RNA–Protein interactions for RNA: ENST00000553340.1

SYNE3-202, Transcript of spectrin repeat containing nuclear envelope family member 3, humanhuman

TSL 1 (best) BASIC

Gene SYNE3, Length 2,615 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3-202ENST00000553340 CLASP1Q7Z460 1538 aa22.88■■□□□ 1.25
SYNE3-202ENST00000553340 SYNMO15061 1565 aa22.87■■□□□ 1.25
SYNE3-202ENST00000553340 IQGAP1P46940 1657 aa22.87■■□□□ 1.25
SYNE3-202ENST00000553340 PIK3C2GO75747 1445 aa22.86■■□□□ 1.25
SYNE3-202ENST00000553340 SLFN5Q08AF3 891 aa22.86■■□□□ 1.25
SYNE3-202ENST00000553340 NFKBIBQ15653 356 aa22.86■■□□□ 1.25
SYNE3-202ENST00000553340 C8orf34Q49A92 452 aa22.86■■□□□ 1.25
SYNE3-202ENST00000553340 MADDQ8WXG6 1647 aa22.85■■□□□ 1.25
SYNE3-202ENST00000553340 ASXL1Q8IXJ9 1541 aa22.85■■□□□ 1.25
SYNE3-202ENST00000553340 GSE1Q14687 1217 aa22.84■■□□□ 1.25
SYNE3-202ENST00000553340 SLC4A3P48751 1232 aa22.83■■□□□ 1.25
SYNE3-202ENST00000553340 SCAF11Q99590 1463 aaKnown RBP22.82■■□□□ 1.24
SYNE3-202ENST00000553340 EIF3AQ14152 1382 aaKnown RBP22.82■■□□□ 1.24
SYNE3-202ENST00000553340 STAC3Q96MF2 364 aa22.82■■□□□ 1.24
SYNE3-202ENST00000553340 NPC1L1Q9UHC9 1359 aa22.82■■□□□ 1.24
SYNE3-202ENST00000553340 TRMT2AQ8IZ69 625 aaKnown RBP22.81■■□□□ 1.24
SYNE3-202ENST00000553340 SCAPERQ9BY12 1400 aa22.79■■□□□ 1.24
SYNE3-202ENST00000553340 RGS3P49796 1198 aa22.78■■□□□ 1.24
SYNE3-202ENST00000553340 NKTRP30414 1462 aaKnown RBP22.78■■□□□ 1.24
SYNE3-202ENST00000553340 RTN4Q9NQC3 1192 aaKnown RBP22.78■■□□□ 1.24
SYNE3-202ENST00000553340 ABCC2Q92887 1545 aa22.77■■□□□ 1.24
SYNE3-202ENST00000553340 CCDC146Q8IYE0 955 aa22.77■■□□□ 1.24
SYNE3-202ENST00000553340 SPHKAPQ2M3C7 1700 aa22.77■■□□□ 1.24
SYNE3-202ENST00000553340 TRPM2O94759 1503 aa22.75■■□□□ 1.23
SYNE3-202ENST00000553340 APAF1O14727 1248 aa22.75■■□□□ 1.23
SYNE3-202ENST00000553340 MYOM1P52179 1685 aa22.75■■□□□ 1.23
SYNE3-202ENST00000553340 E9PSI1 815 aa22.74■■□□□ 1.23
SYNE3-202ENST00000553340 PLCH2O75038 1416 aa22.74■■□□□ 1.23
SYNE3-202ENST00000553340 EFCAB2Q5VUJ9 269 aa22.74■■□□□ 1.23
SYNE3-202ENST00000553340 CEP152O94986 1710 aa22.73■■□□□ 1.23
SYNE3-202ENST00000553340 SPINK5Q9NQ38 1064 aaPredicted RBP22.73■■□□□ 1.23
SYNE3-202ENST00000553340 NGEFQ8N5V2 710 aa22.72■■□□□ 1.23
SYNE3-202ENST00000553340 BCAR3O75815 825 aa22.71■■□□□ 1.23
SYNE3-202ENST00000553340 KDM5AP29375 1690 aaKnown RBP22.7■■□□□ 1.23
SYNE3-202ENST00000553340 FRAT1Q92837 279 aaPredicted RBP22.7■■□□□ 1.22
SYNE3-202ENST00000553340 ANO8Q9HCE9 1232 aaPredicted RBP22.7■■□□□ 1.22
SYNE3-202ENST00000553340 PTPRTO14522 1441 aa22.7■■□□□ 1.22
SYNE3-202ENST00000553340 SLC24A1O60721 1099 aa22.7■■□□□ 1.22
SYNE3-202ENST00000553340 ABCC1P33527 1531 aa22.69■■□□□ 1.22
SYNE3-202ENST00000553340 TRAPPC8Q9Y2L5 1435 aa22.68■■□□□ 1.22
SYNE3-202ENST00000553340 CGNL1Q0VF96 1302 aa22.68■■□□□ 1.22
SYNE3-202ENST00000553340 CLTCL1P53675 1640 aa22.68■■□□□ 1.22
SYNE3-202ENST00000553340 BRPF3Q9ULD4 1205 aa22.67■■□□□ 1.22
SYNE3-202ENST00000553340 PDE3AQ14432 1141 aa22.67■■□□□ 1.22
SYNE3-202ENST00000553340 SHROOM2Q13796 1616 aa22.66■■□□□ 1.22
SYNE3-202ENST00000553340 KIAA1210Q9ULL0 1709 aa22.66■■□□□ 1.22
SYNE3-202ENST00000553340 SPAG9O60271 1321 aaKnown RBP22.65■■□□□ 1.22
SYNE3-202ENST00000553340 NINLQ9Y2I6 1382 aa22.65■■□□□ 1.22
SYNE3-202ENST00000553340 FRAT2O75474 233 aaPredicted RBP22.64■■□□□ 1.22
SYNE3-202ENST00000553340 IGHDP01880 384 aa22.64■■□□□ 1.22
SYNE3-202ENST00000553340 VIRMAQ69YN4 1812 aaKnown RBP22.63■■□□□ 1.21
SYNE3-202ENST00000553340 MAPK8IP3Q9UPT6 1336 aa22.63■■□□□ 1.21
SYNE3-202ENST00000553340 RTEL1-TNFRSF6BF6WH68 1400 aa22.62■■□□□ 1.21
SYNE3-202ENST00000553340 CHD1O14646 1710 aa22.62■■□□□ 1.21
SYNE3-202ENST00000553340 CENPJQ9HC77 1338 aaPredicted RBP22.62■■□□□ 1.21
SYNE3-202ENST00000553340 CANXP27824 592 aaKnown RBP22.61■■□□□ 1.21
SYNE3-202ENST00000553340 CLUAP1Q96AJ1 413 aa22.61■■□□□ 1.21
SYNE3-202ENST00000553340 DMRT2Q9Y5R5 561 aa22.61■■□□□ 1.21
SYNE3-202ENST00000553340 TET3O43151 1660 aa22.6■■□□□ 1.21
SYNE3-202ENST00000553340 ERVK-7P63135 1459 aa22.6■■□□□ 1.21
SYNE3-202ENST00000553340 CARD14Q9BXL6 1004 aa22.59■■□□□ 1.21
SYNE3-202ENST00000553340 DEPDC5O75140 1603 aa22.59■■□□□ 1.21
SYNE3-202ENST00000553340 KANK1Q14678 1352 aa22.59■■□□□ 1.21
SYNE3-202ENST00000553340 USP19O94966 1318 aa22.58■■□□□ 1.21
SYNE3-202ENST00000553340 ZFYVE16Q7Z3T8 1539 aa22.58■■□□□ 1.2
SYNE3-202ENST00000553340 WWC1Q8IX03 1113 aa22.58■■□□□ 1.2
SYNE3-202ENST00000553340 POLR3AO14802 1390 aaPredicted RBP22.57■■□□□ 1.2
SYNE3-202ENST00000553340 CFAP70Q5T0N1 1121 aa22.57■■□□□ 1.2
SYNE3-202ENST00000553340 AFAP1Q8N556 730 aa22.57■■□□□ 1.2
SYNE3-202ENST00000553340 ERCC6L2Q5T890 1561 aa22.57■■□□□ 1.2
SYNE3-202ENST00000553340 NEURL4Q96JN8 1562 aa22.57■■□□□ 1.2
SYNE3-202ENST00000553340 COG6Q9Y2V7 657 aa22.57■■□□□ 1.2
SYNE3-202ENST00000553340 ZCCHC11Q5TAX3 1644 aaKnown RBP22.56■■□□□ 1.2
SYNE3-202ENST00000553340 PANK1Q8TE04 598 aa22.56■■□□□ 1.2
SYNE3-202ENST00000553340 BECN1Q14457 450 aa22.55■■□□□ 1.2
SYNE3-202ENST00000553340 MAP3K4Q9Y6R4 1608 aa22.55■■□□□ 1.2
SYNE3-202ENST00000553340 MYOM2P54296 1465 aa22.54■■□□□ 1.2
SYNE3-202ENST00000553340 AAMPQ13685 434 aa22.53■■□□□ 1.2
SYNE3-202ENST00000553340 ABCA6Q8N139 1617 aa22.52■■□□□ 1.2
SYNE3-202ENST00000553340 SEC24BO95487 1268 aa22.51■■□□□ 1.19
SYNE3-202ENST00000553340 PMFBP1Q8TBY8 1022 aa22.51■■□□□ 1.19
SYNE3-202ENST00000553340 VWDEQ8N2E2 1590 aa22.51■■□□□ 1.19
SYNE3-202ENST00000553340 ADGRF5Q8IZF2 1346 aa22.5■■□□□ 1.19
SYNE3-202ENST00000553340 ARAP3Q8WWN8 1544 aa22.5■■□□□ 1.19
SYNE3-202ENST00000553340 SBNO2Q9Y2G9 1366 aa22.5■■□□□ 1.19
SYNE3-202ENST00000553340 RUNDC1Q96C34 613 aa22.48■■□□□ 1.19
SYNE3-202ENST00000553340 UHRF1BP1LA0JNW5 1464 aa22.48■■□□□ 1.19
SYNE3-202ENST00000553340 KIF3BO15066 747 aa22.48■■□□□ 1.19
SYNE3-202ENST00000553340 RARSP54136 660 aaKnown RBP22.48■■□□□ 1.19
SYNE3-202ENST00000553340 MORC1Q86VD1 984 aa22.47■■□□□ 1.19
SYNE3-202ENST00000553340 NEUROD2Q15784 382 aa22.47■■□□□ 1.19
SYNE3-202ENST00000553340 UPF2Q9HAU5 1272 aaKnown RBP22.47■■□□□ 1.19
SYNE3-202ENST00000553340 MYO3AQ8NEV4 1616 aa22.46■■□□□ 1.19
SYNE3-202ENST00000553340 ZMYM3Q14202 1370 aa22.46■■□□□ 1.19
SYNE3-202ENST00000553340 ATP7AQ04656 1500 aa22.46■■□□□ 1.19
SYNE3-202ENST00000553340 NLRP1Q9C000 1473 aa22.45■■□□□ 1.19
SYNE3-202ENST00000553340 KIF1BO60333 1816 aa22.45■■□□□ 1.19
SYNE3-202ENST00000553340 UGGT1Q9NYU2 1555 aa22.45■■□□□ 1.18
SYNE3-202ENST00000553340 SHPRHQ149N8 1683 aa22.45■■□□□ 1.18
SYNE3-202ENST00000553340 WDR63Q8IWG1 891 aa22.44■■□□□ 1.18
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms