RNA–Protein interactions for RNA: ENST00000557024.1

SYNE2-224, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best)

Gene SYNE2, Length 998 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-224ENST00000557024 KIF15Q9NS87 1388 aa14.79□□□□□ -0.04
SYNE2-224ENST00000557024 NKTRP30414 1462 aaKnown RBP14.78□□□□□ -0.04
SYNE2-224ENST00000557024 TRIM52Q96A61 297 aa14.78□□□□□ -0.04
SYNE2-224ENST00000557024 RRP7BPQ9NSQ0 103 aa14.78□□□□□ -0.04
SYNE2-224ENST00000557024 CFAP65Q6ZU64 1925 aaKnown RBP14.78□□□□□ -0.04
SYNE2-224ENST00000557024 TET3O43151 1660 aa14.77□□□□□ -0.04
SYNE2-224ENST00000557024 BCANQ96GW7 911 aa14.77□□□□□ -0.05
SYNE2-224ENST00000557024 MYOM3Q5VTT5 1437 aa14.76□□□□□ -0.05
SYNE2-224ENST00000557024 MEX3CQ5U5Q3 659 aaKnown RBP14.76□□□□□ -0.05
SYNE2-224ENST00000557024 ERBINQ96RT1 1412 aa14.75□□□□□ -0.05
SYNE2-224ENST00000557024 PHLPP1O60346 1717 aa14.75□□□□□ -0.05
SYNE2-224ENST00000557024 KANK1Q14678 1352 aa14.75□□□□□ -0.05
SYNE2-224ENST00000557024 LRP6O75581 1613 aa14.75□□□□□ -0.05
SYNE2-224ENST00000557024 NWD1Q149M9 1564 aa14.75□□□□□ -0.05
SYNE2-224ENST00000557024 KANK4Q5T7N3 995 aaPredicted RBP14.74□□□□□ -0.05
SYNE2-224ENST00000557024 ZNF772Q68DY9 489 aaPredicted RBP14.73□□□□□ -0.05
SYNE2-224ENST00000557024 SPATA31A6Q5VVP1 1343 aa14.72□□□□□ -0.05
SYNE2-224ENST00000557024 C1QBPQ07021 282 aaKnown RBP14.72□□□□□ -0.05
SYNE2-224ENST00000557024 COL16A1Q07092 1604 aaPredicted RBP14.72□□□□□ -0.05
SYNE2-224ENST00000557024 ABCC5O15440 1437 aa14.71□□□□□ -0.05
SYNE2-224ENST00000557024 ADGRB3O60242 1522 aa14.71□□□□□ -0.06
SYNE2-224ENST00000557024 FGD6Q6ZV73 1430 aa14.7□□□□□ -0.06
SYNE2-224ENST00000557024 C14orf37Q86TY3 774 aa14.7□□□□□ -0.06
SYNE2-224ENST00000557024 KDM5AP29375 1690 aaKnown RBP14.7□□□□□ -0.06
SYNE2-224ENST00000557024 NOS1P29475 1434 aa14.69□□□□□ -0.06
SYNE2-224ENST00000557024 RXRBP28702 533 aa14.69□□□□□ -0.06
SYNE2-224ENST00000557024 LMTK2Q8IWU2 1503 aa14.69□□□□□ -0.06
SYNE2-224ENST00000557024 PPP1R15AO75807 674 aaPredicted RBP14.68□□□□□ -0.06
SYNE2-224ENST00000557024 VPS8Q8N3P4 1428 aa14.67□□□□□ -0.06
SYNE2-224ENST00000557024 SLC52A1Q9NWF4 448 aa14.67□□□□□ -0.06
SYNE2-224ENST00000557024 PLEKHG1Q9ULL1 1385 aa14.67□□□□□ -0.06
SYNE2-224ENST00000557024 NUTM2BA6NNL0 878 aaPredicted RBP14.66□□□□□ -0.06
SYNE2-224ENST00000557024 NUTM2EB1AL46 878 aaPredicted RBP14.66□□□□□ -0.06
SYNE2-224ENST00000557024 NUTM2AQ8IVF1 878 aaPredicted RBP14.66□□□□□ -0.06
SYNE2-224ENST00000557024 CHIC2Q9UKJ5 165 aa14.66□□□□□ -0.06
SYNE2-224ENST00000557024 ZFYVE9O95405 1425 aa14.66□□□□□ -0.06
SYNE2-224ENST00000557024 DAPK1P53355 1430 aa14.66□□□□□ -0.06
SYNE2-224ENST00000557024 SRCAPQ6ZRS2 3230 aa14.65□□□□□ -0.06
SYNE2-224ENST00000557024 RIMS2Q9UQ26 1411 aa14.65□□□□□ -0.06
SYNE2-224ENST00000557024 ATF3P18847 181 aa14.64□□□□□ -0.07
SYNE2-224ENST00000557024 CADPS2Q86UW7 1296 aa14.64□□□□□ -0.07
SYNE2-224ENST00000557024 NCOA3Q9Y6Q9 1424 aa14.64□□□□□ -0.07
SYNE2-224ENST00000557024 CROCC2H7BZ55 1655 aa14.64□□□□□ -0.07
SYNE2-224ENST00000557024 AHDC1Q5TGY3 1603 aaPredicted RBP14.63□□□□□ -0.07
SYNE2-224ENST00000557024 ANKRD30AQ9BXX3 1397 aa14.63□□□□□ -0.07
SYNE2-224ENST00000557024 TBX22Q9Y458 520 aa14.63□□□□□ -0.07
SYNE2-224ENST00000557024 AFF2P51816 1311 aa14.63□□□□□ -0.07
SYNE2-224ENST00000557024 CDK12Q9NYV4 1490 aaPredicted RBP14.63□□□□□ -0.07
SYNE2-224ENST00000557024 C19orf44Q9H6X5 657 aa14.62□□□□□ -0.07
SYNE2-224ENST00000557024 HDGFP51858 240 aaKnown RBP14.61□□□□□ -0.07
SYNE2-224ENST00000557024 NUTM2DQ5VT03 806 aaPredicted RBP14.61□□□□□ -0.07
SYNE2-224ENST00000557024 BRINP3Q76B58 766 aa14.61□□□□□ -0.07
SYNE2-224ENST00000557024 PTPN23Q9H3S7 1636 aa14.61□□□□□ -0.07
SYNE2-224ENST00000557024 SHPRHQ149N8 1683 aa14.61□□□□□ -0.07
SYNE2-224ENST00000557024 CHD2O14647 1828 aaKnown RBP14.59□□□□□ -0.07
SYNE2-224ENST00000557024 CHGAP10645 457 aaKnown RBP14.59□□□□□ -0.07
SYNE2-224ENST00000557024 RGS12O14924 1447 aa14.58□□□□□ -0.07
SYNE2-224ENST00000557024 ADAMTS13Q76LX8 1427 aa14.58□□□□□ -0.07
SYNE2-224ENST00000557024 ABCF1Q8NE71 845 aaKnown RBP eCLIP14.58□□□□□ -0.08
SYNE2-224ENST00000557024 DIP2AQ14689 1571 aa14.58□□□□□ -0.08
SYNE2-224ENST00000557024 SIPA1L2Q9P2F8 1722 aaPredicted RBP14.58□□□□□ -0.08
SYNE2-224ENST00000557024 RPRD2Q5VT52 1461 aaKnown RBP14.57□□□□□ -0.08
SYNE2-224ENST00000557024 MYCNP04198 464 aaPredicted RBP14.57□□□□□ -0.08
SYNE2-224ENST00000557024 C8orf37Q96NL8 207 aa14.57□□□□□ -0.08
SYNE2-224ENST00000557024 TMEM131LA2VDJ0 1609 aa14.55□□□□□ -0.08
SYNE2-224ENST00000557024 QTRT2Q9H974 415 aaKnown RBP14.55□□□□□ -0.08
SYNE2-224ENST00000557024 AMOTL2Q9Y2J4 779 aa14.55□□□□□ -0.08
SYNE2-224ENST00000557024 PIK3R4Q99570 1358 aa14.55□□□□□ -0.08
SYNE2-224ENST00000557024 ASXL1Q8IXJ9 1541 aa14.55□□□□□ -0.08
SYNE2-224ENST00000557024 RBM6P78332 1123 aaKnown RBP14.54□□□□□ -0.08
SYNE2-224ENST00000557024 SETD5Q9C0A6 1442 aa14.54□□□□□ -0.08
SYNE2-224ENST00000557024 GCC2Q8IWJ2 1684 aa14.54□□□□□ -0.08
SYNE2-224ENST00000557024 PTPRUQ92729 1446 aa14.53□□□□□ -0.08
SYNE2-224ENST00000557024 LOC105371045A0A1W2PR82 267 aa14.53□□□□□ -0.08
SYNE2-224ENST00000557024 ANKRD50Q9ULJ7 1429 aa14.52□□□□□ -0.08
SYNE2-224ENST00000557024 DDX17Q92841 729 aaKnown RBP14.52□□□□□ -0.09
SYNE2-224ENST00000557024 LRRC59Q96AG4 307 aaKnown RBP14.52□□□□□ -0.09
SYNE2-224ENST00000557024 MYO5BQ9ULV0 1848 aa14.52□□□□□ -0.09
SYNE2-224ENST00000557024 ADGRL2O95490 1459 aa14.51□□□□□ -0.09
SYNE2-224ENST00000557024 DCCP43146 1447 aa14.51□□□□□ -0.09
SYNE2-224ENST00000557024 TRPM2O94759 1503 aa14.51□□□□□ -0.09
SYNE2-224ENST00000557024 MST1RQ04912 1400 aa14.5□□□□□ -0.09
SYNE2-224ENST00000557024 PNPLA6Q8IY17 1366 aa14.5□□□□□ -0.09
SYNE2-224ENST00000557024 ADAMTS2O95450 1211 aa14.5□□□□□ -0.09
SYNE2-224ENST00000557024 APLP2Q06481 763 aa14.49□□□□□ -0.09
SYNE2-224ENST00000557024 NGLY1Q96IV0 654 aa14.49□□□□□ -0.09
SYNE2-224ENST00000557024 ATAD2Q6PL18 1390 aa14.48□□□□□ -0.09
SYNE2-224ENST00000557024 FAM50AQ14320 339 aaKnown RBP14.47□□□□□ -0.09
SYNE2-224ENST00000557024 ZRANB1Q9UGI0 708 aa14.47□□□□□ -0.09
SYNE2-224ENST00000557024 NHSL1Q5SYE7 1610 aa14.46□□□□□ -0.09
SYNE2-224ENST00000557024 UNC13BO14795 1591 aa14.45□□□□□ -0.1
SYNE2-224ENST00000557024 USP21Q9UK80 565 aa14.44□□□□□ -0.1
SYNE2-224ENST00000557024 ADGRL3Q9HAR2 1447 aa14.43□□□□□ -0.1
SYNE2-224ENST00000557024 METP08581 1390 aa14.43□□□□□ -0.1
SYNE2-224ENST00000557024 XRN1Q8IZH2 1706 aaKnown RBP14.43□□□□□ -0.1
SYNE2-224ENST00000557024 SETBP1Q9Y6X0 1596 aa14.43□□□□□ -0.1
SYNE2-224ENST00000557024 TRPC5Q9UL62 973 aaPredicted RBP14.41□□□□□ -0.1
SYNE2-224ENST00000557024 E9PCH4 1651 aa14.41□□□□□ -0.1
SYNE2-224ENST00000557024 NRXN3Q9Y4C0 1643 aa14.4□□□□□ -0.1
SYNE2-224ENST00000557024 C1orf167Q5SNV9 1468 aa14.38□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 84.7 ms