RNA–Protein interactions for RNA: ENST00000551486.1

LIMA1-207, Transcript of LIM domain and actin binding 1, humanhuman

TSL 2

Gene LIMA1, Length 587 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-207ENST00000551486 POTECB2RU33 542 aa5.53□□□□□ -1.52
LIMA1-207ENST00000551486 E2F4Q16254 413 aa5.53□□□□□ -1.52
LIMA1-207ENST00000551486 KMT5BQ4FZB7 885 aa5.53□□□□□ -1.52
LIMA1-207ENST00000551486 LCE2AQ5TA79 106 aaPredicted RBP5.53□□□□□ -1.52
LIMA1-207ENST00000551486 STK17AQ9UEE5 414 aa5.53□□□□□ -1.52
LIMA1-207ENST00000551486 BLOC1S3Q6QNY0 202 aa5.52□□□□□ -1.53
LIMA1-207ENST00000551486 PADI6Q6TGC4 694 aa5.52□□□□□ -1.53
LIMA1-207ENST00000551486 CDHR5Q9HBB8 845 aa5.52□□□□□ -1.53
LIMA1-207ENST00000551486 TNFRSF10AO00220 468 aa5.51□□□□□ -1.53
LIMA1-207ENST00000551486 OSBPP22059 807 aa5.51□□□□□ -1.53
LIMA1-207ENST00000551486 ARIH1Q9Y4X5 557 aaPredicted RBP5.51□□□□□ -1.53
LIMA1-207ENST00000551486 GDF9O60383 454 aa5.5□□□□□ -1.53
LIMA1-207ENST00000551486 NR1I2O75469 434 aa5.5□□□□□ -1.53
LIMA1-207ENST00000551486 WFS1O76024 890 aa5.5□□□□□ -1.53
LIMA1-207ENST00000551486 S1PR4O95977 384 aa5.5□□□□□ -1.53
LIMA1-207ENST00000551486 PRIM1P49642 420 aaKnown RBP5.5□□□□□ -1.53
LIMA1-207ENST00000551486 LMOD2Q6P5Q4 547 aa5.5□□□□□ -1.53
LIMA1-207ENST00000551486 LIAT1Q6ZQX7 453 aa5.5□□□□□ -1.53
LIMA1-207ENST00000551486 TTC13Q8NBP0 860 aa5.5□□□□□ -1.53
LIMA1-207ENST00000551486 AAASQ9NRG9 546 aa5.5□□□□□ -1.53
LIMA1-207ENST00000551486 PPEF1O14829 653 aaPredicted RBP5.49□□□□□ -1.53
LIMA1-207ENST00000551486 DNAJB2P25686 324 aa5.49□□□□□ -1.53
LIMA1-207ENST00000551486 INSM1Q01101 510 aaPredicted RBP5.49□□□□□ -1.53
LIMA1-207ENST00000551486 EYA1Q99502 592 aa5.49□□□□□ -1.53
LIMA1-207ENST00000551486 ST8SIA5O15466 376 aa5.48□□□□□ -1.53
LIMA1-207ENST00000551486 TLL1O43897 1013 aa5.48□□□□□ -1.53
LIMA1-207ENST00000551486 ADH1BP00325 375 aa5.48□□□□□ -1.53
LIMA1-207ENST00000551486 RBM46Q8TBY0 533 aaKnown RBP5.48□□□□□ -1.53
LIMA1-207ENST00000551486 EMID1Q96A84 441 aaPredicted RBP5.48□□□□□ -1.53
LIMA1-207ENST00000551486 SLC6A16Q9GZN6 736 aa5.48□□□□□ -1.53
LIMA1-207ENST00000551486 C11orf95C9JLR9 678 aaPredicted RBP5.47□□□□□ -1.53
LIMA1-207ENST00000551486 ACTN4O43707 911 aaKnown RBP5.47□□□□□ -1.53
LIMA1-207ENST00000551486 FOXC1Q12948 553 aa5.47□□□□□ -1.53
LIMA1-207ENST00000551486 AXIN1O15169 862 aa5.46□□□□□ -1.54
LIMA1-207ENST00000551486 RSPH4AQ5TD94 716 aa5.46□□□□□ -1.54
LIMA1-207ENST00000551486 BBXQ8WY36 941 aaPredicted RBP5.46□□□□□ -1.54
LIMA1-207ENST00000551486 NPDC1Q9NQX5 325 aaPredicted RBP5.46□□□□□ -1.54
LIMA1-207ENST00000551486 CD2BP2O95400 341 aaKnown RBP5.45□□□□□ -1.54
LIMA1-207ENST00000551486 CFHP08603 1231 aa5.45□□□□□ -1.54
LIMA1-207ENST00000551486 CTC1Q2NKJ3 1217 aa5.45□□□□□ -1.54
LIMA1-207ENST00000551486 CYP4X1Q8N118 509 aa5.45□□□□□ -1.54
LIMA1-207ENST00000551486 CRIPAKQ8N1N5 446 aa5.45□□□□□ -1.54
LIMA1-207ENST00000551486 SPRYD3Q8NCJ5 442 aa5.44□□□□□ -1.54
LIMA1-207ENST00000551486 TMEM134Q9H6X4 195 aa5.44□□□□□ -1.54
LIMA1-207ENST00000551486 FAM181BA6NEQ2 426 aa5.43□□□□□ -1.54
LIMA1-207ENST00000551486 RPIAP49247 311 aa5.43□□□□□ -1.54
LIMA1-207ENST00000551486 SUZ12Q15022 739 aaKnown RBP5.43□□□□□ -1.54
LIMA1-207ENST00000551486 WIPF1O43516 503 aa5.42□□□□□ -1.54
LIMA1-207ENST00000551486 AVPP01185 164 aa5.42□□□□□ -1.54
LIMA1-207ENST00000551486 PKD2L1Q9P0L9 805 aa5.42□□□□□ -1.54
LIMA1-207ENST00000551486 ZBTB4Q9P1Z0 1013 aaPredicted RBP5.42□□□□□ -1.54
LIMA1-207ENST00000551486 GMPR2Q9P2T1 348 aaKnown RBP5.42□□□□□ -1.54
LIMA1-207ENST00000551486 TTC24A2A3L6 582 aaPredicted RBP5.41□□□□□ -1.54
LIMA1-207ENST00000551486 SCUBE3Q8IX30 993 aa5.41□□□□□ -1.54
LIMA1-207ENST00000551486 SPSB2Q99619 263 aa5.41□□□□□ -1.54
LIMA1-207ENST00000551486 RCCD1A6NED2 376 aa5.4□□□□□ -1.54
LIMA1-207ENST00000551486 ZBTB24O43167 697 aaPredicted RBP5.4□□□□□ -1.54
LIMA1-207ENST00000551486 SMCPP49901 116 aaPredicted RBP5.4□□□□□ -1.54
LIMA1-207ENST00000551486 PLA2G2CQ5R387 149 aa5.4□□□□□ -1.54
LIMA1-207ENST00000551486 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP5.39□□□□□ -1.55
LIMA1-207ENST00000551486 NFX1Q12986 1120 aaKnown RBP5.39□□□□□ -1.55
LIMA1-207ENST00000551486 SENP2Q9HC62 589 aa5.39□□□□□ -1.55
LIMA1-207ENST00000551486 TOR4AQ9NXH8 423 aa5.39□□□□□ -1.55
LIMA1-207ENST00000551486 DACH1Q9UI36 760 aa5.39□□□□□ -1.55
LIMA1-207ENST00000551486 ADGRG1Q9Y653 693 aa5.39□□□□□ -1.55
LIMA1-207ENST00000551486 PTGDRQ13258 359 aa5.37□□□□□ -1.55
LIMA1-207ENST00000551486 NUTM2FA1L443 756 aa5.36□□□□□ -1.55
LIMA1-207ENST00000551486 TERTO14746 1132 aaKnown RBP5.36□□□□□ -1.55
LIMA1-207ENST00000551486 OATP04181 439 aa5.36□□□□□ -1.55
LIMA1-207ENST00000551486 SLC10A3P09131 477 aa5.36□□□□□ -1.55
LIMA1-207ENST00000551486 SLC16A10Q8TF71 515 aa5.36□□□□□ -1.55
LIMA1-207ENST00000551486 KIFC2Q96AC6 838 aa5.36□□□□□ -1.55
LIMA1-207ENST00000551486 FCF1Q9Y324 198 aaKnown RBP5.36□□□□□ -1.55
LIMA1-207ENST00000551486 FMNL1O95466 1100 aaPredicted RBP5.35□□□□□ -1.55
LIMA1-207ENST00000551486 PUS10Q3MIT2 529 aaKnown RBP5.35□□□□□ -1.55
LIMA1-207ENST00000551486 SNIP1Q8TAD8 396 aaKnown RBP5.34□□□□□ -1.55
LIMA1-207ENST00000551486 ATP13A2Q9NQ11 1180 aa5.34□□□□□ -1.55
LIMA1-207ENST00000551486 FCHSD2O94868 740 aa5.33□□□□□ -1.56
LIMA1-207ENST00000551486 ARHGEF1Q92888 912 aaKnown RBP5.33□□□□□ -1.56
LIMA1-207ENST00000551486 TRIM47Q96LD4 638 aa5.33□□□□□ -1.56
LIMA1-207ENST00000551486 CFAP44Q96MT7 982 aa5.33□□□□□ -1.56
LIMA1-207ENST00000551486 WNT7AO00755 349 aa5.32□□□□□ -1.56
LIMA1-207ENST00000551486 SNRPBP14678 240 aaKnown RBP5.32□□□□□ -1.56
LIMA1-207ENST00000551486 ATP6V1AP38606 617 aa5.32□□□□□ -1.56
LIMA1-207ENST00000551486 FAM161AQ3B820 660 aa5.32□□□□□ -1.56
LIMA1-207ENST00000551486 RDH13Q8NBN7 331 aa5.32□□□□□ -1.56
LIMA1-207ENST00000551486 MLLT3P42568 568 aaPredicted RBP5.31□□□□□ -1.56
LIMA1-207ENST00000551486 SMPD1P17405 629 aa5.3□□□□□ -1.56
LIMA1-207ENST00000551486 GRIPAP1Q4V328 841 aa5.3□□□□□ -1.56
LIMA1-207ENST00000551486 MORN1Q5T089 497 aa5.3□□□□□ -1.56
LIMA1-207ENST00000551486 PAXIP1Q6ZW49 1069 aaPredicted RBP5.3□□□□□ -1.56
LIMA1-207ENST00000551486 PXYLP1Q8TE99 480 aa5.3□□□□□ -1.56
LIMA1-207ENST00000551486 REPIN1Q9BWE0 567 aaKnown RBP5.3□□□□□ -1.56
LIMA1-207ENST00000551486 SALL2Q9Y467 1007 aaPredicted RBP5.3□□□□□ -1.56
LIMA1-207ENST00000551486 ZSCAN1Q8NBB4 408 aa5.29□□□□□ -1.56
LIMA1-207ENST00000551486 THAP11Q96EK4 314 aa5.29□□□□□ -1.56
LIMA1-207ENST00000551486 DAXXQ9UER7 740 aaPredicted RBP5.29□□□□□ -1.56
LIMA1-207ENST00000551486 FECHP22830 423 aa5.28□□□□□ -1.56
LIMA1-207ENST00000551486 FUT2Q10981 343 aa5.28□□□□□ -1.56
LIMA1-207ENST00000551486 SULF1Q8IWU6 871 aa5.28□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms