RNA–Protein interactions for RNA: ENST00000548539.1

VPS29-205, Transcript of VPS29, retromer complex component, humanhuman

TSL 3

Gene VPS29, Length 598 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-205ENST00000548539 BLOC1S3Q6QNY0 202 aa10.27□□□□□ -0.77
VPS29-205ENST00000548539 DGAT1O75907 488 aa10.26□□□□□ -0.77
VPS29-205ENST00000548539 SPRYD7Q5W111 196 aa10.26□□□□□ -0.77
VPS29-205ENST00000548539 MYT1Q01538 1121 aa10.24□□□□□ -0.77
VPS29-205ENST00000548539 ZNF598Q86UK7 904 aaKnown RBP10.24□□□□□ -0.77
VPS29-205ENST00000548539 ANKLE1Q8NAG6 615 aa10.23□□□□□ -0.77
VPS29-205ENST00000548539 EMID1Q96A84 441 aaPredicted RBP10.23□□□□□ -0.77
VPS29-205ENST00000548539 DNAJB2P25686 324 aa10.22□□□□□ -0.77
VPS29-205ENST00000548539 PRR20EP86478 221 aa10.22□□□□□ -0.77
VPS29-205ENST00000548539 PRR20CP86479 221 aa10.22□□□□□ -0.77
VPS29-205ENST00000548539 PRR20DP86480 221 aa10.22□□□□□ -0.77
VPS29-205ENST00000548539 PRR20BP86481 221 aa10.22□□□□□ -0.77
VPS29-205ENST00000548539 PRR20AP86496 221 aa10.22□□□□□ -0.77
VPS29-205ENST00000548539 TLL1O43897 1013 aa10.21□□□□□ -0.77
VPS29-205ENST00000548539 KMT5BQ4FZB7 885 aa10.21□□□□□ -0.77
VPS29-205ENST00000548539 CFAP44Q96MT7 982 aa10.21□□□□□ -0.77
VPS29-205ENST00000548539 PPEF1O14829 653 aaPredicted RBP10.2□□□□□ -0.78
VPS29-205ENST00000548539 PAXIP1Q6ZW49 1069 aaPredicted RBP10.2□□□□□ -0.78
VPS29-205ENST00000548539 RBM46Q8TBY0 533 aaKnown RBP10.2□□□□□ -0.78
VPS29-205ENST00000548539 ACTN4O43707 911 aaKnown RBP10.19□□□□□ -0.78
VPS29-205ENST00000548539 S1PR4O95977 384 aa10.19□□□□□ -0.78
VPS29-205ENST00000548539 ZNF697Q5TEC3 545 aa10.19□□□□□ -0.78
VPS29-205ENST00000548539 LIAT1Q6ZQX7 453 aa10.19□□□□□ -0.78
VPS29-205ENST00000548539 TMEM134Q9H6X4 195 aa10.18□□□□□ -0.78
VPS29-205ENST00000548539 FAM187AA6NFU0 413 aa10.17□□□□□ -0.78
VPS29-205ENST00000548539 POTECB2RU33 542 aa10.17□□□□□ -0.78
VPS29-205ENST00000548539 TNFRSF10AO00220 468 aa10.16□□□□□ -0.78
VPS29-205ENST00000548539 GDF9O60383 454 aa10.15□□□□□ -0.78
VPS29-205ENST00000548539 CFHP08603 1231 aa10.15□□□□□ -0.78
VPS29-205ENST00000548539 ADH1BP00325 375 aa10.14□□□□□ -0.79
VPS29-205ENST00000548539 PTGDRQ13258 359 aa10.14□□□□□ -0.79
VPS29-205ENST00000548539 ADGRG1Q9Y653 693 aa10.14□□□□□ -0.79
VPS29-205ENST00000548539 RCCD1A6NED2 376 aa10.13□□□□□ -0.79
VPS29-205ENST00000548539 NR1I2O75469 434 aa10.13□□□□□ -0.79
VPS29-205ENST00000548539 MLLT3P42568 568 aaPredicted RBP10.13□□□□□ -0.79
VPS29-205ENST00000548539 SLC6A16Q9GZN6 736 aa10.12□□□□□ -0.79
VPS29-205ENST00000548539 FAM161AQ3B820 660 aa10.09□□□□□ -0.79
VPS29-205ENST00000548539 ARHGEF1Q92888 912 aaKnown RBP10.09□□□□□ -0.79
VPS29-205ENST00000548539 ST8SIA5O15466 376 aa10.08□□□□□ -0.8
VPS29-205ENST00000548539 SLC10A3P09131 477 aa10.08□□□□□ -0.8
VPS29-205ENST00000548539 TREML4Q6UXN2 200 aa10.08□□□□□ -0.8
VPS29-205ENST00000548539 AAASQ9NRG9 546 aa10.08□□□□□ -0.8
VPS29-205ENST00000548539 NUTM2FA1L443 756 aa10.07□□□□□ -0.8
VPS29-205ENST00000548539 FOXC1Q12948 553 aa10.07□□□□□ -0.8
VPS29-205ENST00000548539 PLA2G2CQ5R387 149 aa10.07□□□□□ -0.8
VPS29-205ENST00000548539 SCUBE3Q8IX30 993 aa10.07□□□□□ -0.8
VPS29-205ENST00000548539 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP10.05□□□□□ -0.8
VPS29-205ENST00000548539 RSPH4AQ5TD94 716 aa10.05□□□□□ -0.8
VPS29-205ENST00000548539 LMOD2Q6P5Q4 547 aa10.05□□□□□ -0.8
