RNA–Protein interactions for RNA: ENST00000550136.1

PTCH1-220, Transcript of patched 1, humanhuman

TSL 2

Gene PTCH1, Length 2,388 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-220ENST00000550136 EHMT2Q96KQ7 1210 aa12.23□□□□□ -0.45
PTCH1-220ENST00000550136 DIP2CQ9Y2E4 1556 aa12.23□□□□□ -0.45
PTCH1-220ENST00000550136 ZNF335Q9H4Z2 1342 aaPredicted RBP12.23□□□□□ -0.45
PTCH1-220ENST00000550136 CDK11BP21127 795 aaKnown RBP12.23□□□□□ -0.45
PTCH1-220ENST00000550136 MAP7D2Q96T17 732 aa12.23□□□□□ -0.45
PTCH1-220ENST00000550136 RBM42Q9BTD8 480 aaKnown RBP12.23□□□□□ -0.45
PTCH1-220ENST00000550136 CNTLNQ9NXG0 1405 aa12.22□□□□□ -0.45
PTCH1-220ENST00000550136 POLA2Q14181 598 aa12.22□□□□□ -0.45
PTCH1-220ENST00000550136 EFCAB2Q5VUJ9 269 aa12.22□□□□□ -0.45
PTCH1-220ENST00000550136 NPATQ14207 1427 aa12.22□□□□□ -0.45
PTCH1-220ENST00000550136 ZHX1Q9UKY1 873 aaPredicted RBP12.22□□□□□ -0.45
PTCH1-220ENST00000550136 HSPA1LP34931 641 aa12.21□□□□□ -0.45
PTCH1-220ENST00000550136 CNPY4Q8N129 248 aa12.21□□□□□ -0.46
PTCH1-220ENST00000550136 ESF1Q9H501 851 aaKnown RBP12.21□□□□□ -0.46
PTCH1-220ENST00000550136 RGS22Q8NE09 1264 aa12.2□□□□□ -0.46
PTCH1-220ENST00000550136 MYO5CQ9NQX4 1742 aa12.2□□□□□ -0.46
PTCH1-220ENST00000550136 PLA2R1Q13018 1463 aa12.2□□□□□ -0.46
PTCH1-220ENST00000550136 L1TD1Q5T7N2 865 aaKnown RBP12.2□□□□□ -0.46
PTCH1-220ENST00000550136 PKD2Q13563 968 aa12.19□□□□□ -0.46
PTCH1-220ENST00000550136 PPP4R3BQ5MIZ7 849 aa12.19□□□□□ -0.46
PTCH1-220ENST00000550136 DMTNQ08495 405 aa12.19□□□□□ -0.46
PTCH1-220ENST00000550136 NCKAP5LQ9HCH0 1330 aa12.19□□□□□ -0.46
PTCH1-220ENST00000550136 MLH3Q9UHC1 1453 aa12.19□□□□□ -0.46
PTCH1-220ENST00000550136 MROH2AA6NES4 1674 aa12.18□□□□□ -0.46
PTCH1-220ENST00000550136 ABCA6Q8N139 1617 aa12.18□□□□□ -0.46
PTCH1-220ENST00000550136 TCOF1Q13428 1488 aaKnown RBP12.17□□□□□ -0.46
PTCH1-220ENST00000550136 VGLL3A8MV65 326 aa12.17□□□□□ -0.46
PTCH1-220ENST00000550136 ZNF142P52746 1687 aaPredicted RBP12.17□□□□□ -0.46
PTCH1-220ENST00000550136 AFAP1Q8N556 730 aa12.16□□□□□ -0.46
PTCH1-220ENST00000550136 TOM1O60784 492 aa12.15□□□□□ -0.46
PTCH1-220ENST00000550136 IRX3P78415 501 aaPredicted RBP12.15□□□□□ -0.46
PTCH1-220ENST00000550136 KCNG1Q9UIX4 513 aa12.15□□□□□ -0.46
PTCH1-220ENST00000550136 CDK13Q14004 1512 aaKnown RBP12.15□□□□□ -0.46
PTCH1-220ENST00000550136 AMER1Q5JTC6 1135 aaPredicted RBP12.15□□□□□ -0.46
PTCH1-220ENST00000550136 CPS1P31327 1500 aa12.14□□□□□ -0.47
PTCH1-220ENST00000550136 ANP32BQ92688 251 aaKnown RBP12.13□□□□□ -0.47
PTCH1-220ENST00000550136 TAOK2Q9UL54 1235 aa12.13□□□□□ -0.47
PTCH1-220ENST00000550136 MYO3AQ8NEV4 1616 aa12.13□□□□□ -0.47
PTCH1-220ENST00000550136 ARHGAP5Q13017 1502 aa12.12□□□□□ -0.47
PTCH1-220ENST00000550136 PIP4K2BP78356 416 aa12.12□□□□□ -0.47
PTCH1-220ENST00000550136 KIF20AO95235 890 aa12.12□□□□□ -0.47
PTCH1-220ENST00000550136 WWC1Q8IX03 1113 aa12.12□□□□□ -0.47
PTCH1-220ENST00000550136 CEP170BQ9Y4F5 1589 aaPredicted RBP12.12□□□□□ -0.47
PTCH1-220ENST00000550136 ZMYM3Q14202 1370 aa12.11□□□□□ -0.47
PTCH1-220ENST00000550136 TNNT2P45379 298 aaPredicted RBP12.11□□□□□ -0.47
PTCH1-220ENST00000550136 SUPT6HQ7KZ85 1726 aaKnown RBP12.11□□□□□ -0.47
PTCH1-220ENST00000550136 MMP14P50281 582 aa12.11□□□□□ -0.47
PTCH1-220ENST00000550136 KIF14Q15058 1648 aa12.1□□□□□ -0.47
PTCH1-220ENST00000550136 TAF3Q5VWG9 929 aa12.1□□□□□ -0.47
PTCH1-220ENST00000550136 PTPRKQ15262 1439 aa12.09□□□□□ -0.47
PTCH1-220ENST00000550136 ZBTB12Q9Y330 459 aaPredicted RBP12.09□□□□□ -0.47
PTCH1-220ENST00000550136 MTERF4Q7Z6M4 381 aaKnown RBP12.08□□□□□ -0.47
PTCH1-220ENST00000550136 CLGNO14967 610 aa12.08□□□□□ -0.48
PTCH1-220ENST00000550136 ANP32CO43423 234 aa12.08□□□□□ -0.48
PTCH1-220ENST00000550136 KIDINS220Q9ULH0 1771 aa12.08□□□□□ -0.48
PTCH1-220ENST00000550136 SHANK2Q9UPX8 1470 aa12.07□□□□□ -0.48
PTCH1-220ENST00000550136 ABCC1P33527 1531 aa12.07□□□□□ -0.48
PTCH1-220ENST00000550136 PPP1R15AO75807 674 aaPredicted RBP12.07□□□□□ -0.48
PTCH1-220ENST00000550136 ATF5Q9Y2D1 282 aaPredicted RBP12.07□□□□□ -0.48
PTCH1-220ENST00000550136 ITSN2Q9NZM3 1697 aa12.07□□□□□ -0.48
PTCH1-220ENST00000550136 DHX57Q6P158 1386 aaKnown RBP12.07□□□□□ -0.48
PTCH1-220ENST00000550136 ALKQ9UM73 1620 aa12.06□□□□□ -0.48
PTCH1-220ENST00000550136 HNRNPUQ00839 825 aaKnown RBP eCLIP12.06□□□□□ -0.48
PTCH1-220ENST00000550136 TROQ12816 1431 aaPredicted RBP12.06□□□□□ -0.48
PTCH1-220ENST00000550136 TERF1P54274 439 aa12.06□□□□□ -0.48
PTCH1-220ENST00000550136 DDX10Q13206 875 aaKnown RBP12.05□□□□□ -0.48
PTCH1-220ENST00000550136 CDC42BPBQ9Y5S2 1711 aa12.05□□□□□ -0.48
PTCH1-220ENST00000550136 ZSCAN20P17040 1043 aaPredicted RBP12.05□□□□□ -0.48
PTCH1-220ENST00000550136 CLTCQ00610 1675 aaKnown RBP12.05□□□□□ -0.48
PTCH1-220ENST00000550136 GTPBP4Q9BZE4 634 aaKnown RBP12.05□□□□□ -0.48
PTCH1-220ENST00000550136 A2ML1A8K2U0 1454 aa12.04□□□□□ -0.48
PTCH1-220ENST00000550136 FRAT2O75474 233 aaPredicted RBP12.04□□□□□ -0.48
PTCH1-220ENST00000550136 LETM1O95202 739 aaPredicted RBP12.04□□□□□ -0.48
PTCH1-220ENST00000550136 POLR1AO95602 1720 aaPredicted RBP12.04□□□□□ -0.48
PTCH1-220ENST00000550136 CLIP1P30622 1438 aa12.04□□□□□ -0.48
PTCH1-220ENST00000550136 TCERG1O14776 1098 aaKnown RBP12.04□□□□□ -0.48
PTCH1-220ENST00000550136 GRIPAP1Q4V328 841 aa12.03□□□□□ -0.48
PTCH1-220ENST00000550136 RGS17Q9UGC6 210 aaPredicted RBP12.03□□□□□ -0.48
PTCH1-220ENST00000550136 PREX2Q70Z35 1606 aa12.03□□□□□ -0.48
PTCH1-220ENST00000550136 NEURL4Q96JN8 1562 aa12.03□□□□□ -0.48
PTCH1-220ENST00000550136 DNMT1P26358 1616 aaKnown RBP12.03□□□□□ -0.48
PTCH1-220ENST00000550136 ESPNB1AK53 854 aa12.03□□□□□ -0.48
PTCH1-220ENST00000550136 DNTTIP2Q5QJE6 756 aaKnown RBP12.03□□□□□ -0.48
PTCH1-220ENST00000550136 VWDEQ8N2E2 1590 aa12.02□□□□□ -0.49
PTCH1-220ENST00000550136 FAM193AP78312 1265 aa12.02□□□□□ -0.49
PTCH1-220ENST00000550136 KIAA1211Q6ZU35 1233 aa12.02□□□□□ -0.49
PTCH1-220ENST00000550136 BACH2Q9BYV9 841 aa12.02□□□□□ -0.49
PTCH1-220ENST00000550136 PRDM10Q9NQV6 1147 aa12.02□□□□□ -0.49
PTCH1-220ENST00000550136 HDAC5Q9UQL6 1122 aa12.02□□□□□ -0.49
PTCH1-220ENST00000550136 PTMAP06454 111 aaKnown RBP12.01□□□□□ -0.49
PTCH1-220ENST00000550136 PDE4AP27815 886 aa12.01□□□□□ -0.49
PTCH1-220ENST00000550136 RIPK4P57078 832 aa12.01□□□□□ -0.49
PTCH1-220ENST00000550136 SLC20A2Q08357 652 aa12.01□□□□□ -0.49
PTCH1-220ENST00000550136 AXDND1Q5T1B0 1012 aaPredicted RBP12□□□□□ -0.49
PTCH1-220ENST00000550136 TICAM2Q86XR7 235 aa12□□□□□ -0.49
PTCH1-220ENST00000550136 ZNF622Q969S3 477 aaKnown RBP eCLIP12□□□□□ -0.49
PTCH1-220ENST00000550136 FMN1Q68DA7 1419 aa12□□□□□ -0.49
PTCH1-220ENST00000550136 SAMD9LQ8IVG5 1584 aa12□□□□□ -0.49
PTCH1-220ENST00000550136 SLC52A1Q9NWF4 448 aa12□□□□□ -0.49
PTCH1-220ENST00000550136 ZBTB22O15209 634 aa11.99□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 40.4 ms