RNA–Protein interactions for RNA: ENST00000558218.5

USP3-207, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 3

Gene USP3, Length 717 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-207ENST00000558218 IDI1Q13907 227 aa15.4■□□□□ 0.06
USP3-207ENST00000558218 EID1Q9Y6B2 187 aa15.4■□□□□ 0.06
USP3-207ENST00000558218 NOS1P29475 1434 aa15.4■□□□□ 0.06
USP3-207ENST00000558218 TXNDC2Q86VQ3 553 aa15.39■□□□□ 0.05
USP3-207ENST00000558218 PPARGC1BQ86YN6 1023 aaKnown RBP15.39■□□□□ 0.05
USP3-207ENST00000558218 STAG3Q9UJ98 1225 aa15.39■□□□□ 0.05
USP3-207ENST00000558218 UBR1Q8IWV7 1749 aa15.39■□□□□ 0.05
USP3-207ENST00000558218 KDM5AP29375 1690 aaKnown RBP15.38■□□□□ 0.05
USP3-207ENST00000558218 SLIT1O75093 1534 aa15.38■□□□□ 0.05
USP3-207ENST00000558218 EFCAB6Q5THR3 1501 aa15.38■□□□□ 0.05
USP3-207ENST00000558218 ARHGAP23Q9P227 1491 aa15.38■□□□□ 0.05
USP3-207ENST00000558218 CPS1P31327 1500 aa15.38■□□□□ 0.05
USP3-207ENST00000558218 RRBP1Q9P2E9 1410 aaKnown RBP15.37■□□□□ 0.05
USP3-207ENST00000558218 SCAF11Q99590 1463 aaKnown RBP15.36■□□□□ 0.05
USP3-207ENST00000558218 TMEM2Q9UHN6 1383 aa15.36■□□□□ 0.05
USP3-207ENST00000558218 LTKP29376 864 aa15.35■□□□□ 0.05
USP3-207ENST00000558218 ITGAEP38570 1179 aa15.35■□□□□ 0.05
USP3-207ENST00000558218 HDGFP51858 240 aaKnown RBP15.35■□□□□ 0.05
USP3-207ENST00000558218 UNC13BO14795 1591 aa15.35■□□□□ 0.05
USP3-207ENST00000558218 TET3O43151 1660 aa15.35■□□□□ 0.05
USP3-207ENST00000558218 IQGAP1P46940 1657 aa15.35■□□□□ 0.05
USP3-207ENST00000558218 PIK3C2BO00750 1634 aa15.33■□□□□ 0.04
USP3-207ENST00000558218 NUP155O75694 1391 aa15.33■□□□□ 0.04
USP3-207ENST00000558218 SYNMO15061 1565 aa15.32■□□□□ 0.04
USP3-207ENST00000558218 GCC2Q8IWJ2 1684 aa15.32■□□□□ 0.04
USP3-207ENST00000558218 UBAP1LF5GYI3 381 aa15.31■□□□□ 0.04
USP3-207ENST00000558218 TOM1O60784 492 aa15.31■□□□□ 0.04
USP3-207ENST00000558218 IQGAP3Q86VI3 1631 aa15.3■□□□□ 0.04
USP3-207ENST00000558218 ABCF1Q8NE71 845 aaKnown RBP eCLIP15.27■□□□□ 0.04
USP3-207ENST00000558218 ADGRB3O60242 1522 aa15.27■□□□□ 0.03
USP3-207ENST00000558218 E9PCH4 1651 aa15.25■□□□□ 0.03
USP3-207ENST00000558218 NAIPQ13075 1403 aa15.25■□□□□ 0.03
USP3-207ENST00000558218 KCNA6P17658 529 aa15.24■□□□□ 0.03
USP3-207ENST00000558218 LRRC7Q96NW7 1537 aa15.23■□□□□ 0.03
USP3-207ENST00000558218 TMEM131LA2VDJ0 1609 aa15.23■□□□□ 0.03
USP3-207ENST00000558218 ACIN1Q9UKV3 1341 aaKnown RBP15.22■□□□□ 0.03
USP3-207ENST00000558218 HFM1A2PYH4 1435 aa15.22■□□□□ 0.03
USP3-207ENST00000558218 ZFYVE9O95405 1425 aa15.22■□□□□ 0.03
USP3-207ENST00000558218 PLEKHG1Q9ULL1 1385 aa15.22■□□□□ 0.03
USP3-207ENST00000558218 TBX22Q9Y458 520 aa15.21■□□□□ 0.03
USP3-207ENST00000558218 DISP3Q9P2K9 1392 aa15.21■□□□□ 0.02
USP3-207ENST00000558218 STRCP1A6NGW2 1772 aa15.21■□□□□ 0.02
USP3-207ENST00000558218 RIMS2Q9UQ26 1411 aa15.2■□□□□ 0.02
USP3-207ENST00000558218 PPP1R15AO75807 674 aaPredicted RBP15.2■□□□□ 0.02
USP3-207ENST00000558218 CHGAP10645 457 aaKnown RBP15.2■□□□□ 0.02
USP3-207ENST00000558218 BCANQ96GW7 911 aa15.2■□□□□ 0.02
USP3-207ENST00000558218 SLC26A8Q96RN1 970 aa15.2■□□□□ 0.02
USP3-207ENST00000558218 AKT1S1Q96B36 256 aa15.19■□□□□ 0.02
USP3-207ENST00000558218 SPDYE2BA6NHP3 402 aa15.17■□□□□ 0.02
USP3-207ENST00000558218 SPDYE6P0CI01 402 aa15.17■□□□□ 0.02
USP3-207ENST00000558218 PIP4K2BP78356 416 aa15.17■□□□□ 0.02
USP3-207ENST00000558218 SPDYE2Q495Y8 402 aa15.17■□□□□ 0.02
USP3-207ENST00000558218 ZNF692Q9BU19 519 aaPredicted RBP15.17■□□□□ 0.02
USP3-207ENST00000558218 MYO5BQ9ULV0 1848 aa15.17■□□□□ 0.02
USP3-207ENST00000558218 ILDR2Q71H61 639 aa15.16■□□□□ 0.02
USP3-207ENST00000558218 PROSER2Q86WR7 435 aaPredicted RBP15.16■□□□□ 0.02
USP3-207ENST00000558218 TRIM52Q96A61 297 aa15.16■□□□□ 0.02
USP3-207ENST00000558218 PIK3R4Q99570 1358 aa15.15■□□□□ 0.02
USP3-207ENST00000558218 SPHKAPQ2M3C7 1700 aa15.14■□□□□ 0.01
USP3-207ENST00000558218 NKTRP30414 1462 aaKnown RBP15.14■□□□□ 0.01
USP3-207ENST00000558218 HSPA1LP34931 641 aa15.13■□□□□ 0.01
USP3-207ENST00000558218 REM2Q8IYK8 340 aaPredicted RBP15.13■□□□□ 0.01
USP3-207ENST00000558218 NCOA3Q9Y6Q9 1424 aa15.13■□□□□ 0.01
USP3-207ENST00000558218 TMEM94Q12767 1356 aa15.12■□□□□ 0.01
USP3-207ENST00000558218 NWD1Q149M9 1564 aa15.11■□□□□ 0.01
USP3-207ENST00000558218 ALKQ9UM73 1620 aa15.11■□□□□ 0.01
USP3-207ENST00000558218 CHD2O14647 1828 aaKnown RBP15.11■□□□□ 0.01
USP3-207ENST00000558218 TRPM2O94759 1503 aa15.11■□□□□ 0.01
USP3-207ENST00000558218 DIP2AQ14689 1571 aa15.11■□□□□ 0.01
USP3-207ENST00000558218 ADAMTS13Q76LX8 1427 aa15.1■□□□□ 0.01
USP3-207ENST00000558218 ZNF326Q5BKZ1 582 aaKnown RBP15.1■□□□□ 0.01
USP3-207ENST00000558218 RPGRIP1LQ68CZ1 1315 aa15.1■□□□□ 0.01
USP3-207ENST00000558218 XIRP1Q702N8 1843 aaKnown RBP15.1■□□□□ 0.01
USP3-207ENST00000558218 NUTM2DQ5VT03 806 aaPredicted RBP15.09■□□□□ 0.01
USP3-207ENST00000558218 FAM135BQ49AJ0 1406 aa15.09■□□□□ 0.01
USP3-207ENST00000558218 VGFO15240 615 aaPredicted RBP15.08■□□□□ 0
USP3-207ENST00000558218 MSH6P52701 1360 aa15.07■□□□□ 0
USP3-207ENST00000558218 KIF1BO60333 1816 aa15.06■□□□□ 0
USP3-207ENST00000558218 MPHOSPH9Q99550 1183 aa15.06■□□□□ 0
USP3-207ENST00000558218 C19orf44Q9H6X5 657 aa15.05■□□□□ -0
USP3-207ENST00000558218 AMOTL2Q9Y2J4 779 aa15.05■□□□□ -0
USP3-207ENST00000558218 SETBP1Q9Y6X0 1596 aa15.05■□□□□ -0
USP3-207ENST00000558218 CLTCL1P53675 1640 aa15.05■□□□□ -0
USP3-207ENST00000558218 SLAIN2Q9P270 581 aa15.04■□□□□ -0
USP3-207ENST00000558218 SSUH2Q9Y2M2 353 aa15.04■□□□□ -0
USP3-207ENST00000558218 SETD5Q9C0A6 1442 aa15.03■□□□□ -0
USP3-207ENST00000558218 HRCP23327 699 aa15.02■□□□□ -0
USP3-207ENST00000558218 CADPS2Q86UW7 1296 aa15.02■□□□□ -0
USP3-207ENST00000558218 RBM33Q96EV2 1170 aaKnown RBP15.02■□□□□ -0
USP3-207ENST00000558218 NEXMIFQ5QGS0 1516 aa15.02□□□□□ -0.01
USP3-207ENST00000558218 CHRDL2Q6WN34 429 aa15.01□□□□□ -0.01
USP3-207ENST00000558218 PITPNM1O00562 1244 aa15□□□□□ -0.01
USP3-207ENST00000558218 C14orf37Q86TY3 774 aa15□□□□□ -0.01
USP3-207ENST00000558218 ATF3P18847 181 aa14.99□□□□□ -0.01
USP3-207ENST00000558218 CCDC144AA2RUR9 1427 aa14.99□□□□□ -0.01
USP3-207ENST00000558218 PTPRUQ92729 1446 aa14.99□□□□□ -0.01
USP3-207ENST00000558218 NRXN3Q9Y4C0 1643 aa14.99□□□□□ -0.01
USP3-207ENST00000558218 METP08581 1390 aa14.98□□□□□ -0.01
USP3-207ENST00000558218 SPDYE4A6NLX3 237 aa14.97□□□□□ -0.01
USP3-207ENST00000558218 DCCP43146 1447 aa14.96□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms