RNA–Protein interactions for RNA: ENST00000544910.5

VPS50-220, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 2 BASIC

Gene VPS50, Length 5,736 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-220ENST00000544910 APAF1O14727 1248 aa7.37□□□□□ -1.23
VPS50-220ENST00000544910 OSCARQ8IYS5 282 aa7.37□□□□□ -1.23
VPS50-220ENST00000544910 IPO8O15397 1037 aaKnown RBP7.37□□□□□ -1.23
VPS50-220ENST00000544910 CROCC2H7BZ55 1655 aa7.37□□□□□ -1.23
VPS50-220ENST00000544910 CALD1Q05682 793 aaKnown RBP7.37□□□□□ -1.23
VPS50-220ENST00000544910 CDCA7LQ96GN5 454 aa7.37□□□□□ -1.23
VPS50-220ENST00000544910 NCLP19338 710 aaKnown RBP7.36□□□□□ -1.23
VPS50-220ENST00000544910 MLECQ14165 292 aa7.36□□□□□ -1.23
VPS50-220ENST00000544910 FAM161AQ3B820 660 aa7.36□□□□□ -1.23
VPS50-220ENST00000544910 CASC1Q6TDU7 716 aa7.36□□□□□ -1.23
VPS50-220ENST00000544910 ITPRIPQ8IWB1 547 aa7.36□□□□□ -1.23
VPS50-220ENST00000544910 RRP7AQ9Y3A4 280 aaKnown RBP7.36□□□□□ -1.23
VPS50-220ENST00000544910 PLCH2O75038 1416 aa7.36□□□□□ -1.23
VPS50-220ENST00000544910 DISP3Q9P2K9 1392 aa7.36□□□□□ -1.23
VPS50-220ENST00000544910 ADGRL1O94910 1474 aa7.36□□□□□ -1.23
VPS50-220ENST00000544910 ABCC2Q92887 1545 aa7.36□□□□□ -1.23
VPS50-220ENST00000544910 RUNDC1Q96C34 613 aa7.36□□□□□ -1.23
VPS50-220ENST00000544910 SCAF11Q99590 1463 aaKnown RBP7.36□□□□□ -1.23
VPS50-220ENST00000544910 CFAP70Q5T0N1 1121 aa7.36□□□□□ -1.23
VPS50-220ENST00000544910 SMC4Q9NTJ3 1288 aa7.35□□□□□ -1.23
VPS50-220ENST00000544910 NAP1L5Q96NT1 182 aaPredicted RBP7.35□□□□□ -1.23
VPS50-220ENST00000544910 KDM5CP41229 1560 aa7.35□□□□□ -1.23
VPS50-220ENST00000544910 ABCC10Q5T3U5 1492 aa7.35□□□□□ -1.23
VPS50-220ENST00000544910 DHX29Q7Z478 1369 aaKnown RBP7.35□□□□□ -1.23
VPS50-220ENST00000544910 MYO5CQ9NQX4 1742 aa7.34□□□□□ -1.23
VPS50-220ENST00000544910 FANCAO15360 1455 aa7.34□□□□□ -1.23
VPS50-220ENST00000544910 HSCBQ8IWL3 235 aa7.34□□□□□ -1.23
VPS50-220ENST00000544910 ARXQ96QS3 562 aa7.34□□□□□ -1.23
VPS50-220ENST00000544910 GOLGA6L22H0YM25 854 aa7.34□□□□□ -1.24
VPS50-220ENST00000544910 PREX2Q70Z35 1606 aa7.34□□□□□ -1.24
VPS50-220ENST00000544910 C14orf37Q86TY3 774 aa7.33□□□□□ -1.24
VPS50-220ENST00000544910 SAMD9LQ8IVG5 1584 aa7.33□□□□□ -1.24
VPS50-220ENST00000544910 RPGRIP1LQ68CZ1 1315 aa7.32□□□□□ -1.24
VPS50-220ENST00000544910 HSP90AB1P08238 724 aaKnown RBP7.32□□□□□ -1.24
VPS50-220ENST00000544910 PARD3Q8TEW0 1356 aa7.32□□□□□ -1.24
VPS50-220ENST00000544910 NINLQ9Y2I6 1382 aa7.32□□□□□ -1.24
VPS50-220ENST00000544910 ZBTB7CA1YPR0 619 aa7.32□□□□□ -1.24
VPS50-220ENST00000544910 KDM5DQ9BY66 1539 aa7.32□□□□□ -1.24
VPS50-220ENST00000544910 MINK1Q8N4C8 1332 aaPredicted RBP7.32□□□□□ -1.24
VPS50-220ENST00000544910 ZKSCAN2Q63HK3 967 aa7.32□□□□□ -1.24
VPS50-220ENST00000544910 SUGP2Q8IX01 1082 aaKnown RBP eCLIP7.32□□□□□ -1.24
VPS50-220ENST00000544910 USP35Q9P2H5 1018 aa7.32□□□□□ -1.24
VPS50-220ENST00000544910 COL17A1Q9UMD9 1497 aaPredicted RBP7.32□□□□□ -1.24
VPS50-220ENST00000544910 SPATA31E1Q6ZUB1 1445 aa7.32□□□□□ -1.24
VPS50-220ENST00000544910 CDC42BPAQ5VT25 1732 aa7.32□□□□□ -1.24
VPS50-220ENST00000544910 CLUAP1Q96AJ1 413 aa7.32□□□□□ -1.24
VPS50-220ENST00000544910 COG6Q9Y2V7 657 aa7.32□□□□□ -1.24
VPS50-220ENST00000544910 KDM5BQ9UGL1 1544 aa7.31□□□□□ -1.24
VPS50-220ENST00000544910 L1TD1Q5T7N2 865 aaKnown RBP7.31□□□□□ -1.24
VPS50-220ENST00000544910 WDR7Q9Y4E6 1490 aa7.31□□□□□ -1.24
VPS50-220ENST00000544910 HAP1P54257 671 aaPredicted RBP7.31□□□□□ -1.24
VPS50-220ENST00000544910 TMEM132EQ6IEE7 984 aa7.31□□□□□ -1.24
VPS50-220ENST00000544910 A2MP01023 1474 aa7.31□□□□□ -1.24
VPS50-220ENST00000544910 MBD5Q9P267 1494 aa7.31□□□□□ -1.24
VPS50-220ENST00000544910 LMOD3Q0VAK6 560 aa7.31□□□□□ -1.24
VPS50-220ENST00000544910 CFAP44Q96MT7 982 aa7.31□□□□□ -1.24
VPS50-220ENST00000544910 RTN4Q9NQC3 1192 aaKnown RBP7.31□□□□□ -1.24
VPS50-220ENST00000544910 ASXL1Q8IXJ9 1541 aa7.31□□□□□ -1.24
VPS50-220ENST00000544910 AAMPQ13685 434 aa7.31□□□□□ -1.24
VPS50-220ENST00000544910 CABP2Q9NPB3 220 aa7.31□□□□□ -1.24
VPS50-220ENST00000544910 CDK11BP21127 795 aaKnown RBP7.3□□□□□ -1.24
VPS50-220ENST00000544910 NSD3Q9BZ95 1437 aa7.3□□□□□ -1.24
VPS50-220ENST00000544910 TRAPPC8Q9Y2L5 1435 aa7.3□□□□□ -1.24
VPS50-220ENST00000544910 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP7.3□□□□□ -1.24
VPS50-220ENST00000544910 RTEL1-TNFRSF6BF6WH68 1400 aa7.3□□□□□ -1.24
VPS50-220ENST00000544910 DIAPH1O60610 1272 aaKnown RBP7.3□□□□□ -1.24
VPS50-220ENST00000544910 BCL2L13Q9BXK5 485 aa7.3□□□□□ -1.24
VPS50-220ENST00000544910 CHD1O14646 1710 aa7.3□□□□□ -1.24
VPS50-220ENST00000544910 TTC37Q6PGP7 1564 aa7.29□□□□□ -1.24
VPS50-220ENST00000544910 MFAP1P55081 439 aaKnown RBP7.29□□□□□ -1.24
VPS50-220ENST00000544910 SPRYD3Q8NCJ5 442 aa7.29□□□□□ -1.24
VPS50-220ENST00000544910 RTF1Q92541 710 aaKnown RBP7.29□□□□□ -1.24
VPS50-220ENST00000544910 CD109Q6YHK3 1445 aa7.29□□□□□ -1.24
VPS50-220ENST00000544910 SLFN5Q08AF3 891 aa7.28□□□□□ -1.24
VPS50-220ENST00000544910 NKTRP30414 1462 aaKnown RBP7.28□□□□□ -1.24
VPS50-220ENST00000544910 MSH5O43196 834 aa7.28□□□□□ -1.24
VPS50-220ENST00000544910 MTHFSP49914 203 aa7.28□□□□□ -1.24
VPS50-220ENST00000544910 NOS1P29475 1434 aa7.28□□□□□ -1.24
VPS50-220ENST00000544910 DZIP1LQ8IYY4 767 aaKnown RBP7.28□□□□□ -1.24
VPS50-220ENST00000544910 PANK1Q8TE04 598 aa7.28□□□□□ -1.24
VPS50-220ENST00000544910 DDX19BQ9UMR2 479 aa7.28□□□□□ -1.24
VPS50-220ENST00000544910 DENND4BO75064 1496 aaPredicted RBP7.28□□□□□ -1.24
VPS50-220ENST00000544910 COG3Q96JB2 828 aa7.28□□□□□ -1.24
VPS50-220ENST00000544910 SOX12O15370 315 aa7.27□□□□□ -1.25
VPS50-220ENST00000544910 RIPK4P57078 832 aa7.27□□□□□ -1.25
VPS50-220ENST00000544910 ADGRF5Q8IZF2 1346 aa7.27□□□□□ -1.25
VPS50-220ENST00000544910 TCP11L2Q8N4U5 519 aa7.27□□□□□ -1.25
VPS50-220ENST00000544910 ABCF1Q8NE71 845 aaKnown RBP eCLIP7.27□□□□□ -1.25
VPS50-220ENST00000544910 BACH2Q9BYV9 841 aa7.27□□□□□ -1.25
VPS50-220ENST00000544910 ATP7AQ04656 1500 aa7.27□□□□□ -1.25
VPS50-220ENST00000544910 PDE3AQ14432 1141 aa7.27□□□□□ -1.25
VPS50-220ENST00000544910 SLC4A3P48751 1232 aa7.27□□□□□ -1.25
VPS50-220ENST00000544910 SLKQ9H2G2 1235 aaPredicted RBP7.27□□□□□ -1.25
VPS50-220ENST00000544910 POLR1AO95602 1720 aaPredicted RBP7.27□□□□□ -1.25
VPS50-220ENST00000544910 LRPPRCP42704 1394 aaKnown RBP7.27□□□□□ -1.25
VPS50-220ENST00000544910 BCAR3O75815 825 aa7.26□□□□□ -1.25
VPS50-220ENST00000544910 WDR63Q8IWG1 891 aa7.26□□□□□ -1.25
VPS50-220ENST00000544910 SLC12A5Q9H2X9 1139 aa7.26□□□□□ -1.25
VPS50-220ENST00000544910 GGNBP2Q9H3C7 697 aa7.26□□□□□ -1.25
VPS50-220ENST00000544910 ZCCHC11Q5TAX3 1644 aaKnown RBP7.26□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms