RNA–Protein interactions for RNA: ENST00000556445.1

SRP54-211, Transcript of signal recognition particle 54, humanhuman

TSL 2

Gene SRP54, Length 530 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54-211ENST00000556445 RNF40O75150 1001 aa10.01□□□□□ -0.81
SRP54-211ENST00000556445 ZC3H15Q8WU90 426 aaKnown RBP10.01□□□□□ -0.81
SRP54-211ENST00000556445 PLA2G2EQ9NZK7 142 aa10.01□□□□□ -0.81
SRP54-211ENST00000556445 IRF6O14896 467 aa10□□□□□ -0.81
SRP54-211ENST00000556445 NLRP7Q8WX94 980 aa9.99□□□□□ -0.81
SRP54-211ENST00000556445 MINK1Q8N4C8 1332 aaPredicted RBP9.99□□□□□ -0.81
SRP54-211ENST00000556445 ZMYND10O75800 440 aa9.98□□□□□ -0.81
SRP54-211ENST00000556445 BCANQ96GW7 911 aa9.98□□□□□ -0.81
SRP54-211ENST00000556445 APLP1P51693 650 aa9.97□□□□□ -0.81
SRP54-211ENST00000556445 BARGINQ6ZT62 677 aa9.97□□□□□ -0.81
SRP54-211ENST00000556445 ITGBL1O95965 494 aaPredicted RBP9.96□□□□□ -0.82
SRP54-211ENST00000556445 SLC4A3P48751 1232 aa9.96□□□□□ -0.82
SRP54-211ENST00000556445 NECTIN2Q92692 538 aa9.96□□□□□ -0.82
SRP54-211ENST00000556445 CCDC102AQ96A19 550 aa9.96□□□□□ -0.82
SRP54-211ENST00000556445 SLC10A3P09131 477 aa9.95□□□□□ -0.82
SRP54-211ENST00000556445 DAXXQ9UER7 740 aaPredicted RBP9.95□□□□□ -0.82
SRP54-211ENST00000556445 IFFO2Q5TF58 517 aa9.94□□□□□ -0.82
SRP54-211ENST00000556445 TJAP1Q5JTD0 557 aa9.91□□□□□ -0.82
SRP54-211ENST00000556445 CFHP08603 1231 aa9.9□□□□□ -0.82
SRP54-211ENST00000556445 KRI1Q8N9T8 703 aaKnown RBP9.9□□□□□ -0.82
SRP54-211ENST00000556445 MTRQ99707 1265 aa9.89□□□□□ -0.83
SRP54-211ENST00000556445 MDM2Q00987 491 aaPredicted RBP9.88□□□□□ -0.83
SRP54-211ENST00000556445 KCNC4Q03721 635 aa9.88□□□□□ -0.83
SRP54-211ENST00000556445 PRR14Q9BWN1 585 aa9.88□□□□□ -0.83
SRP54-211ENST00000556445 DDX11L8A8MPP1 907 aa9.87□□□□□ -0.83
SRP54-211ENST00000556445 ACTN4O43707 911 aaKnown RBP9.87□□□□□ -0.83
SRP54-211ENST00000556445 KMT5BQ4FZB7 885 aa9.86□□□□□ -0.83
SRP54-211ENST00000556445 TMUB1Q9BVT8 246 aa9.86□□□□□ -0.83
SRP54-211ENST00000556445 IL21Q9HBE4 155 aa9.86□□□□□ -0.83
SRP54-211ENST00000556445 SULF1Q8IWU6 871 aa9.85□□□□□ -0.83
SRP54-211ENST00000556445 RDH13Q8NBN7 331 aa9.85□□□□□ -0.83
SRP54-211ENST00000556445 ZNF516Q92618 1163 aa9.85□□□□□ -0.83
SRP54-211ENST00000556445 A0A0G2JS52 829 aa9.84□□□□□ -0.83
SRP54-211ENST00000556445 COPS2P61201 443 aa9.84□□□□□ -0.83
SRP54-211ENST00000556445 RSPH4AQ5TD94 716 aa9.84□□□□□ -0.83
SRP54-211ENST00000556445 PCDHB3Q9Y5E6 796 aa9.84□□□□□ -0.83
SRP54-211ENST00000556445 BLOC1S3Q6QNY0 202 aa9.83□□□□□ -0.84
SRP54-211ENST00000556445 REPIN1Q9BWE0 567 aaKnown RBP9.83□□□□□ -0.84
SRP54-211ENST00000556445 CD46P15529 392 aa9.82□□□□□ -0.84
SRP54-211ENST00000556445 CLCN1P35523 988 aa9.82□□□□□ -0.84
SRP54-211ENST00000556445 GCGRP47871 477 aa9.82□□□□□ -0.84
SRP54-211ENST00000556445 AMHR2Q16671 573 aa9.82□□□□□ -0.84
SRP54-211ENST00000556445 GPCPD1Q9NPB8 672 aa9.82□□□□□ -0.84
SRP54-211ENST00000556445 AK7Q96M32 723 aa9.81□□□□□ -0.84
SRP54-211ENST00000556445 TRIM66O15016 1216 aa9.8□□□□□ -0.84
SRP54-211ENST00000556445 FAM217BQ9NTX9 383 aaPredicted RBP9.8□□□□□ -0.84
SRP54-211ENST00000556445 ZPR1O75312 459 aa9.79□□□□□ -0.84
SRP54-211ENST00000556445 SLC24A3Q9HC58 644 aa9.79□□□□□ -0.84
SRP54-211ENST00000556445 FUT2Q10981 343 aa9.78□□□□□ -0.84
SRP54-211ENST00000556445 NKX2-3Q8TAU0 364 aa9.78□□□□□ -0.84
SRP54-211ENST00000556445 PUS10Q3MIT2 529 aaKnown RBP9.77□□□□□ -0.85
SRP54-211ENST00000556445 TLL1O43897 1013 aa9.75□□□□□ -0.85
SRP54-211ENST00000556445 TTLL12Q14166 644 aaPredicted RBP9.75□□□□□ -0.85
SRP54-211ENST00000556445 MORN1Q5T089 497 aa9.75□□□□□ -0.85
SRP54-211ENST00000556445 PARP9Q8IXQ6 854 aa9.75□□□□□ -0.85
SRP54-211ENST00000556445 NR1I2O75469 434 aa9.74□□□□□ -0.85
SRP54-211ENST00000556445 ATP6V1AP38606 617 aa9.74□□□□□ -0.85
SRP54-211ENST00000556445 GIGYF2Q6Y7W6 1299 aaKnown RBP9.74□□□□□ -0.85
SRP54-211ENST00000556445 SSTR3P32745 418 aaPredicted RBP9.73□□□□□ -0.85
SRP54-211ENST00000556445 SCUBE3Q8IX30 993 aa9.73□□□□□ -0.85
SRP54-211ENST00000556445 KDM4AO75164 1064 aa9.72□□□□□ -0.85
SRP54-211ENST00000556445 PDE4DQ08499 809 aa9.72□□□□□ -0.85
SRP54-211ENST00000556445 PPP1R18Q6NYC8 613 aa9.71□□□□□ -0.86
SRP54-211ENST00000556445 SLC27A5Q9Y2P5 690 aa9.71□□□□□ -0.86
SRP54-211ENST00000556445 RGS20O76081 388 aa9.7□□□□□ -0.86
SRP54-211ENST00000556445 THAP11Q96EK4 314 aa9.7□□□□□ -0.86
SRP54-211ENST00000556445 ADH1BP00325 375 aa9.69□□□□□ -0.86
SRP54-211ENST00000556445 USP46P62068 366 aa9.69□□□□□ -0.86
SRP54-211ENST00000556445 HOXA2O43364 376 aa9.68□□□□□ -0.86
SRP54-211ENST00000556445 MS4A1P11836 297 aa9.68□□□□□ -0.86
SRP54-211ENST00000556445 HLA-CQ95604 372 aa9.68□□□□□ -0.86
SRP54-211ENST00000556445 EIF4ENIF1Q9NRA8 985 aaKnown RBP9.68□□□□□ -0.86
SRP54-211ENST00000556445 GRIPAP1Q4V328 841 aa9.67□□□□□ -0.86
SRP54-211ENST00000556445 BRICD5Q6PL45 260 aa9.66□□□□□ -0.86
SRP54-211ENST00000556445 SALL2Q9Y467 1007 aaPredicted RBP9.66□□□□□ -0.86
SRP54-211ENST00000556445 S1PR4O95977 384 aa9.65□□□□□ -0.86
SRP54-211ENST00000556445 RNF19BQ6ZMZ0 732 aa9.65□□□□□ -0.86
SRP54-211ENST00000556445 NUTM1Q86Y26 1132 aa9.65□□□□□ -0.86
SRP54-211ENST00000556445 SPIRE2Q8WWL2 714 aa9.65□□□□□ -0.86
SRP54-211ENST00000556445 SPSB2Q99619 263 aa9.65□□□□□ -0.86
SRP54-211ENST00000556445 BEGAINQ9BUH8 593 aa9.65□□□□□ -0.86
SRP54-211ENST00000556445 FMNL1O95466 1100 aaPredicted RBP9.64□□□□□ -0.87
SRP54-211ENST00000556445 GGCXP38435 758 aa9.64□□□□□ -0.87
SRP54-211ENST00000556445 RNF223E7ERA6 249 aa9.63□□□□□ -0.87
SRP54-211ENST00000556445 GUCA2AQ02747 115 aa9.63□□□□□ -0.87
SRP54-211ENST00000556445 FAM160A2Q8N612 972 aaPredicted RBP9.63□□□□□ -0.87
SRP54-211ENST00000556445 SLC6A16Q9GZN6 736 aa9.63□□□□□ -0.87
SRP54-211ENST00000556445 Q3C1V9 767 aa9.61□□□□□ -0.87
SRP54-211ENST00000556445 PPEF1O14829 653 aaPredicted RBP9.6□□□□□ -0.87
SRP54-211ENST00000556445 TBC1D2Q9BYX2 928 aa9.6□□□□□ -0.87
SRP54-211ENST00000556445 PCDHGC3Q9UN70 934 aa9.6□□□□□ -0.87
SRP54-211ENST00000556445 MOXD2PA6NHM9 499 aa9.59□□□□□ -0.87
SRP54-211ENST00000556445 MSS51Q4VC12 460 aa9.59□□□□□ -0.87
SRP54-211ENST00000556445 ANKLE1Q8NAG6 615 aa9.59□□□□□ -0.87
SRP54-211ENST00000556445 EMID1Q96A84 441 aaPredicted RBP9.59□□□□□ -0.87
SRP54-211ENST00000556445 PRDM9Q9NQV7 894 aa9.59□□□□□ -0.87
SRP54-211ENST00000556445 FDX1P10109 184 aa9.58□□□□□ -0.88
SRP54-211ENST00000556445 NDUFV2P19404 249 aa9.58□□□□□ -0.88
SRP54-211ENST00000556445 PRKD2Q9BZL6 878 aa9.58□□□□□ -0.88
SRP54-211ENST00000556445 GPBP1L1Q9HC44 474 aaPredicted RBP9.58□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 139.4 ms