RNA–Protein interactions for RNA: ENST00000557658.5

VIPAS39-211, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VIPAS39, Length 2,562 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-211ENST00000557658 NFKBIBQ15653 356 aa15.41■□□□□ 0.06
VIPAS39-211ENST00000557658 SYNMO15061 1565 aa15.41■□□□□ 0.06
VIPAS39-211ENST00000557658 GSE1Q14687 1217 aa15.4■□□□□ 0.06
VIPAS39-211ENST00000557658 AMER1Q5JTC6 1135 aaPredicted RBP15.4■□□□□ 0.06
VIPAS39-211ENST00000557658 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP15.4■□□□□ 0.06
VIPAS39-211ENST00000557658 MADDQ8WXG6 1647 aa15.39■□□□□ 0.05
VIPAS39-211ENST00000557658 PIK3C2GO75747 1445 aa15.39■□□□□ 0.05
VIPAS39-211ENST00000557658 C8orf34Q49A92 452 aa15.39■□□□□ 0.05
VIPAS39-211ENST00000557658 ASXL1Q8IXJ9 1541 aa15.39■□□□□ 0.05
VIPAS39-211ENST00000557658 EIF3AQ14152 1382 aaKnown RBP15.39■□□□□ 0.05
VIPAS39-211ENST00000557658 SLFN5Q08AF3 891 aa15.38■□□□□ 0.05
VIPAS39-211ENST00000557658 SLC4A3P48751 1232 aa15.37■□□□□ 0.05
VIPAS39-211ENST00000557658 NPC1L1Q9UHC9 1359 aa15.36■□□□□ 0.05
VIPAS39-211ENST00000557658 SCAF11Q99590 1463 aaKnown RBP15.36■□□□□ 0.05
VIPAS39-211ENST00000557658 TRMT2AQ8IZ69 625 aaKnown RBP15.35■□□□□ 0.05
VIPAS39-211ENST00000557658 RTN4Q9NQC3 1192 aaKnown RBP15.35■□□□□ 0.05
VIPAS39-211ENST00000557658 ABCC2Q92887 1545 aa15.35■□□□□ 0.05
VIPAS39-211ENST00000557658 STAC3Q96MF2 364 aa15.35■□□□□ 0.05
VIPAS39-211ENST00000557658 SPHKAPQ2M3C7 1700 aa15.35■□□□□ 0.05
VIPAS39-211ENST00000557658 NKTRP30414 1462 aaKnown RBP15.34■□□□□ 0.05
VIPAS39-211ENST00000557658 RGS3P49796 1198 aa15.34■□□□□ 0.05
VIPAS39-211ENST00000557658 SCAPERQ9BY12 1400 aa15.34■□□□□ 0.05
VIPAS39-211ENST00000557658 MYOM1P52179 1685 aa15.33■□□□□ 0.04
VIPAS39-211ENST00000557658 ANO8Q9HCE9 1232 aaPredicted RBP15.32■□□□□ 0.04
VIPAS39-211ENST00000557658 CEP152O94986 1710 aa15.32■□□□□ 0.04
VIPAS39-211ENST00000557658 CCDC146Q8IYE0 955 aa15.31■□□□□ 0.04
VIPAS39-211ENST00000557658 TRPM2O94759 1503 aa15.31■□□□□ 0.04
VIPAS39-211ENST00000557658 VIRMAQ69YN4 1812 aaKnown RBP15.31■□□□□ 0.04
VIPAS39-211ENST00000557658 KDM5AP29375 1690 aaKnown RBP15.31■□□□□ 0.04
VIPAS39-211ENST00000557658 E9PSI1 815 aa15.31■□□□□ 0.04
VIPAS39-211ENST00000557658 NGEFQ8N5V2 710 aa15.31■□□□□ 0.04
VIPAS39-211ENST00000557658 FRAT1Q92837 279 aaPredicted RBP15.31■□□□□ 0.04
VIPAS39-211ENST00000557658 APAF1O14727 1248 aa15.3■□□□□ 0.04
VIPAS39-211ENST00000557658 BRPF3Q9ULD4 1205 aa15.29■□□□□ 0.04
VIPAS39-211ENST00000557658 BCAR3O75815 825 aa15.28■□□□□ 0.04
VIPAS39-211ENST00000557658 SPINK5Q9NQ38 1064 aaPredicted RBP15.28■□□□□ 0.04
VIPAS39-211ENST00000557658 KIAA1210Q9ULL0 1709 aa15.28■□□□□ 0.04
VIPAS39-211ENST00000557658 PLCH2O75038 1416 aa15.28■□□□□ 0.04
VIPAS39-211ENST00000557658 CGNL1Q0VF96 1302 aa15.28■□□□□ 0.04
VIPAS39-211ENST00000557658 SLC24A1O60721 1099 aa15.28■□□□□ 0.04
VIPAS39-211ENST00000557658 EFCAB2Q5VUJ9 269 aa15.28■□□□□ 0.04
VIPAS39-211ENST00000557658 NINLQ9Y2I6 1382 aa15.27■□□□□ 0.04
VIPAS39-211ENST00000557658 PTPRTO14522 1441 aa15.27■□□□□ 0.03
VIPAS39-211ENST00000557658 CLTCL1P53675 1640 aa15.26■□□□□ 0.03
VIPAS39-211ENST00000557658 ABCC1P33527 1531 aa15.26■□□□□ 0.03
VIPAS39-211ENST00000557658 PDE3AQ14432 1141 aa15.26■□□□□ 0.03
VIPAS39-211ENST00000557658 FRAT2O75474 233 aaPredicted RBP15.26■□□□□ 0.03
VIPAS39-211ENST00000557658 MAPK8IP3Q9UPT6 1336 aa15.25■□□□□ 0.03
VIPAS39-211ENST00000557658 SHROOM2Q13796 1616 aa15.24■□□□□ 0.03
VIPAS39-211ENST00000557658 IGHDP01880 384 aa15.24■□□□□ 0.03
VIPAS39-211ENST00000557658 TRAPPC8Q9Y2L5 1435 aa15.24■□□□□ 0.03
VIPAS39-211ENST00000557658 CENPJQ9HC77 1338 aaPredicted RBP15.23■□□□□ 0.03
VIPAS39-211ENST00000557658 CANXP27824 592 aaKnown RBP15.23■□□□□ 0.03
VIPAS39-211ENST00000557658 CHD1O14646 1710 aa15.22■□□□□ 0.03
VIPAS39-211ENST00000557658 TET3O43151 1660 aa15.22■□□□□ 0.03
VIPAS39-211ENST00000557658 CLUAP1Q96AJ1 413 aa15.22■□□□□ 0.03
VIPAS39-211ENST00000557658 SPAG9O60271 1321 aaKnown RBP15.22■□□□□ 0.03
VIPAS39-211ENST00000557658 RTEL1-TNFRSF6BF6WH68 1400 aa15.21■□□□□ 0.03
VIPAS39-211ENST00000557658 DEPDC5O75140 1603 aa15.21■□□□□ 0.03
VIPAS39-211ENST00000557658 USP19O94966 1318 aa15.21■□□□□ 0.03
VIPAS39-211ENST00000557658 ERVK-7P63135 1459 aa15.21■□□□□ 0.02
VIPAS39-211ENST00000557658 BECN1Q14457 450 aa15.21■□□□□ 0.02
VIPAS39-211ENST00000557658 NEURL4Q96JN8 1562 aa15.2■□□□□ 0.02
VIPAS39-211ENST00000557658 DMRT2Q9Y5R5 561 aa15.2■□□□□ 0.02
VIPAS39-211ENST00000557658 POLR3AO14802 1390 aaPredicted RBP15.19■□□□□ 0.02
VIPAS39-211ENST00000557658 KANK1Q14678 1352 aa15.19■□□□□ 0.02
VIPAS39-211ENST00000557658 WWC1Q8IX03 1113 aa15.19■□□□□ 0.02
VIPAS39-211ENST00000557658 COG6Q9Y2V7 657 aa15.19■□□□□ 0.02
VIPAS39-211ENST00000557658 ZFYVE16Q7Z3T8 1539 aa15.18■□□□□ 0.02
VIPAS39-211ENST00000557658 AAMPQ13685 434 aa15.18■□□□□ 0.02
VIPAS39-211ENST00000557658 CARD14Q9BXL6 1004 aa15.18■□□□□ 0.02
VIPAS39-211ENST00000557658 MAP3K4Q9Y6R4 1608 aa15.18■□□□□ 0.02
VIPAS39-211ENST00000557658 PANK1Q8TE04 598 aa15.18■□□□□ 0.02
VIPAS39-211ENST00000557658 ZCCHC11Q5TAX3 1644 aaKnown RBP15.17■□□□□ 0.02
VIPAS39-211ENST00000557658 MYOM2P54296 1465 aa15.17■□□□□ 0.02
VIPAS39-211ENST00000557658 ABCA6Q8N139 1617 aa15.17■□□□□ 0.02
VIPAS39-211ENST00000557658 PMFBP1Q8TBY8 1022 aa15.17■□□□□ 0.02
VIPAS39-211ENST00000557658 PRKCSHP14314 528 aaPredicted RBP15.16■□□□□ 0.02
VIPAS39-211ENST00000557658 CFAP70Q5T0N1 1121 aa15.16■□□□□ 0.02
VIPAS39-211ENST00000557658 ERCC6L2Q5T890 1561 aa15.16■□□□□ 0.02
VIPAS39-211ENST00000557658 SEC24BO95487 1268 aa15.15■□□□□ 0.02
VIPAS39-211ENST00000557658 VWDEQ8N2E2 1590 aa15.15■□□□□ 0.02
VIPAS39-211ENST00000557658 ZMYM3Q14202 1370 aa15.14■□□□□ 0.01
VIPAS39-211ENST00000557658 AFAP1Q8N556 730 aa15.14■□□□□ 0.01
VIPAS39-211ENST00000557658 UPF2Q9HAU5 1272 aaKnown RBP15.14■□□□□ 0.01
VIPAS39-211ENST00000557658 KIF1BO60333 1816 aa15.14■□□□□ 0.01
VIPAS39-211ENST00000557658 ZBTB4Q9P1Z0 1013 aaPredicted RBP15.14■□□□□ 0.01
VIPAS39-211ENST00000557658 MYO3AQ8NEV4 1616 aa15.14■□□□□ 0.01
VIPAS39-211ENST00000557658 ARAP3Q8WWN8 1544 aa15.13■□□□□ 0.01
VIPAS39-211ENST00000557658 NLRP1Q9C000 1473 aa15.13■□□□□ 0.01
VIPAS39-211ENST00000557658 SBNO2Q9Y2G9 1366 aa15.13■□□□□ 0.01
VIPAS39-211ENST00000557658 RUNDC1Q96C34 613 aa15.13■□□□□ 0.01
VIPAS39-211ENST00000557658 SHPRHQ149N8 1683 aa15.13■□□□□ 0.01
VIPAS39-211ENST00000557658 RARSP54136 660 aaKnown RBP15.13■□□□□ 0.01
VIPAS39-211ENST00000557658 ADGRF5Q8IZF2 1346 aa15.12■□□□□ 0.01
VIPAS39-211ENST00000557658 IFT172Q9UG01 1749 aa15.11■□□□□ 0.01
VIPAS39-211ENST00000557658 UHRF1BP1LA0JNW5 1464 aa15.11■□□□□ 0.01
VIPAS39-211ENST00000557658 MORC1Q86VD1 984 aa15.11■□□□□ 0.01
VIPAS39-211ENST00000557658 FAM43AQ8N2R8 423 aa15.11■□□□□ 0.01
VIPAS39-211ENST00000557658 WDR63Q8IWG1 891 aa15.11■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms