
LDLR-208ENST00000558518 RWDD1Q9H446 243 aaPredicted RBP14.36□□□□□ -0.11
LDLR-208ENST00000558518 POLR1AO95602 1720 aaPredicted RBP14.36□□□□□ -0.11
LDLR-208ENST00000558518 BLMP54132 1417 aaPredicted RBP14.36□□□□□ -0.11
LDLR-208ENST00000558518 SMC4Q9NTJ3 1288 aa14.36□□□□□ -0.11
LDLR-208ENST00000558518 PMFBP1Q8TBY8 1022 aa14.35□□□□□ -0.11
LDLR-208ENST00000558518 ZMYM4Q5VZL5 1548 aa14.34□□□□□ -0.11
LDLR-208ENST00000558518 LNPKQ9C0E8 428 aa14.34□□□□□ -0.11
LDLR-208ENST00000558518 PKNOX2Q96KN3 472 aa14.33□□□□□ -0.11
LDLR-208ENST00000558518 NKTRP30414 1462 aaKnown RBP14.33□□□□□ -0.12
LDLR-208ENST00000558518 SLC12A5Q9H2X9 1139 aa14.33□□□□□ -0.12
LDLR-208ENST00000558518 RARSP54136 660 aaKnown RBP14.32□□□□□ -0.12
LDLR-208ENST00000558518 DISP1Q96F81 1524 aa14.32□□□□□ -0.12
LDLR-208ENST00000558518 TBC1D32Q96NH3 1257 aa14.32□□□□□ -0.12
LDLR-208ENST00000558518 MAGI2Q86UL8 1455 aa14.32□□□□□ -0.12
LDLR-208ENST00000558518 ELL2O00472 640 aaPredicted RBP14.32□□□□□ -0.12
LDLR-208ENST00000558518 PDE3AQ14432 1141 aa14.32□□□□□ -0.12
LDLR-208ENST00000558518 APBB1O00213 710 aa14.31□□□□□ -0.12
LDLR-208ENST00000558518 CHMP5Q9NZZ3 219 aa14.31□□□□□ -0.12
LDLR-208ENST00000558518 A2MP01023 1474 aa14.3□□□□□ -0.12
LDLR-208ENST00000558518 COL17A1Q9UMD9 1497 aaPredicted RBP14.3□□□□□ -0.12
LDLR-208ENST00000558518 MTHFSP49914 203 aa14.3□□□□□ -0.12
LDLR-208ENST00000558518 RAPGEF6Q8TEU7 1601 aa14.3□□□□□ -0.12
LDLR-208ENST00000558518 FOXD4L5Q5VV16 416 aaPredicted RBP14.3□□□□□ -0.12
LDLR-208ENST00000558518 TMEM132EQ6IEE7 984 aa14.3□□□□□ -0.12
LDLR-208ENST00000558518 FOXD4L4Q8WXT5 416 aaPredicted RBP14.3□□□□□ -0.12
LDLR-208ENST00000558518 ZNF521Q96K83 1311 aa14.3□□□□□ -0.12
LDLR-208ENST00000558518 CARMIL2Q6F5E8 1435 aa14.3□□□□□ -0.12
LDLR-208ENST00000558518 CARD14Q9BXL6 1004 aa14.29□□□□□ -0.12
LDLR-208ENST00000558518 C1orf115Q9H7X2 142 aa14.29□□□□□ -0.12
LDLR-208ENST00000558518 GRPEL1Q9HAV7 217 aa14.29□□□□□ -0.12
LDLR-208ENST00000558518 ZMYND15Q9H091 742 aa14.28□□□□□ -0.12
LDLR-208ENST00000558518 PLEKHH2Q8IVE3 1493 aa14.28□□□□□ -0.12
LDLR-208ENST00000558518 EIF3AQ14152 1382 aaKnown RBP14.28□□□□□ -0.12
LDLR-208ENST00000558518 RBM10P98175 930 aaKnown RBP14.28□□□□□ -0.12
LDLR-208ENST00000558518 AFAP1Q8N556 730 aa14.28□□□□□ -0.12
LDLR-208ENST00000558518 DZIP1LQ8IYY4 767 aaKnown RBP14.28□□□□□ -0.12
LDLR-208ENST00000558518 ANTXR1Q9H6X2 564 aa14.27□□□□□ -0.12
LDLR-208ENST00000558518 FAM135AQ9P2D6 1515 aa14.27□□□□□ -0.12
LDLR-208ENST00000558518 EXOSC9Q06265 439 aaKnown RBP14.27□□□□□ -0.13
LDLR-208ENST00000558518 KIF3BO15066 747 aa14.26□□□□□ -0.13
LDLR-208ENST00000558518 ZKSCAN2Q63HK3 967 aa14.26□□□□□ -0.13
LDLR-208ENST00000558518 ANP32BQ92688 251 aaKnown RBP14.26□□□□□ -0.13
LDLR-208ENST00000558518 ESPNB1AK53 854 aa14.26□□□□□ -0.13
LDLR-208ENST00000558518 KIAA0556O60303 1618 aa14.26□□□□□ -0.13
LDLR-208ENST00000558518 ARHGEF12Q9NZN5 1544 aa14.26□□□□□ -0.13
LDLR-208ENST00000558518 CFAP53Q96M91 514 aa14.26□□□□□ -0.13
LDLR-208ENST00000558518 RUNDC1Q96C34 613 aa14.25□□□□□ -0.13
LDLR-208ENST00000558518 RBM42Q9BTD8 480 aaKnown RBP14.25□□□□□ -0.13
LDLR-208ENST00000558518 STK26Q9P289 416 aa14.25□□□□□ -0.13
LDLR-208ENST00000558518 ANKRD45Q5TZF3 282 aa14.25□□□□□ -0.13
LDLR-208ENST00000558518 MAGI1Q96QZ7 1491 aaPredicted RBP14.24□□□□□ -0.13
LDLR-208ENST00000558518 MRE11P49959 708 aa14.24□□□□□ -0.13
LDLR-208ENST00000558518 KIF21AQ7Z4S6 1674 aa14.24□□□□□ -0.13
LDLR-208ENST00000558518 FOXD4L6Q3SYB3 417 aaPredicted RBP14.23□□□□□ -0.13
LDLR-208ENST00000558518 FOXD4L3Q6VB84 417 aaPredicted RBP14.23□□□□□ -0.13
LDLR-208ENST00000558518 MPNDQ8N594 471 aa14.23□□□□□ -0.13
LDLR-208ENST00000558518 MVPQ14764 893 aaKnown RBP14.22□□□□□ -0.13
LDLR-208ENST00000558518 TNPO1Q92973 898 aaKnown RBP14.22□□□□□ -0.13
LDLR-208ENST00000558518 ADGRL2O95490 1459 aa14.22□□□□□ -0.13
LDLR-208ENST00000558518 NOB1Q9ULX3 412 aaKnown RBP14.22□□□□□ -0.13
LDLR-208ENST00000558518 ADAMTS12P58397 1594 aa14.22□□□□□ -0.13
LDLR-208ENST00000558518 TRMT2AQ8IZ69 625 aaKnown RBP14.22□□□□□ -0.13
LDLR-208ENST00000558518 DDX49Q9Y6V7 483 aaKnown RBP14.22□□□□□ -0.13
LDLR-208ENST00000558518 ERBB4Q15303 1308 aa14.22□□□□□ -0.13
LDLR-208ENST00000558518 GAS2L3Q86XJ1 694 aa14.21□□□□□ -0.13
LDLR-208ENST00000558518 PLA2R1Q13018 1463 aa14.21□□□□□ -0.13
LDLR-208ENST00000558518 ADGRF5Q8IZF2 1346 aa14.21□□□□□ -0.13
LDLR-208ENST00000558518 KDM5DQ9BY66 1539 aa14.21□□□□□ -0.14
LDLR-208ENST00000558518 DDX11L8A8MPP1 907 aa14.21□□□□□ -0.14
LDLR-208ENST00000558518 FAM13BQ9NYF5 915 aa14.21□□□□□ -0.14
LDLR-208ENST00000558518 GGNBP2Q9H3C7 697 aa14.2□□□□□ -0.14
LDLR-208ENST00000558518 ATP10BO94823 1461 aa14.2□□□□□ -0.14
LDLR-208ENST00000558518 GRIN2AQ12879 1464 aa14.2□□□□□ -0.14
LDLR-208ENST00000558518 TMEM57Q8N5G2 664 aa14.2□□□□□ -0.14
LDLR-208ENST00000558518 SSH1Q8WYL5 1049 aa14.2□□□□□ -0.14
LDLR-208ENST00000558518 GBP4Q96PP9 640 aa14.2□□□□□ -0.14
LDLR-208ENST00000558518 PTPRGP23470 1445 aa14.2□□□□□ -0.14
LDLR-208ENST00000558518 NOL8Q76FK4 1167 aaKnown RBP14.2□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 77.7 ms