RNA–Protein interactions for RNA: ENST00000550611.1

LIMA1-206, Transcript of LIM domain and actin binding 1, humanhuman

TSL 4

Gene LIMA1, Length 543 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-206ENST00000550611 PKDCCQ504Y2 493 aa8.59□□□□□ -1.03
LIMA1-206ENST00000550611 EMID1Q96A84 441 aaPredicted RBP8.59□□□□□ -1.03
LIMA1-206ENST00000550611 EYA1Q99502 592 aa8.59□□□□□ -1.03
LIMA1-206ENST00000550611 PCDHB3Q9Y5E6 796 aa8.59□□□□□ -1.03
LIMA1-206ENST00000550611 SPRYD7Q5W111 196 aa8.58□□□□□ -1.04
LIMA1-206ENST00000550611 ZNF598Q86UK7 904 aaKnown RBP8.57□□□□□ -1.04
LIMA1-206ENST00000550611 BLOC1S3Q6QNY0 202 aa8.56□□□□□ -1.04
LIMA1-206ENST00000550611 ANKLE1Q8NAG6 615 aa8.56□□□□□ -1.04
LIMA1-206ENST00000550611 WDR70Q9NW82 654 aa8.54□□□□□ -1.04
LIMA1-206ENST00000550611 SPRYD3Q8NCJ5 442 aa8.53□□□□□ -1.04
LIMA1-206ENST00000550611 POTECB2RU33 542 aa8.52□□□□□ -1.05
LIMA1-206ENST00000550611 ACTN4O43707 911 aaKnown RBP8.51□□□□□ -1.05
LIMA1-206ENST00000550611 ZNF697Q5TEC3 545 aa8.51□□□□□ -1.05
LIMA1-206ENST00000550611 LIAT1Q6ZQX7 453 aa8.51□□□□□ -1.05
LIMA1-206ENST00000550611 TLL1O43897 1013 aa8.5□□□□□ -1.05
LIMA1-206ENST00000550611 GDF9O60383 454 aa8.5□□□□□ -1.05
LIMA1-206ENST00000550611 DNAJB2P25686 324 aa8.5□□□□□ -1.05
LIMA1-206ENST00000550611 S1PR4O95977 384 aa8.49□□□□□ -1.05
LIMA1-206ENST00000550611 KMT5BQ4FZB7 885 aa8.49□□□□□ -1.05
LIMA1-206ENST00000550611 TMEM134Q9H6X4 195 aa8.49□□□□□ -1.05
LIMA1-206ENST00000550611 FAM187AA6NFU0 413 aa8.48□□□□□ -1.05
LIMA1-206ENST00000550611 LCE2AQ5TA79 106 aaPredicted RBP8.48□□□□□ -1.05
LIMA1-206ENST00000550611 TREML4Q6UXN2 200 aa8.48□□□□□ -1.05
LIMA1-206ENST00000550611 RBM46Q8TBY0 533 aaKnown RBP8.47□□□□□ -1.05
LIMA1-206ENST00000550611 TNFRSF10AO00220 468 aa8.46□□□□□ -1.06
LIMA1-206ENST00000550611 PPEF1O14829 653 aaPredicted RBP8.46□□□□□ -1.06
LIMA1-206ENST00000550611 ADH1BP00325 375 aa8.46□□□□□ -1.06
LIMA1-206ENST00000550611 LMOD2Q6P5Q4 547 aa8.46□□□□□ -1.06
LIMA1-206ENST00000550611 NR1I2O75469 434 aa8.45□□□□□ -1.06
LIMA1-206ENST00000550611 AAASQ9NRG9 546 aa8.45□□□□□ -1.06
LIMA1-206ENST00000550611 ZBTB4Q9P1Z0 1013 aaPredicted RBP8.45□□□□□ -1.06
LIMA1-206ENST00000550611 ADGRG1Q9Y653 693 aa8.45□□□□□ -1.06
LIMA1-206ENST00000550611 CFHP08603 1231 aa8.44□□□□□ -1.06
LIMA1-206ENST00000550611 PTGDRQ13258 359 aa8.44□□□□□ -1.06
LIMA1-206ENST00000550611 CRIPAKQ8N1N5 446 aa8.43□□□□□ -1.06
LIMA1-206ENST00000550611 SLC6A16Q9GZN6 736 aa8.43□□□□□ -1.06
LIMA1-206ENST00000550611 RCCD1A6NED2 376 aa8.42□□□□□ -1.06
LIMA1-206ENST00000550611 ST8SIA5O15466 376 aa8.42□□□□□ -1.06
LIMA1-206ENST00000550611 PLA2G2CQ5R387 149 aa8.41□□□□□ -1.06
LIMA1-206ENST00000550611 SLC10A3P09131 477 aa8.4□□□□□ -1.06
LIMA1-206ENST00000550611 PKD2L1Q9P0L9 805 aa8.4□□□□□ -1.06
LIMA1-206ENST00000550611 SCUBE3Q8IX30 993 aa8.39□□□□□ -1.07
LIMA1-206ENST00000550611 AVPP01185 164 aa8.38□□□□□ -1.07
LIMA1-206ENST00000550611 MLLT3P42568 568 aaPredicted RBP8.38□□□□□ -1.07
LIMA1-206ENST00000550611 RPIAP49247 311 aa8.38□□□□□ -1.07
LIMA1-206ENST00000550611 ARHGEF1Q92888 912 aaKnown RBP8.38□□□□□ -1.07
LIMA1-206ENST00000550611 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP8.37□□□□□ -1.07
LIMA1-206ENST00000550611 FOXC1Q12948 553 aa8.35□□□□□ -1.07
LIMA1-206ENST00000550611 SPSB2Q99619 263 aa8.35□□□□□ -1.07
LIMA1-206ENST00000550611 TOR4AQ9NXH8 423 aa8.35□□□□□ -1.07
LIMA1-206ENST00000550611 WFS1O76024 890 aa8.34□□□□□ -1.07
LIMA1-206ENST00000550611 CTC1Q2NKJ3 1217 aa8.34□□□□□ -1.07
LIMA1-206ENST00000550611 RSPH4AQ5TD94 716 aa8.34□□□□□ -1.07
LIMA1-206ENST00000550611 PAXIP1Q6ZW49 1069 aaPredicted RBP8.34□□□□□ -1.07
LIMA1-206ENST00000550611 CD2BP2O95400 341 aaKnown RBP8.33□□□□□ -1.08
LIMA1-206ENST00000550611 SMCPP49901 116 aaPredicted RBP8.33□□□□□ -1.08
LIMA1-206ENST00000550611 FAM161AQ3B820 660 aa8.33□□□□□ -1.08
LIMA1-206ENST00000550611 STK17AQ9UEE5 414 aa8.33□□□□□ -1.08
LIMA1-206ENST00000550611 DACH1Q9UI36 760 aa8.33□□□□□ -1.08
LIMA1-206ENST00000550611 AXIN1O15169 862 aa8.32□□□□□ -1.08
LIMA1-206ENST00000550611 OATP04181 439 aa8.32□□□□□ -1.08
LIMA1-206ENST00000550611 CFAP44Q96MT7 982 aa8.32□□□□□ -1.08
LIMA1-206ENST00000550611 NUTM2FA1L443 756 aa8.31□□□□□ -1.08
LIMA1-206ENST00000550611 WIPF1O43516 503 aa8.31□□□□□ -1.08
LIMA1-206ENST00000550611 CYP4X1Q8N118 509 aa8.31□□□□□ -1.08
LIMA1-206ENST00000550611 PXYLP1Q8TE99 480 aa8.31□□□□□ -1.08
LIMA1-206ENST00000550611 GMPR2Q9P2T1 348 aaKnown RBP8.31□□□□□ -1.08
LIMA1-206ENST00000550611 C11orf95C9JLR9 678 aaPredicted RBP8.3□□□□□ -1.08
LIMA1-206ENST00000550611 FCHSD2O94868 740 aa8.3□□□□□ -1.08
LIMA1-206ENST00000550611 NFX1Q12986 1120 aaKnown RBP8.3□□□□□ -1.08
LIMA1-206ENST00000550611 PUS10Q3MIT2 529 aaKnown RBP8.3□□□□□ -1.08
LIMA1-206ENST00000550611 THAP11Q96EK4 314 aa8.28□□□□□ -1.08
LIMA1-206ENST00000550611 FCF1Q9Y324 198 aaKnown RBP8.28□□□□□ -1.08
LIMA1-206ENST00000550611 INSM1Q01101 510 aaPredicted RBP8.27□□□□□ -1.09
LIMA1-206ENST00000550611 MORN1Q5T089 497 aa8.27□□□□□ -1.09
LIMA1-206ENST00000550611 METTL3Q86U44 580 aaKnown RBP8.26□□□□□ -1.09
LIMA1-206ENST00000550611 KCNV2Q8TDN2 545 aa8.26□□□□□ -1.09
LIMA1-206ENST00000550611 SALL2Q9Y467 1007 aaPredicted RBP8.25□□□□□ -1.09
LIMA1-206ENST00000550611 FAM160A2Q8N612 972 aaPredicted RBP8.24□□□□□ -1.09
LIMA1-206ENST00000550611 FMNL1O95466 1100 aaPredicted RBP8.23□□□□□ -1.09
LIMA1-206ENST00000550611 ATP6V1AP38606 617 aa8.23□□□□□ -1.09
LIMA1-206ENST00000550611 TTC24A2A3L6 582 aaPredicted RBP8.22□□□□□ -1.09
LIMA1-206ENST00000550611 WNT7AO00755 349 aa8.22□□□□□ -1.09
LIMA1-206ENST00000550611 HIC1Q14526 733 aa8.22□□□□□ -1.09
LIMA1-206ENST00000550611 DAXXQ9UER7 740 aaPredicted RBP8.22□□□□□ -1.09
LIMA1-206ENST00000550611 FUT2Q10981 343 aa8.21□□□□□ -1.1
LIMA1-206ENST00000550611 SLC27A5Q9Y2P5 690 aa8.21□□□□□ -1.1
LIMA1-206ENST00000550611 ZBTB24O43167 697 aaPredicted RBP8.2□□□□□ -1.1
LIMA1-206ENST00000550611 SMPD1P17405 629 aa8.2□□□□□ -1.1
LIMA1-206ENST00000550611 MSS51Q4VC12 460 aa8.2□□□□□ -1.1
LIMA1-206ENST00000550611 BRICD5Q6PL45 260 aa8.2□□□□□ -1.1
LIMA1-206ENST00000550611 ATP13A2Q9NQ11 1180 aa8.2□□□□□ -1.1
LIMA1-206ENST00000550611 TERTO14746 1132 aaKnown RBP8.19□□□□□ -1.1
LIMA1-206ENST00000550611 RDH13Q8NBN7 331 aa8.19□□□□□ -1.1
LIMA1-206ENST00000550611 SNIP1Q8TAD8 396 aaKnown RBP8.19□□□□□ -1.1
LIMA1-206ENST00000550611 TRIM47Q96LD4 638 aa8.19□□□□□ -1.1
LIMA1-206ENST00000550611 SENP2Q9HC62 589 aa8.19□□□□□ -1.1
LIMA1-206ENST00000550611 GCGRP47871 477 aa8.18□□□□□ -1.1
LIMA1-206ENST00000550611 LCE2CQ5TA81 110 aa8.18□□□□□ -1.1
LIMA1-206ENST00000550611 PRDM9Q9NQV7 894 aa8.18□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 163.1 ms