VPS29-205ENST00000548539 SPSB2Q99619 263 aa10.04□□□□□ -0.8
VPS29-205ENST00000548539 PKD2L1Q9P0L9 805 aa10.03□□□□□ -0.8
VPS29-205ENST00000548539 OATP04181 439 aa10.02□□□□□ -0.81
VPS29-205ENST00000548539 PUS10Q3MIT2 529 aaKnown RBP10.02□□□□□ -0.81
VPS29-205ENST00000548539 FCHSD2O94868 740 aa10.01□□□□□ -0.81
VPS29-205ENST00000548539 RPIAP49247 311 aa10□□□□□ -0.81
VPS29-205ENST00000548539 LCE2AQ5TA79 106 aaPredicted RBP10□□□□□ -0.81
VPS29-205ENST00000548539 KCNV2Q8TDN2 545 aa10□□□□□ -0.81
VPS29-205ENST00000548539 CD2BP2O95400 341 aaKnown RBP9.99□□□□□ -0.81
VPS29-205ENST00000548539 PLCB2Q00722 1185 aa9.99□□□□□ -0.81
VPS29-205ENST00000548539 CRIPAKQ8N1N5 446 aa9.99□□□□□ -0.81
VPS29-205ENST00000548539 PXYLP1Q8TE99 480 aa9.98□□□□□ -0.81
VPS29-205ENST00000548539 CYP4X1Q8N118 509 aa9.97□□□□□ -0.81
VPS29-205ENST00000548539 DACH1Q9UI36 760 aa9.97□□□□□ -0.81
VPS29-205ENST00000548539 AXIN1O15169 862 aa9.96□□□□□ -0.82
VPS29-205ENST00000548539 AVPP01185 164 aa9.96□□□□□ -0.82
VPS29-205ENST00000548539 TOR4AQ9NXH8 423 aa9.96□□□□□ -0.82
VPS29-205ENST00000548539 C11orf95C9JLR9 678 aaPredicted RBP9.95□□□□□ -0.82
VPS29-205ENST00000548539 WFS1O76024 890 aa9.95□□□□□ -0.82
VPS29-205ENST00000548539 GMPR2Q9P2T1 348 aaKnown RBP9.95□□□□□ -0.82
VPS29-205ENST00000548539 FCF1Q9Y324 198 aaKnown RBP9.95□□□□□ -0.82
VPS29-205ENST00000548539 CTC1Q2NKJ3 1217 aa9.94□□□□□ -0.82
VPS29-205ENST00000548539 METTL3Q86U44 580 aaKnown RBP9.93□□□□□ -0.82
VPS29-205ENST00000548539 MORN1Q5T089 497 aa9.92□□□□□ -0.82
VPS29-205ENST00000548539 RDH13Q8NBN7 331 aa9.92□□□□□ -0.82
VPS29-205ENST00000548539 FMNL1O95466 1100 aaPredicted RBP9.91□□□□□ -0.82
VPS29-205ENST00000548539 HAP1P54257 671 aaPredicted RBP9.91□□□□□ -0.82
VPS29-205ENST00000548539 TTC24A2A3L6 582 aaPredicted RBP9.9□□□□□ -0.82
VPS29-205ENST00000548539 ATP6V1AP38606 617 aa9.9□□□□□ -0.82
VPS29-205ENST00000548539 HIC1Q14526 733 aa9.9□□□□□ -0.82
VPS29-205ENST00000548539 THAP11Q96EK4 314 aa9.9□□□□□ -0.82
VPS29-205ENST00000548539 TSHZ2Q9NRE2 1034 aa9.9□□□□□ -0.82
VPS29-205ENST00000548539 ZBTB24O43167 697 aaPredicted RBP9.89□□□□□ -0.83
VPS29-205ENST00000548539 SMCPP49901 116 aaPredicted RBP9.89□□□□□ -0.83
VPS29-205ENST00000548539 FUT2Q10981 343 aa9.89□□□□□ -0.83
VPS29-205ENST00000548539 FAM160A2Q8N612 972 aaPredicted RBP9.89□□□□□ -0.83
VPS29-205ENST00000548539 DAXXQ9UER7 740 aaPredicted RBP9.89□□□□□ -0.83
VPS29-205ENST00000548539 SLC27A5Q9Y2P5 690 aa9.88□□□□□ -0.83
VPS29-205ENST00000548539 DDX11L8A8MPP1 907 aa9.87□□□□□ -0.83
VPS29-205ENST00000548539 SEMA3EO15041 775 aa9.87□□□□□ -0.83
VPS29-205ENST00000548539 STK17AQ9UEE5 414 aa9.87□□□□□ -0.83
VPS29-205ENST00000548539 NFX1Q12986 1120 aaKnown RBP9.86□□□□□ -0.83
VPS29-205ENST00000548539 P3H3Q8IVL6 736 aa9.86□□□□□ -0.83
VPS29-205ENST00000548539 INSM1Q01101 510 aaPredicted RBP9.85□□□□□ -0.83
VPS29-205ENST00000548539 SALL2Q9Y467 1007 aaPredicted RBP9.85□□□□□ -0.83
VPS29-205ENST00000548539 PRDM9Q9NQV7 894 aa9.84□□□□□ -0.83
VPS29-205ENST00000548539 WIPF1O43516 503 aa9.83□□□□□ -0.84
VPS29-205ENST00000548539 GCGRP47871 477 aa9.83□□□□□ -0.84
VPS29-205ENST00000548539 BRICD5Q6PL45 260 aa9.83□□□□□ -0.84
VPS29-205ENST00000548539 WNT7AO00755 349 aa9.82□□□□□ -0.84
VPS29-205ENST00000548539 GNPATO15228 680 aa9.82□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms