RNA–Protein interactions for RNA: ENST00000557427.5

SHMT2-230, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 569 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-230ENST00000557427 NUTM2BA6NNL0 878 aaPredicted RBP19.61■□□□□ 0.73
SHMT2-230ENST00000557427 NUTM2EB1AL46 878 aaPredicted RBP19.61■□□□□ 0.73
SHMT2-230ENST00000557427 NUTM2AQ8IVF1 878 aaPredicted RBP19.61■□□□□ 0.73
SHMT2-230ENST00000557427 DIP2AQ14689 1571 aa19.61■□□□□ 0.73
SHMT2-230ENST00000557427 RGS12O14924 1447 aa19.6■□□□□ 0.73
SHMT2-230ENST00000557427 AFF2P51816 1311 aa19.6■□□□□ 0.73
SHMT2-230ENST00000557427 BCANQ96GW7 911 aa19.6■□□□□ 0.73
SHMT2-230ENST00000557427 KIF15Q9NS87 1388 aa19.58■□□□□ 0.73
SHMT2-230ENST00000557427 ADGRB3O60242 1522 aa19.58■□□□□ 0.73
SHMT2-230ENST00000557427 RRP7BPQ9NSQ0 103 aa19.57■□□□□ 0.72
SHMT2-230ENST00000557427 NOS1P29475 1434 aa19.57■□□□□ 0.72
SHMT2-230ENST00000557427 ERBINQ96RT1 1412 aa19.57■□□□□ 0.72
SHMT2-230ENST00000557427 NCOA3Q9Y6Q9 1424 aa19.57■□□□□ 0.72
SHMT2-230ENST00000557427 SIPA1L2Q9P2F8 1722 aaPredicted RBP19.56■□□□□ 0.72
SHMT2-230ENST00000557427 ZFYVE9O95405 1425 aa19.55■□□□□ 0.72
SHMT2-230ENST00000557427 BRINP3Q76B58 766 aa19.55■□□□□ 0.72
SHMT2-230ENST00000557427 LMTK2Q8IWU2 1503 aa19.55■□□□□ 0.72
SHMT2-230ENST00000557427 PLEKHG1Q9ULL1 1385 aa19.55■□□□□ 0.72
SHMT2-230ENST00000557427 CADPS2Q86UW7 1296 aa19.54■□□□□ 0.72
SHMT2-230ENST00000557427 C19orf44Q9H6X5 657 aa19.53■□□□□ 0.72
SHMT2-230ENST00000557427 QTRT2Q9H974 415 aaKnown RBP19.53■□□□□ 0.72
SHMT2-230ENST00000557427 MYOM3Q5VTT5 1437 aa19.52■□□□□ 0.72
SHMT2-230ENST00000557427 RBM6P78332 1123 aaKnown RBP19.52■□□□□ 0.72
SHMT2-230ENST00000557427 C14orf37Q86TY3 774 aa19.52■□□□□ 0.72
SHMT2-230ENST00000557427 TBX22Q9Y458 520 aa19.52■□□□□ 0.72
SHMT2-230ENST00000557427 NUTM2DQ5VT03 806 aaPredicted RBP19.51■□□□□ 0.71
SHMT2-230ENST00000557427 KANK1Q14678 1352 aa19.51■□□□□ 0.71
SHMT2-230ENST00000557427 ABCC5O15440 1437 aa19.51■□□□□ 0.71
SHMT2-230ENST00000557427 ATF3P18847 181 aa19.5■□□□□ 0.71
SHMT2-230ENST00000557427 SLC52A1Q9NWF4 448 aa19.5■□□□□ 0.71
SHMT2-230ENST00000557427 SETBP1Q9Y6X0 1596 aa19.49■□□□□ 0.71
SHMT2-230ENST00000557427 KANK4Q5T7N3 995 aaPredicted RBP19.48■□□□□ 0.71
SHMT2-230ENST00000557427 C8orf37Q96NL8 207 aa19.48■□□□□ 0.71
SHMT2-230ENST00000557427 ADAMTS13Q76LX8 1427 aa19.48■□□□□ 0.71
SHMT2-230ENST00000557427 SETD5Q9C0A6 1442 aa19.48■□□□□ 0.71
SHMT2-230ENST00000557427 RIMS2Q9UQ26 1411 aa19.48■□□□□ 0.71
SHMT2-230ENST00000557427 MYO5BQ9ULV0 1848 aa19.48■□□□□ 0.71
SHMT2-230ENST00000557427 PPP1R15AO75807 674 aaPredicted RBP19.45■□□□□ 0.7
SHMT2-230ENST00000557427 ZRANB1Q9UGI0 708 aa19.45■□□□□ 0.7
SHMT2-230ENST00000557427 CROCC2H7BZ55 1655 aa19.45■□□□□ 0.7
SHMT2-230ENST00000557427 ASXL1Q8IXJ9 1541 aa19.45■□□□□ 0.7
SHMT2-230ENST00000557427 ATAD2Q6PL18 1390 aa19.43■□□□□ 0.7
SHMT2-230ENST00000557427 DDX17Q92841 729 aaKnown RBP19.42■□□□□ 0.7
SHMT2-230ENST00000557427 TMEM131LA2VDJ0 1609 aa19.42■□□□□ 0.7
SHMT2-230ENST00000557427 PTPRUQ92729 1446 aa19.42■□□□□ 0.7
SHMT2-230ENST00000557427 NHSL1Q5SYE7 1610 aa19.41■□□□□ 0.7
SHMT2-230ENST00000557427 GCC2Q8IWJ2 1684 aa19.41■□□□□ 0.7
SHMT2-230ENST00000557427 LRRC59Q96AG4 307 aaKnown RBP19.41■□□□□ 0.7
SHMT2-230ENST00000557427 PNPLA6Q8IY17 1366 aa19.41■□□□□ 0.7
SHMT2-230ENST00000557427 VPS8Q8N3P4 1428 aa19.41■□□□□ 0.7
SHMT2-230ENST00000557427 HDGFP51858 240 aaKnown RBP19.4■□□□□ 0.7
SHMT2-230ENST00000557427 AMOTL2Q9Y2J4 779 aa19.4■□□□□ 0.7
SHMT2-230ENST00000557427 MST1RQ04912 1400 aa19.4■□□□□ 0.7
SHMT2-230ENST00000557427 PIK3R4Q99570 1358 aa19.39■□□□□ 0.69
SHMT2-230ENST00000557427 DAPK1P53355 1430 aa19.39■□□□□ 0.69
SHMT2-230ENST00000557427 NGLY1Q96IV0 654 aa19.38■□□□□ 0.69
SHMT2-230ENST00000557427 EP400Q96L91 3159 aa19.38■□□□□ 0.69
SHMT2-230ENST00000557427 DCCP43146 1447 aa19.37■□□□□ 0.69
SHMT2-230ENST00000557427 ADAMTS2O95450 1211 aa19.37■□□□□ 0.69
SHMT2-230ENST00000557427 CHIC2Q9UKJ5 165 aa19.37■□□□□ 0.69
SHMT2-230ENST00000557427 APLP2Q06481 763 aa19.36■□□□□ 0.69
SHMT2-230ENST00000557427 RPRD2Q5VT52 1461 aaKnown RBP19.35■□□□□ 0.69
SHMT2-230ENST00000557427 ABCF1Q8NE71 845 aaKnown RBP eCLIP19.35■□□□□ 0.69
SHMT2-230ENST00000557427 ANKRD30AQ9BXX3 1397 aa19.33■□□□□ 0.69
SHMT2-230ENST00000557427 PTPN23Q9H3S7 1636 aa19.33■□□□□ 0.69
SHMT2-230ENST00000557427 CHGAP10645 457 aaKnown RBP19.32■□□□□ 0.68
SHMT2-230ENST00000557427 FOXD1Q16676 465 aa19.32■□□□□ 0.68
SHMT2-230ENST00000557427 USP21Q9UK80 565 aa19.32■□□□□ 0.68
SHMT2-230ENST00000557427 TRPM2O94759 1503 aa19.31■□□□□ 0.68
SHMT2-230ENST00000557427 TRPC5Q9UL62 973 aaPredicted RBP19.31■□□□□ 0.68
SHMT2-230ENST00000557427 FNBP4Q8N3X1 1017 aaPredicted RBP19.3■□□□□ 0.68
SHMT2-230ENST00000557427 ATRNO75882 1429 aa19.29■□□□□ 0.68
SHMT2-230ENST00000557427 XRN1Q8IZH2 1706 aaKnown RBP19.28■□□□□ 0.68
SHMT2-230ENST00000557427 CCDC125Q86Z20 511 aa19.28■□□□□ 0.68
SHMT2-230ENST00000557427 UNC13BO14795 1591 aa19.27■□□□□ 0.68
SHMT2-230ENST00000557427 NRXN3Q9Y4C0 1643 aa19.25■□□□□ 0.67
SHMT2-230ENST00000557427 METP08581 1390 aa19.23■□□□□ 0.67
SHMT2-230ENST00000557427 SOS2Q07890 1332 aaPredicted RBP19.23■□□□□ 0.67
SHMT2-230ENST00000557427 PTCH1Q13635 1447 aa19.22■□□□□ 0.67
SHMT2-230ENST00000557427 ADGRL3Q9HAR2 1447 aa19.22■□□□□ 0.67
SHMT2-230ENST00000557427 ADGRL2O95490 1459 aa19.22■□□□□ 0.67
SHMT2-230ENST00000557427 C1orf167Q5SNV9 1468 aa19.22■□□□□ 0.67
SHMT2-230ENST00000557427 BCL9LQ86UU0 1499 aa19.22■□□□□ 0.67
SHMT2-230ENST00000557427 LAMC1P11047 1609 aa19.22■□□□□ 0.67
SHMT2-230ENST00000557427 ANKRD50Q9ULJ7 1429 aa19.21■□□□□ 0.67
SHMT2-230ENST00000557427 DEFB132Q7Z7B7 95 aa19.2■□□□□ 0.66
SHMT2-230ENST00000557427 NALCNQ8IZF0 1738 aa19.2■□□□□ 0.66
SHMT2-230ENST00000557427 ORAI2Q96SN7 254 aa19.19■□□□□ 0.66
SHMT2-230ENST00000557427 E9PCH4 1651 aa19.19■□□□□ 0.66
SHMT2-230ENST00000557427 LRP5O75197 1615 aa19.18■□□□□ 0.66
SHMT2-230ENST00000557427 BLMP54132 1417 aaPredicted RBP19.17■□□□□ 0.66
SHMT2-230ENST00000557427 GJD4Q96KN9 370 aaPredicted RBP19.16■□□□□ 0.66
SHMT2-230ENST00000557427 COL22A1Q8NFW1 1626 aaPredicted RBP19.15■□□□□ 0.66
SHMT2-230ENST00000557427 MYOM2P54296 1465 aa19.15■□□□□ 0.66
SHMT2-230ENST00000557427 GLI3P10071 1580 aa19.1■□□□□ 0.65
SHMT2-230ENST00000557427 PPARGC1BQ86YN6 1023 aaKnown RBP19.09■□□□□ 0.65
SHMT2-230ENST00000557427 BRWD3Q6RI45 1802 aa19.08■□□□□ 0.64
SHMT2-230ENST00000557427 RALGAPBQ86X10 1494 aa19.08■□□□□ 0.64
SHMT2-230ENST00000557427 MARF1Q9Y4F3 1742 aaKnown RBP19.08■□□□□ 0.64
SHMT2-230ENST00000557427 PSDA5PKW4 1024 aaPredicted RBP19.07■□□□□ 0.64
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms