RNA–Protein interactions for RNA: ENST00000556353.1

PRPF39-209, Transcript of pre-mRNA processing factor 39, humanhuman

TSL 2

Gene PRPF39, Length 687 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39-209ENST00000556353 DHX30Q7L2E3 1194 aaKnown RBP eCLIP12.98□□□□□ -0.33
PRPF39-209ENST00000556353 KCNC4Q03721 635 aa12.97□□□□□ -0.33
PRPF39-209ENST00000556353 APLP1P51693 650 aa12.95□□□□□ -0.34
PRPF39-209ENST00000556353 LMOD2Q6P5Q4 547 aa12.95□□□□□ -0.34
PRPF39-209ENST00000556353 PRR14Q9BWN1 585 aa12.94□□□□□ -0.34
PRPF39-209ENST00000556353 MAP2K5Q13163 448 aa12.92□□□□□ -0.34
PRPF39-209ENST00000556353 A0A0G2JS52 829 aa12.9□□□□□ -0.34
PRPF39-209ENST00000556353 TJAP1Q5JTD0 557 aa12.9□□□□□ -0.34
PRPF39-209ENST00000556353 MTRQ99707 1265 aa12.9□□□□□ -0.34
PRPF39-209ENST00000556353 IL21Q9HBE4 155 aa12.89□□□□□ -0.35
PRPF39-209ENST00000556353 SLC24A1O60721 1099 aa12.88□□□□□ -0.35
PRPF39-209ENST00000556353 KMT5BQ4FZB7 885 aa12.88□□□□□ -0.35
PRPF39-209ENST00000556353 RSPH4AQ5TD94 716 aa12.88□□□□□ -0.35
PRPF39-209ENST00000556353 DAXXQ9UER7 740 aaPredicted RBP12.88□□□□□ -0.35
PRPF39-209ENST00000556353 NLRP7Q8WX94 980 aa12.87□□□□□ -0.35
PRPF39-209ENST00000556353 PHOX2BQ99453 314 aa12.87□□□□□ -0.35
PRPF39-209ENST00000556353 MINK1Q8N4C8 1332 aaPredicted RBP12.87□□□□□ -0.35
PRPF39-209ENST00000556353 IRF6O14896 467 aa12.86□□□□□ -0.35
PRPF39-209ENST00000556353 CFHP08603 1231 aa12.86□□□□□ -0.35
PRPF39-209ENST00000556353 SLC10A3P09131 477 aa12.86□□□□□ -0.35
PRPF39-209ENST00000556353 PCDHB3Q9Y5E6 796 aa12.85□□□□□ -0.35
PRPF39-209ENST00000556353 COPS2P61201 443 aa12.84□□□□□ -0.35
PRPF39-209ENST00000556353 ACTN4O43707 911 aaKnown RBP12.82□□□□□ -0.36
PRPF39-209ENST00000556353 DDX11L8A8MPP1 907 aa12.81□□□□□ -0.36
PRPF39-209ENST00000556353 SULF1Q8IWU6 871 aa12.81□□□□□ -0.36
PRPF39-209ENST00000556353 RDH13Q8NBN7 331 aa12.81□□□□□ -0.36
PRPF39-209ENST00000556353 ZNF516Q92618 1163 aa12.81□□□□□ -0.36
PRPF39-209ENST00000556353 CCDC102AQ96A19 550 aa12.81□□□□□ -0.36
PRPF39-209ENST00000556353 RGS20O76081 388 aa12.79□□□□□ -0.36
PRPF39-209ENST00000556353 BLOC1S3Q6QNY0 202 aa12.79□□□□□ -0.36
PRPF39-209ENST00000556353 ZC3H15Q8WU90 426 aaKnown RBP12.79□□□□□ -0.36
PRPF39-209ENST00000556353 KRI1Q8N9T8 703 aaKnown RBP12.78□□□□□ -0.36
PRPF39-209ENST00000556353 ZPR1O75312 459 aa12.77□□□□□ -0.37
PRPF39-209ENST00000556353 ZMYND10O75800 440 aa12.76□□□□□ -0.37
PRPF39-209ENST00000556353 BARGINQ6ZT62 677 aa12.76□□□□□ -0.37
PRPF39-209ENST00000556353 NKX2-3Q8TAU0 364 aa12.75□□□□□ -0.37
PRPF39-209ENST00000556353 MDM2Q00987 491 aaPredicted RBP12.74□□□□□ -0.37
PRPF39-209ENST00000556353 NR1I2O75469 434 aa12.72□□□□□ -0.37
PRPF39-209ENST00000556353 GCGRP47871 477 aa12.71□□□□□ -0.37
PRPF39-209ENST00000556353 CLCN1P35523 988 aa12.7□□□□□ -0.38
PRPF39-209ENST00000556353 PPP1R18Q6NYC8 613 aa12.7□□□□□ -0.38
PRPF39-209ENST00000556353 FUT2Q10981 343 aa12.69□□□□□ -0.38
PRPF39-209ENST00000556353 PUS10Q3MIT2 529 aaKnown RBP12.69□□□□□ -0.38
PRPF39-209ENST00000556353 GPCPD1Q9NPB8 672 aa12.69□□□□□ -0.38
PRPF39-209ENST00000556353 GGCXP38435 758 aa12.68□□□□□ -0.38
PRPF39-209ENST00000556353 BCANQ96GW7 911 aa12.68□□□□□ -0.38
PRPF39-209ENST00000556353 EIF4ENIF1Q9NRA8 985 aaKnown RBP12.68□□□□□ -0.38
PRPF39-209ENST00000556353 TLL1O43897 1013 aa12.67□□□□□ -0.38
PRPF39-209ENST00000556353 CD46P15529 392 aa12.67□□□□□ -0.38
PRPF39-209ENST00000556353 ATP6V1AP38606 617 aa12.66□□□□□ -0.38
PRPF39-209ENST00000556353 SCUBE3Q8IX30 993 aa12.66□□□□□ -0.38
PRPF39-209ENST00000556353 MORN1Q5T089 497 aa12.64□□□□□ -0.39
PRPF39-209ENST00000556353 GRIPAP1Q4V328 841 aa12.63□□□□□ -0.39
PRPF39-209ENST00000556353 TMUB1Q9BVT8 246 aa12.63□□□□□ -0.39
PRPF39-209ENST00000556353 FAM217BQ9NTX9 383 aaPredicted RBP12.63□□□□□ -0.39
PRPF39-209ENST00000556353 ADH1BP00325 375 aa12.62□□□□□ -0.39
PRPF39-209ENST00000556353 TTLL12Q14166 644 aaPredicted RBP12.61□□□□□ -0.39
PRPF39-209ENST00000556353 AMHR2Q16671 573 aa12.61□□□□□ -0.39
PRPF39-209ENST00000556353 KDM4AO75164 1064 aa12.59□□□□□ -0.39
PRPF39-209ENST00000556353 AK7Q96M32 723 aa12.59□□□□□ -0.39
PRPF39-209ENST00000556353 SPSB2Q99619 263 aa12.59□□□□□ -0.39
PRPF39-209ENST00000556353 REPIN1Q9BWE0 567 aaKnown RBP12.59□□□□□ -0.39
PRPF39-209ENST00000556353 SLC27A5Q9Y2P5 690 aa12.59□□□□□ -0.39
PRPF39-209ENST00000556353 S1PR4O95977 384 aa12.57□□□□□ -0.4
PRPF39-209ENST00000556353 USP46P62068 366 aa12.57□□□□□ -0.4
PRPF39-209ENST00000556353 PRKD2Q9BZL6 878 aa12.57□□□□□ -0.4
PRPF39-209ENST00000556353 SLC6A16Q9GZN6 736 aa12.57□□□□□ -0.4
PRPF39-209ENST00000556353 RNF223E7ERA6 249 aa12.56□□□□□ -0.4
PRPF39-209ENST00000556353 FMNL1O95466 1100 aaPredicted RBP12.56□□□□□ -0.4
PRPF39-209ENST00000556353 SSTR3P32745 418 aaPredicted RBP12.55□□□□□ -0.4
PRPF39-209ENST00000556353 TRIM66O15016 1216 aa12.54□□□□□ -0.4
PRPF39-209ENST00000556353 THAP11Q96EK4 314 aa12.54□□□□□ -0.4
PRPF39-209ENST00000556353 IRX2Q9BZI1 471 aaPredicted RBP12.54□□□□□ -0.4
PRPF39-209ENST00000556353 SALL2Q9Y467 1007 aaPredicted RBP12.54□□□□□ -0.4
PRPF39-209ENST00000556353 V9GY48 417 aaPredicted RBP12.54□□□□□ -0.4
PRPF39-209ENST00000556353 GIGYF2Q6Y7W6 1299 aaKnown RBP12.53□□□□□ -0.4
PRPF39-209ENST00000556353 NUTM1Q86Y26 1132 aa12.53□□□□□ -0.4
PRPF39-209ENST00000556353 Q3C1V9 767 aa12.52□□□□□ -0.41
PRPF39-209ENST00000556353 ANKLE1Q8NAG6 615 aa12.52□□□□□ -0.41
PRPF39-209ENST00000556353 SLC24A3Q9HC58 644 aa12.51□□□□□ -0.41
PRPF39-209ENST00000556353 PPEF1O14829 653 aaPredicted RBP12.5□□□□□ -0.41
PRPF39-209ENST00000556353 HOXA2O43364 376 aa12.5□□□□□ -0.41
PRPF39-209ENST00000556353 BRICD5Q6PL45 260 aa12.5□□□□□ -0.41
PRPF39-209ENST00000556353 RNF19BQ6ZMZ0 732 aa12.5□□□□□ -0.41
PRPF39-209ENST00000556353 PARP9Q8IXQ6 854 aa12.5□□□□□ -0.41
PRPF39-209ENST00000556353 FAM160A2Q8N612 972 aaPredicted RBP12.47□□□□□ -0.41
PRPF39-209ENST00000556353 HLA-CQ95604 372 aa12.47□□□□□ -0.41
PRPF39-209ENST00000556353 SLC19A1P41440 591 aa12.45□□□□□ -0.42
PRPF39-209ENST00000556353 PDE4DQ08499 809 aa12.45□□□□□ -0.42
PRPF39-209ENST00000556353 MSS51Q4VC12 460 aa12.44□□□□□ -0.42
PRPF39-209ENST00000556353 SPIRE2Q8WWL2 714 aa12.44□□□□□ -0.42
PRPF39-209ENST00000556353 BEGAINQ9BUH8 593 aa12.44□□□□□ -0.42
PRPF39-209ENST00000556353 GUCA2AQ02747 115 aa12.43□□□□□ -0.42
PRPF39-209ENST00000556353 USB1Q9BQ65 265 aaKnown RBP12.43□□□□□ -0.42
PRPF39-209ENST00000556353 PRDM9Q9NQV7 894 aa12.43□□□□□ -0.42
PRPF39-209ENST00000556353 MS4A1P11836 297 aa12.41□□□□□ -0.42
PRPF39-209ENST00000556353 EMID1Q96A84 441 aaPredicted RBP12.41□□□□□ -0.42
PRPF39-209ENST00000556353 FCF1Q9Y324 198 aaKnown RBP12.41□□□□□ -0.42
PRPF39-209ENST00000556353 FDX1P10109 184 aa12.4□□□□□ -0.42
PRPF39-209ENST00000556353 LIAT1Q6ZQX7 453 aa12.4□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 251.1 ms