RNA–Protein interactions for RNA: ENST00000556422.5

TMEM260-210, Transcript of transmembrane protein 260, humanhuman

TSL 1 (best)

Gene TMEM260, Length 3,864 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM260-210ENST00000556422 CCDC184Q52MB2 194 aa6.91□□□□□ -1.3
TMEM260-210ENST00000556422 PRKRIP1Q9H875 184 aaPredicted RBP6.91□□□□□ -1.3
TMEM260-210ENST00000556422 SCAPERQ9BY12 1400 aa6.9□□□□□ -1.3
TMEM260-210ENST00000556422 CCDC9Q9Y3X0 531 aaKnown RBP6.9□□□□□ -1.3
TMEM260-210ENST00000556422 MADDQ8WXG6 1647 aa6.9□□□□□ -1.3
TMEM260-210ENST00000556422 GPRASP1Q5JY77 1395 aa6.9□□□□□ -1.31
TMEM260-210ENST00000556422 KDM2AQ9Y2K7 1162 aa6.9□□□□□ -1.31
TMEM260-210ENST00000556422 SUPT16HQ9Y5B9 1047 aaKnown RBP6.89□□□□□ -1.31
TMEM260-210ENST00000556422 PTPRTO14522 1441 aa6.89□□□□□ -1.31
TMEM260-210ENST00000556422 CARD11Q9BXL7 1154 aa6.89□□□□□ -1.31
TMEM260-210ENST00000556422 FRMPD1Q5SYB0 1578 aa6.89□□□□□ -1.31
TMEM260-210ENST00000556422 CFAP74Q9C0B2 1584 aa6.89□□□□□ -1.31
TMEM260-210ENST00000556422 PPRC1Q5VV67 1664 aaKnown RBP6.89□□□□□ -1.31
TMEM260-210ENST00000556422 ROCK2O75116 1388 aaKnown RBP6.88□□□□□ -1.31
TMEM260-210ENST00000556422 IQGAP1P46940 1657 aa6.88□□□□□ -1.31
TMEM260-210ENST00000556422 ARID4BQ4LE39 1312 aaPredicted RBP6.88□□□□□ -1.31
TMEM260-210ENST00000556422 ZNF518AQ6AHZ1 1483 aa6.88□□□□□ -1.31
TMEM260-210ENST00000556422 ST20-MTHFSA0A0A6YYL1 179 aa6.88□□□□□ -1.31
TMEM260-210ENST00000556422 IFT172Q9UG01 1749 aa6.88□□□□□ -1.31
TMEM260-210ENST00000556422 EFCAB6Q5THR3 1501 aa6.87□□□□□ -1.31
TMEM260-210ENST00000556422 NBPF1Q3BBV0 1214 aa6.87□□□□□ -1.31
TMEM260-210ENST00000556422 RGL3Q3MIN7 710 aa6.87□□□□□ -1.31
TMEM260-210ENST00000556422 BCCIPQ9P287 314 aaKnown RBP eCLIP6.87□□□□□ -1.31
TMEM260-210ENST00000556422 ABCA6Q8N139 1617 aa6.87□□□□□ -1.31
TMEM260-210ENST00000556422 RSPH6AQ9H0K4 717 aa6.87□□□□□ -1.31
TMEM260-210ENST00000556422 MROH2AA6NES4 1674 aa6.87□□□□□ -1.31
TMEM260-210ENST00000556422 HECW2Q9P2P5 1572 aa6.87□□□□□ -1.31
TMEM260-210ENST00000556422 POGZQ7Z3K3 1410 aa6.87□□□□□ -1.31
TMEM260-210ENST00000556422 NEURL4Q96JN8 1562 aa6.87□□□□□ -1.31
TMEM260-210ENST00000556422 UGGT1Q9NYU2 1555 aa6.87□□□□□ -1.31
TMEM260-210ENST00000556422 CD109Q6YHK3 1445 aa6.86□□□□□ -1.31
TMEM260-210ENST00000556422 MAP3K4Q9Y6R4 1608 aa6.86□□□□□ -1.31
TMEM260-210ENST00000556422 RICTORQ6R327 1708 aa6.86□□□□□ -1.31
TMEM260-210ENST00000556422 COL17A1Q9UMD9 1497 aaPredicted RBP6.86□□□□□ -1.31
TMEM260-210ENST00000556422 KIF1BO60333 1816 aa6.86□□□□□ -1.31
TMEM260-210ENST00000556422 HMGB1P09429 215 aaKnown RBP6.86□□□□□ -1.31
TMEM260-210ENST00000556422 LMTK2Q8IWU2 1503 aa6.86□□□□□ -1.31
TMEM260-210ENST00000556422 MLH3Q9UHC1 1453 aa6.85□□□□□ -1.31
TMEM260-210ENST00000556422 CFAP65Q6ZU64 1925 aaKnown RBP6.85□□□□□ -1.31
TMEM260-210ENST00000556422 KIAA1210Q9ULL0 1709 aa6.85□□□□□ -1.31
TMEM260-210ENST00000556422 IGSF3O75054 1194 aa6.85□□□□□ -1.31
TMEM260-210ENST00000556422 TESK2Q96S53 571 aa6.84□□□□□ -1.31
TMEM260-210ENST00000556422 NAP1L2Q9ULW6 460 aaPredicted RBP6.84□□□□□ -1.31
TMEM260-210ENST00000556422 KIF3BO15066 747 aa6.84□□□□□ -1.31
TMEM260-210ENST00000556422 SIGLEC1Q9BZZ2 1709 aa6.84□□□□□ -1.31
TMEM260-210ENST00000556422 DISP3Q9P2K9 1392 aa6.83□□□□□ -1.32
TMEM260-210ENST00000556422 HNRNPUQ00839 825 aaKnown RBP eCLIP6.83□□□□□ -1.32
TMEM260-210ENST00000556422 RTL5Q5HYW3 569 aaPredicted RBP6.83□□□□□ -1.32
TMEM260-210ENST00000556422 DIP2CQ9Y2E4 1556 aa6.83□□□□□ -1.32
TMEM260-210ENST00000556422 MRS2Q9HD23 443 aa6.83□□□□□ -1.32
TMEM260-210ENST00000556422 NEO1Q92859 1461 aa6.83□□□□□ -1.32
TMEM260-210ENST00000556422 RIMBP3CA6NJZ7 1639 aa6.83□□□□□ -1.32
TMEM260-210ENST00000556422 RIMBP3BA6NNM3 1639 aa6.83□□□□□ -1.32
TMEM260-210ENST00000556422 RIMBP3Q9UFD9 1639 aa6.83□□□□□ -1.32
TMEM260-210ENST00000556422 MYOM1P52179 1685 aa6.82□□□□□ -1.32
TMEM260-210ENST00000556422 NPM1P06748 294 aaKnown RBP eCLIP6.82□□□□□ -1.32
TMEM260-210ENST00000556422 KANK1Q14678 1352 aa6.82□□□□□ -1.32
TMEM260-210ENST00000556422 ADGRB3O60242 1522 aa6.82□□□□□ -1.32
TMEM260-210ENST00000556422 PPLO60437 1756 aa6.82□□□□□ -1.32
TMEM260-210ENST00000556422 CAMSAP1Q5T5Y3 1602 aa6.82□□□□□ -1.32
TMEM260-210ENST00000556422 MYOM2P54296 1465 aa6.81□□□□□ -1.32
TMEM260-210ENST00000556422 NCLP19338 710 aaKnown RBP6.81□□□□□ -1.32
TMEM260-210ENST00000556422 PRDM10Q9NQV6 1147 aa6.81□□□□□ -1.32
TMEM260-210ENST00000556422 NPATQ14207 1427 aa6.81□□□□□ -1.32
TMEM260-210ENST00000556422 ABCC3O15438 1527 aa6.81□□□□□ -1.32
TMEM260-210ENST00000556422 GLI2P10070 1586 aa6.81□□□□□ -1.32
TMEM260-210ENST00000556422 FAM9BQ8IZU0 186 aa6.81□□□□□ -1.32
TMEM260-210ENST00000556422 NRXN1Q9ULB1 1477 aa6.81□□□□□ -1.32
TMEM260-210ENST00000556422 PER1O15534 1290 aaPredicted RBP6.8□□□□□ -1.32
TMEM260-210ENST00000556422 PIK3C2BO00750 1634 aa6.8□□□□□ -1.32
TMEM260-210ENST00000556422 ZNF526Q8TF50 670 aaPredicted RBP6.8□□□□□ -1.32
TMEM260-210ENST00000556422 CHMP4BQ9H444 224 aaKnown RBP6.8□□□□□ -1.32
TMEM260-210ENST00000556422 DIP2BQ9P265 1576 aa6.8□□□□□ -1.32
TMEM260-210ENST00000556422 ZBED9Q6R2W3 1325 aa6.79□□□□□ -1.32
TMEM260-210ENST00000556422 DHX30Q7L2E3 1194 aaKnown RBP eCLIP6.79□□□□□ -1.32
TMEM260-210ENST00000556422 MYO3AQ8NEV4 1616 aa6.79□□□□□ -1.32
TMEM260-210ENST00000556422 SCAF11Q99590 1463 aaKnown RBP6.79□□□□□ -1.32
TMEM260-210ENST00000556422 PARD3Q8TEW0 1356 aa6.79□□□□□ -1.32
TMEM260-210ENST00000556422 FKBP8Q14318 412 aa6.79□□□□□ -1.32
TMEM260-210ENST00000556422 ARID3AQ99856 593 aa6.79□□□□□ -1.32
TMEM260-210ENST00000556422 SYNMO15061 1565 aa6.79□□□□□ -1.32
TMEM260-210ENST00000556422 RAPGEF3O95398 923 aa6.79□□□□□ -1.32
TMEM260-210ENST00000556422 ZC3H13Q5T200 1668 aaKnown RBP6.79□□□□□ -1.32
TMEM260-210ENST00000556422 CNGB1Q14028 1251 aaPredicted RBP6.78□□□□□ -1.32
TMEM260-210ENST00000556422 LRPPRCP42704 1394 aaKnown RBP6.78□□□□□ -1.32
TMEM260-210ENST00000556422 KTN1Q86UP2 1357 aaKnown RBP6.78□□□□□ -1.32
TMEM260-210ENST00000556422 MYO5BQ9ULV0 1848 aa6.78□□□□□ -1.32
TMEM260-210ENST00000556422 PNISRQ8TF01 805 aaKnown RBP6.78□□□□□ -1.32
TMEM260-210ENST00000556422 TSPOAP1O95153 1857 aa6.78□□□□□ -1.32
TMEM260-210ENST00000556422 YEATS2Q9ULM3 1422 aa6.78□□□□□ -1.32
TMEM260-210ENST00000556422 PPP4R3CPQ6ZMV5 832 aa6.77□□□□□ -1.32
TMEM260-210ENST00000556422 STAC3Q96MF2 364 aa6.77□□□□□ -1.32
TMEM260-210ENST00000556422 ZMYM4Q5VZL5 1548 aa6.77□□□□□ -1.33
TMEM260-210ENST00000556422 ADGRF5Q8IZF2 1346 aa6.77□□□□□ -1.33
TMEM260-210ENST00000556422 CNPY4Q8N129 248 aa6.77□□□□□ -1.33
TMEM260-210ENST00000556422 BBXQ8WY36 941 aaPredicted RBP6.77□□□□□ -1.33
TMEM260-210ENST00000556422 KDM5AP29375 1690 aaKnown RBP6.77□□□□□ -1.33
TMEM260-210ENST00000556422 NOS1P29475 1434 aa6.77□□□□□ -1.33
TMEM260-210ENST00000556422 ZNF592Q92610 1267 aa6.77□□□□□ -1.33
TMEM260-210ENST00000556422 SETBP1Q9Y6X0 1596 aa6.77□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 61.2 ms