RNA–Protein interactions for RNA: ENST00000557005.1

SYNE2-223, Transcript of spectrin repeat containing nuclear envelope protein 2, human

TSL 2

Gene SYNE2, Length 5,804 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SYNE2-223	ENST00000557005	HMGXB3	Q12766	1538 aa		6.19	□□□□□ -1.42
SYNE2-223	ENST00000557005	DZIP1L	Q8IYY4	767 aa	Known RBP	6.19	□□□□□ -1.42
SYNE2-223	ENST00000557005	SYAP1	Q96A49	352 aa	Predicted RBP	6.19	□□□□□ -1.42
SYNE2-223	ENST00000557005	PEG3	Q9GZU2	1588 aa		6.19	□□□□□ -1.42
SYNE2-223	ENST00000557005	NPM1	P06748	294 aa	Known RBP eCLIP	6.19	□□□□□ -1.42
SYNE2-223	ENST00000557005	KCNJ4	P48050	445 aa		6.19	□□□□□ -1.42
SYNE2-223	ENST00000557005	MRE11	P49959	708 aa		6.19	□□□□□ -1.42
SYNE2-223	ENST00000557005	PDZRN4	Q6ZMN7	1036 aa	Predicted RBP	6.19	□□□□□ -1.42
SYNE2-223	ENST00000557005	C1orf115	Q9H7X2	142 aa		6.19	□□□□□ -1.42
SYNE2-223	ENST00000557005	RUNDC1	Q96C34	613 aa		6.18	□□□□□ -1.42
SYNE2-223	ENST00000557005	EPRS	P07814	1512 aa	Known RBP	6.18	□□□□□ -1.42
SYNE2-223	ENST00000557005	ARHGAP5	Q13017	1502 aa		6.18	□□□□□ -1.42
SYNE2-223	ENST00000557005	GOLGA6L4	A6NEF3	574 aa		6.18	□□□□□ -1.42
SYNE2-223	ENST00000557005	ELL2	O00472	640 aa	Predicted RBP	6.18	□□□□□ -1.42
SYNE2-223	ENST00000557005	NASP	P49321	788 aa	Predicted RBP	6.18	□□□□□ -1.42
SYNE2-223	ENST00000557005	HDGFL2	Q7Z4V5	671 aa	Predicted RBP	6.18	□□□□□ -1.42
SYNE2-223	ENST00000557005	GRPEL1	Q9HAV7	217 aa		6.18	□□□□□ -1.42
SYNE2-223	ENST00000557005	TOPBP1	Q92547	1522 aa		6.18	□□□□□ -1.42
SYNE2-223	ENST00000557005	NCAPD3	P42695	1498 aa		6.18	□□□□□ -1.42
SYNE2-223	ENST00000557005	ST18	O60284	1047 aa		6.18	□□□□□ -1.42
SYNE2-223	ENST00000557005	PRG4	Q92954	1404 aa	Predicted RBP	6.18	□□□□□ -1.42
SYNE2-223	ENST00000557005	SLC4A10	Q6U841	1118 aa		6.18	□□□□□ -1.42
SYNE2-223	ENST00000557005	UBE2Q2	Q8WVN8	375 aa		6.18	□□□□□ -1.42
SYNE2-223	ENST00000557005	TPM2	P07951	284 aa		6.17	□□□□□ -1.42
SYNE2-223	ENST00000557005	ANKRD30B	Q9BXX2	1392 aa		6.17	□□□□□ -1.42
SYNE2-223	ENST00000557005	POLA1	P09884	1462 aa	Predicted RBP	6.17	□□□□□ -1.42
SYNE2-223	ENST00000557005	UGGT2	Q9NYU1	1516 aa		6.17	□□□□□ -1.42
SYNE2-223	ENST00000557005	ZFP91-CNTF	A0A0A6YYC7	529 aa	Predicted RBP	6.17	□□□□□ -1.42
SYNE2-223	ENST00000557005	LNPK	Q9C0E8	428 aa		6.17	□□□□□ -1.42
SYNE2-223	ENST00000557005	C9orf84	Q5VXU9	1444 aa		6.17	□□□□□ -1.42
SYNE2-223	ENST00000557005	CFAP44	Q96MT7	982 aa		6.17	□□□□□ -1.42
SYNE2-223	ENST00000557005	ABCC5	O15440	1437 aa		6.17	□□□□□ -1.42
SYNE2-223	ENST00000557005	THOC2	Q8NI27	1593 aa	Known RBP	6.17	□□□□□ -1.42
SYNE2-223	ENST00000557005	RILPL2	Q969X0	211 aa		6.17	□□□□□ -1.42
SYNE2-223	ENST00000557005	NOB1	Q9ULX3	412 aa	Known RBP	6.17	□□□□□ -1.42
SYNE2-223	ENST00000557005	KIF14	Q15058	1648 aa		6.17	□□□□□ -1.42
SYNE2-223	ENST00000557005	HSP90B1	P14625	803 aa	Known RBP	6.16	□□□□□ -1.42
SYNE2-223	ENST00000557005	DDX19B	Q9UMR2	479 aa		6.16	□□□□□ -1.42
SYNE2-223	ENST00000557005		A0A0U1RQG5	324 aa	Predicted RBP	6.16	□□□□□ -1.42
SYNE2-223	ENST00000557005	CAVIN1	Q6NZI2	390 aa	Known RBP	6.16	□□□□□ -1.42
SYNE2-223	ENST00000557005	ZNF771	Q7L3S4	317 aa	Predicted RBP	6.16	□□□□□ -1.42
SYNE2-223	ENST00000557005	CCDC173	Q0VFZ6	552 aa		6.16	□□□□□ -1.42
SYNE2-223	ENST00000557005	GGT6	Q6P531	493 aa		6.16	□□□□□ -1.42
SYNE2-223	ENST00000557005	DISP3	Q9P2K9	1392 aa		6.16	□□□□□ -1.42
SYNE2-223	ENST00000557005	PHF14	O94880	888 aa		6.16	□□□□□ -1.42
SYNE2-223	ENST00000557005	PLEKHH2	Q8IVE3	1493 aa		6.16	□□□□□ -1.42
SYNE2-223	ENST00000557005	KIF16B	Q96L93	1317 aa		6.15	□□□□□ -1.42
SYNE2-223	ENST00000557005	GRIN2B	Q13224	1484 aa		6.15	□□□□□ -1.42
SYNE2-223	ENST00000557005	KIF3B	O15066	747 aa		6.15	□□□□□ -1.42
SYNE2-223	ENST00000557005	TSR2	Q969E8	191 aa	Known RBP	6.15	□□□□□ -1.42
SYNE2-223	ENST00000557005	CCDC39	Q9UFE4	941 aa		6.15	□□□□□ -1.42
SYNE2-223	ENST00000557005	RPRD2	Q5VT52	1461 aa	Known RBP	6.15	□□□□□ -1.42
SYNE2-223	ENST00000557005	RIPK4	P57078	832 aa		6.15	□□□□□ -1.42
SYNE2-223	ENST00000557005	IQGAP2	Q13576	1575 aa		6.15	□□□□□ -1.42
SYNE2-223	ENST00000557005	UQCRHL	A0A096LP55	91 aa		6.15	□□□□□ -1.43
SYNE2-223	ENST00000557005	IGHD	P01880	384 aa		6.15	□□□□□ -1.43
SYNE2-223	ENST00000557005	UQCRH	P07919	91 aa		6.15	□□□□□ -1.43
SYNE2-223	ENST00000557005	FGD1	P98174	961 aa		6.15	□□□□□ -1.43
SYNE2-223	ENST00000557005	GCC2	Q8IWJ2	1684 aa		6.15	□□□□□ -1.43
SYNE2-223	ENST00000557005	SLFN5	Q08AF3	891 aa		6.15	□□□□□ -1.43
SYNE2-223	ENST00000557005	RTF1	Q92541	710 aa	Known RBP	6.15	□□□□□ -1.43
SYNE2-223	ENST00000557005	ZNF592	Q92610	1267 aa		6.15	□□□□□ -1.43
SYNE2-223	ENST00000557005	NKTR	P30414	1462 aa	Known RBP	6.14	□□□□□ -1.43
SYNE2-223	ENST00000557005	KIAA1211	Q6ZU35	1233 aa		6.14	□□□□□ -1.43
SYNE2-223	ENST00000557005	CSPP1	Q1MSJ5	1256 aa		6.14	□□□□□ -1.43
SYNE2-223	ENST00000557005	C8orf34	Q49A92	452 aa		6.14	□□□□□ -1.43
SYNE2-223	ENST00000557005	RNF214	Q8ND24	703 aa		6.14	□□□□□ -1.43
SYNE2-223	ENST00000557005	PRDM10	Q9NQV6	1147 aa		6.14	□□□□□ -1.43
SYNE2-223	ENST00000557005	ROCK1	Q13464	1354 aa		6.14	□□□□□ -1.43
SYNE2-223	ENST00000557005	PRPF40A	O75400	957 aa	Known RBP	6.14	□□□□□ -1.43
SYNE2-223	ENST00000557005	KDM6B	O15054	1643 aa		6.13	□□□□□ -1.43
SYNE2-223	ENST00000557005	SPAG9	O60271	1321 aa	Known RBP	6.13	□□□□□ -1.43
SYNE2-223	ENST00000557005	CHMP3	Q9Y3E7	222 aa		6.13	□□□□□ -1.43
SYNE2-223	ENST00000557005	CDC45	O75419	566 aa		6.13	□□□□□ -1.43
SYNE2-223	ENST00000557005	MPND	Q8N594	471 aa		6.13	□□□□□ -1.43
SYNE2-223	ENST00000557005	CABP2	Q9NPB3	220 aa		6.13	□□□□□ -1.43
SYNE2-223	ENST00000557005	ABCA10	Q8WWZ4	1543 aa		6.13	□□□□□ -1.43
SYNE2-223	ENST00000557005	MCM4	P33991	863 aa		6.13	□□□□□ -1.43
SYNE2-223	ENST00000557005	EXOSC9	Q06265	439 aa	Known RBP	6.12	□□□□□ -1.43
SYNE2-223	ENST00000557005	FBXW7	Q969H0	707 aa		6.12	□□□□□ -1.43
SYNE2-223	ENST00000557005	TSPY26P	Q9H489	355 aa		6.12	□□□□□ -1.43
SYNE2-223	ENST00000557005	LAMC3	Q9Y6N6	1575 aa		6.12	□□□□□ -1.43
SYNE2-223	ENST00000557005	NINL	Q9Y2I6	1382 aa		6.12	□□□□□ -1.43
SYNE2-223	ENST00000557005	NECTIN2	Q92692	538 aa		6.12	□□□□□ -1.43
SYNE2-223	ENST00000557005	HMOX1	P09601	288 aa		6.12	□□□□□ -1.43
SYNE2-223	ENST00000557005	FOSB	P53539	338 aa		6.12	□□□□□ -1.43
SYNE2-223	ENST00000557005	TBC1D2	Q9BYX2	928 aa		6.12	□□□□□ -1.43
SYNE2-223	ENST00000557005	ANO2	Q9NQ90	1003 aa		6.12	□□□□□ -1.43
SYNE2-223	ENST00000557005	CCDC27	Q2M243	656 aa		6.12	□□□□□ -1.43
SYNE2-223	ENST00000557005	INTS3	Q68E01	1043 aa	Known RBP	6.12	□□□□□ -1.43
SYNE2-223	ENST00000557005	SNAPC4	Q5SXM2	1469 aa		6.12	□□□□□ -1.43
SYNE2-223	ENST00000557005	RALGAPB	Q86X10	1494 aa		6.12	□□□□□ -1.43
SYNE2-223	ENST00000557005		K7ELQ4	463 aa	Predicted RBP	6.11	□□□□□ -1.43
SYNE2-223	ENST00000557005	MVP	Q14764	893 aa	Known RBP	6.11	□□□□□ -1.43
SYNE2-223	ENST00000557005	TCP11L2	Q8N4U5	519 aa		6.11	□□□□□ -1.43
SYNE2-223	ENST00000557005	ITSN2	Q9NZM3	1697 aa		6.11	□□□□□ -1.43
SYNE2-223	ENST00000557005	DHX29	Q7Z478	1369 aa	Known RBP	6.11	□□□□□ -1.43
SYNE2-223	ENST00000557005	RRP9	O43818	475 aa	Known RBP	6.11	□□□□□ -1.43
SYNE2-223	ENST00000557005	TERF2IP	Q9NYB0	399 aa		6.11	□□□□□ -1.43
SYNE2-223	ENST00000557005	ARHGEF11	O15085	1522 aa		6.11	□□□□□ -1.43

Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms