RNA–Protein interactions for RNA: ENST00000552720.5

LIMA1-213, Transcript of LIM domain and actin binding 1, humanhuman

TSL 1 (best)

Gene LIMA1, Length 2,457 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-213ENST00000552720 MYOM1P52179 1685 aa9.95□□□□□ -0.82
LIMA1-213ENST00000552720 C20orf194Q5TEA3 1177 aa9.95□□□□□ -0.82
LIMA1-213ENST00000552720 PPP2R1AP30153 589 aa9.94□□□□□ -0.82
LIMA1-213ENST00000552720 ZFYVE16Q7Z3T8 1539 aa9.94□□□□□ -0.82
LIMA1-213ENST00000552720 PLEKHH1Q9ULM0 1364 aa9.94□□□□□ -0.82
LIMA1-213ENST00000552720 SPAG9O60271 1321 aaKnown RBP9.93□□□□□ -0.82
LIMA1-213ENST00000552720 DEKP35659 375 aaKnown RBP9.93□□□□□ -0.82
LIMA1-213ENST00000552720 TRPM2O94759 1503 aa9.93□□□□□ -0.82
LIMA1-213ENST00000552720 PDE4AP27815 886 aa9.93□□□□□ -0.82
LIMA1-213ENST00000552720 UGGT1Q9NYU2 1555 aa9.93□□□□□ -0.82
LIMA1-213ENST00000552720 ZBTB47Q9UFB7 747 aaPredicted RBP9.92□□□□□ -0.82
LIMA1-213ENST00000552720 KNSTRNQ9Y448 316 aa9.92□□□□□ -0.82
LIMA1-213ENST00000552720 CFAP65Q6ZU64 1925 aaKnown RBP9.92□□□□□ -0.82
LIMA1-213ENST00000552720 DEPDC5O75140 1603 aa9.91□□□□□ -0.82
LIMA1-213ENST00000552720 SYNMO15061 1565 aa9.91□□□□□ -0.82
LIMA1-213ENST00000552720 TCERG1O14776 1098 aaKnown RBP9.91□□□□□ -0.82
LIMA1-213ENST00000552720 CCDC146Q8IYE0 955 aa9.91□□□□□ -0.82
LIMA1-213ENST00000552720 TET3O43151 1660 aa9.91□□□□□ -0.82
LIMA1-213ENST00000552720 SCAF11Q99590 1463 aaKnown RBP9.9□□□□□ -0.82
LIMA1-213ENST00000552720 CLASP1Q7Z460 1538 aa9.9□□□□□ -0.82
LIMA1-213ENST00000552720 BACH2Q9BYV9 841 aa9.9□□□□□ -0.82
LIMA1-213ENST00000552720 KDM5AP29375 1690 aaKnown RBP9.9□□□□□ -0.83
LIMA1-213ENST00000552720 WDR43Q15061 677 aaKnown RBP eCLIP9.9□□□□□ -0.83
LIMA1-213ENST00000552720 ASXL1Q8IXJ9 1541 aa9.89□□□□□ -0.83
LIMA1-213ENST00000552720 INSRP06213 1382 aa9.89□□□□□ -0.83
LIMA1-213ENST00000552720 PTPRTO14522 1441 aa9.89□□□□□ -0.83
LIMA1-213ENST00000552720 DUSP27Q5VZP5 1158 aa9.89□□□□□ -0.83
LIMA1-213ENST00000552720 MYT1LQ9UL68 1186 aa9.89□□□□□ -0.83
LIMA1-213ENST00000552720 KIF3BO15066 747 aa9.89□□□□□ -0.83
LIMA1-213ENST00000552720 ATP7AQ04656 1500 aa9.88□□□□□ -0.83
LIMA1-213ENST00000552720 ABCA6Q8N139 1617 aa9.88□□□□□ -0.83
LIMA1-213ENST00000552720 MROH2AA6NES4 1674 aa9.88□□□□□ -0.83
LIMA1-213ENST00000552720 UHRF1BP1LA0JNW5 1464 aa9.88□□□□□ -0.83
LIMA1-213ENST00000552720 CFAP70Q5T0N1 1121 aa9.88□□□□□ -0.83
LIMA1-213ENST00000552720 POTEDQ86YR6 584 aa9.88□□□□□ -0.83
LIMA1-213ENST00000552720 INO80Q9ULG1 1556 aaPredicted RBP9.88□□□□□ -0.83
LIMA1-213ENST00000552720 KIF1BO60333 1816 aa9.88□□□□□ -0.83
LIMA1-213ENST00000552720 SPINK5Q9NQ38 1064 aaPredicted RBP9.87□□□□□ -0.83
LIMA1-213ENST00000552720 ZNF521Q96K83 1311 aa9.87□□□□□ -0.83
LIMA1-213ENST00000552720 RTEL1-TNFRSF6BF6WH68 1400 aa9.87□□□□□ -0.83
LIMA1-213ENST00000552720 SCAPERQ9BY12 1400 aa9.87□□□□□ -0.83
LIMA1-213ENST00000552720 MROH1Q8NDA8 1641 aa9.87□□□□□ -0.83
LIMA1-213ENST00000552720 KIAA1210Q9ULL0 1709 aa9.87□□□□□ -0.83
LIMA1-213ENST00000552720 ADGRF5Q8IZF2 1346 aa9.86□□□□□ -0.83
LIMA1-213ENST00000552720 FANCAO15360 1455 aa9.86□□□□□ -0.83
LIMA1-213ENST00000552720 ABCA9Q8IUA7 1624 aa9.86□□□□□ -0.83
LIMA1-213ENST00000552720 MAP3K4Q9Y6R4 1608 aa9.86□□□□□ -0.83
LIMA1-213ENST00000552720 LAS1LQ9Y4W2 734 aaKnown RBP9.86□□□□□ -0.83
LIMA1-213ENST00000552720 VWDEQ8N2E2 1590 aa9.86□□□□□ -0.83
LIMA1-213ENST00000552720 IFT172Q9UG01 1749 aa9.86□□□□□ -0.83
LIMA1-213ENST00000552720 MS4A1P11836 297 aa9.85□□□□□ -0.83
LIMA1-213ENST00000552720 GOLGA2Q08379 1002 aa9.85□□□□□ -0.83
LIMA1-213ENST00000552720 ERVK-7P63135 1459 aa9.85□□□□□ -0.83
LIMA1-213ENST00000552720 APAF1O14727 1248 aa9.85□□□□□ -0.83
LIMA1-213ENST00000552720 PRKCSHP14314 528 aaPredicted RBP9.85□□□□□ -0.83
LIMA1-213ENST00000552720 PIK3C2GO75747 1445 aa9.85□□□□□ -0.83
LIMA1-213ENST00000552720 KDM2BQ8NHM5 1336 aa9.84□□□□□ -0.83
LIMA1-213ENST00000552720 CDCA8Q53HL2 280 aa9.84□□□□□ -0.83
LIMA1-213ENST00000552720 CARD14Q9BXL6 1004 aa9.84□□□□□ -0.83
LIMA1-213ENST00000552720 DMRT2Q9Y5R5 561 aa9.84□□□□□ -0.83
LIMA1-213ENST00000552720 ARAP3Q8WWN8 1544 aa9.84□□□□□ -0.83
LIMA1-213ENST00000552720 KANK1Q14678 1352 aa9.84□□□□□ -0.83
LIMA1-213ENST00000552720 PPRC1Q5VV67 1664 aaKnown RBP9.83□□□□□ -0.84
LIMA1-213ENST00000552720 SLFN5Q08AF3 891 aa9.83□□□□□ -0.84
LIMA1-213ENST00000552720 ADGRL1O94910 1474 aa9.83□□□□□ -0.84
LIMA1-213ENST00000552720 KIDINS220Q9ULH0 1771 aa9.83□□□□□ -0.84
LIMA1-213ENST00000552720 EIF3AQ14152 1382 aaKnown RBP9.83□□□□□ -0.84
LIMA1-213ENST00000552720 BCAR3O75815 825 aa9.82□□□□□ -0.84
LIMA1-213ENST00000552720 RTL5Q5HYW3 569 aaPredicted RBP9.82□□□□□ -0.84
LIMA1-213ENST00000552720 EFCAB6Q5THR3 1501 aa9.81□□□□□ -0.84
LIMA1-213ENST00000552720 CHGAP10645 457 aaKnown RBP9.81□□□□□ -0.84
LIMA1-213ENST00000552720 SLC4A3P48751 1232 aa9.81□□□□□ -0.84
LIMA1-213ENST00000552720 TRMT2AQ8IZ69 625 aaKnown RBP9.8□□□□□ -0.84
LIMA1-213ENST00000552720 NPC1L1Q9UHC9 1359 aa9.8□□□□□ -0.84
LIMA1-213ENST00000552720 MYOM2P54296 1465 aa9.8□□□□□ -0.84
LIMA1-213ENST00000552720 TNNT2P45379 298 aaPredicted RBP9.8□□□□□ -0.84
LIMA1-213ENST00000552720 RGS3P49796 1198 aa9.8□□□□□ -0.84
LIMA1-213ENST00000552720 STAC3Q96MF2 364 aa9.8□□□□□ -0.84
LIMA1-213ENST00000552720 SHPRHQ149N8 1683 aa9.8□□□□□ -0.84
LIMA1-213ENST00000552720 NOS1P29475 1434 aa9.79□□□□□ -0.84
LIMA1-213ENST00000552720 CENPQQ7L2Z9 268 aaPredicted RBP9.79□□□□□ -0.84
LIMA1-213ENST00000552720 NKTRP30414 1462 aaKnown RBP9.79□□□□□ -0.84
LIMA1-213ENST00000552720 MYO3AQ8NEV4 1616 aa9.79□□□□□ -0.84
LIMA1-213ENST00000552720 NEFMP07197 916 aa9.79□□□□□ -0.84
LIMA1-213ENST00000552720 FOXD4L1Q9NU39 408 aa9.79□□□□□ -0.84
LIMA1-213ENST00000552720 TRAK1Q9UPV9 953 aa9.79□□□□□ -0.84
LIMA1-213ENST00000552720 ZC3H13Q5T200 1668 aaKnown RBP9.79□□□□□ -0.84
LIMA1-213ENST00000552720 QRICH2Q9H0J4 1663 aa9.79□□□□□ -0.84
LIMA1-213ENST00000552720 PPLO60437 1756 aa9.78□□□□□ -0.84
LIMA1-213ENST00000552720 NEUROD2Q15784 382 aa9.78□□□□□ -0.84
LIMA1-213ENST00000552720 NEURL4Q96JN8 1562 aa9.78□□□□□ -0.84
LIMA1-213ENST00000552720 C8orf34Q49A92 452 aa9.78□□□□□ -0.84
LIMA1-213ENST00000552720 TMEM132EQ6IEE7 984 aa9.78□□□□□ -0.84
LIMA1-213ENST00000552720 GOLGA6L2Q8N9W4 650 aaPredicted RBP9.77□□□□□ -0.85
LIMA1-213ENST00000552720 SLC12A5Q9H2X9 1139 aa9.77□□□□□ -0.85
LIMA1-213ENST00000552720 RRP7AQ9Y3A4 280 aaKnown RBP9.77□□□□□ -0.85
LIMA1-213ENST00000552720 ASXL2Q76L83 1435 aa9.77□□□□□ -0.85
LIMA1-213ENST00000552720 NSD3Q9BZ95 1437 aa9.76□□□□□ -0.85
LIMA1-213ENST00000552720 NUTM2DQ5VT03 806 aaPredicted RBP9.76□□□□□ -0.85
LIMA1-213ENST00000552720 NRXN1Q9ULB1 1477 aa9.76□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms