RNA–Protein interactions for RNA: ENST00000544349.5

VPS33A-209, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 2

Gene VPS33A, Length 2,114 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-209ENST00000544349 ARID4BQ4LE39 1312 aaPredicted RBP19.86■□□□□ 0.77
VPS33A-209ENST00000544349 MLECQ14165 292 aa19.86■□□□□ 0.77
VPS33A-209ENST00000544349 SLC52A1Q9NWF4 448 aa19.86■□□□□ 0.77
VPS33A-209ENST00000544349 KIAA1210Q9ULL0 1709 aa19.85■□□□□ 0.77
VPS33A-209ENST00000544349 PPLO60437 1756 aa19.84■□□□□ 0.77
VPS33A-209ENST00000544349 ANP32CO43423 234 aa19.84■□□□□ 0.77
VPS33A-209ENST00000544349 IDI1Q13907 227 aa19.84■□□□□ 0.77
VPS33A-209ENST00000544349 NRXN1Q9ULB1 1477 aa19.84■□□□□ 0.77
VPS33A-209ENST00000544349 RPGRIP1LQ68CZ1 1315 aa19.84■□□□□ 0.77
VPS33A-209ENST00000544349 ADGRF5Q8IZF2 1346 aa19.84■□□□□ 0.77
VPS33A-209ENST00000544349 ERVK-7P63135 1459 aa19.83■□□□□ 0.76
VPS33A-209ENST00000544349 CCER2I3L3R5 266 aa19.82■□□□□ 0.76
VPS33A-209ENST00000544349 FBXO31Q5XUX0 539 aaPredicted RBP19.82■□□□□ 0.76
VPS33A-209ENST00000544349 IQGAP1P46940 1657 aa19.8■□□□□ 0.76
VPS33A-209ENST00000544349 CFAP70Q5T0N1 1121 aa19.78■□□□□ 0.76
VPS33A-209ENST00000544349 SPATA31D1Q6ZQQ2 1576 aa19.77■□□□□ 0.76
VPS33A-209ENST00000544349 TMEM131LA2VDJ0 1609 aa19.77■□□□□ 0.76
VPS33A-209ENST00000544349 SCAF11Q99590 1463 aaKnown RBP19.77■□□□□ 0.76
VPS33A-209ENST00000544349 ESF1Q9H501 851 aaKnown RBP19.77■□□□□ 0.76
VPS33A-209ENST00000544349 NEXMIFQ5QGS0 1516 aa19.76■□□□□ 0.75
VPS33A-209ENST00000544349 TESK2Q96S53 571 aa19.76■□□□□ 0.75
VPS33A-209ENST00000544349 MYO5BQ9ULV0 1848 aa19.76■□□□□ 0.75
VPS33A-209ENST00000544349 POLR3GLQ9BT43 218 aa19.76■□□□□ 0.75
VPS33A-209ENST00000544349 PIK3C2GO75747 1445 aa19.76■□□□□ 0.75
VPS33A-209ENST00000544349 ZMYM3Q14202 1370 aa19.75■□□□□ 0.75
VPS33A-209ENST00000544349 VGFO15240 615 aaPredicted RBP19.73■□□□□ 0.75
VPS33A-209ENST00000544349 SETBP1Q9Y6X0 1596 aa19.72■□□□□ 0.75
VPS33A-209ENST00000544349 C14orf93Q9H972 538 aaKnown RBP19.72■□□□□ 0.75
VPS33A-209ENST00000544349 ZFYVE9O95405 1425 aa19.71■□□□□ 0.75
VPS33A-209ENST00000544349 EIF3AQ14152 1382 aaKnown RBP19.7■□□□□ 0.74
VPS33A-209ENST00000544349 DISP3Q9P2K9 1392 aa19.7■□□□□ 0.74
VPS33A-209ENST00000544349 TMF1P82094 1093 aa19.69■□□□□ 0.74
VPS33A-209ENST00000544349 NUTM2DQ5VT03 806 aaPredicted RBP19.69■□□□□ 0.74
VPS33A-209ENST00000544349 STAG3Q9UJ98 1225 aa19.67■□□□□ 0.74
VPS33A-209ENST00000544349 PRKRIP1Q9H875 184 aaPredicted RBP19.66■□□□□ 0.74
VPS33A-209ENST00000544349 ADGRB1O14514 1584 aa19.66■□□□□ 0.74
VPS33A-209ENST00000544349 A2ML1A8K2U0 1454 aa19.65■□□□□ 0.74
VPS33A-209ENST00000544349 AEBP2Q6ZN18 517 aaPredicted RBP19.64■□□□□ 0.74
VPS33A-209ENST00000544349 MYO3AQ8NEV4 1616 aa19.63■□□□□ 0.73
VPS33A-209ENST00000544349 TNRQ92752 1358 aa19.62■□□□□ 0.73
VPS33A-209ENST00000544349 TMEM132EQ6IEE7 984 aa19.61■□□□□ 0.73
VPS33A-209ENST00000544349 SLC24A1O60721 1099 aa19.6■□□□□ 0.73
VPS33A-209ENST00000544349 BCANQ96GW7 911 aa19.6■□□□□ 0.73
VPS33A-209ENST00000544349 CDCA8Q53HL2 280 aa19.59■□□□□ 0.73
VPS33A-209ENST00000544349 TRAK1Q9UPV9 953 aa19.59■□□□□ 0.73
VPS33A-209ENST00000544349 FER1L4A9Z1Z3 1794 aa19.59■□□□□ 0.73
VPS33A-209ENST00000544349 CCDC184Q52MB2 194 aa19.58■□□□□ 0.73
VPS33A-209ENST00000544349 RIMS2Q9UQ26 1411 aa19.58■□□□□ 0.72
VPS33A-209ENST00000544349 FKBP8Q14318 412 aa19.58■□□□□ 0.72
VPS33A-209ENST00000544349 SBNO2Q9Y2G9 1366 aa19.57■□□□□ 0.72
VPS33A-209ENST00000544349 CENPJQ9HC77 1338 aaPredicted RBP19.57■□□□□ 0.72
VPS33A-209ENST00000544349 C3P01024 1663 aa19.57■□□□□ 0.72
VPS33A-209ENST00000544349 KDM5AP29375 1690 aaKnown RBP19.56■□□□□ 0.72
VPS33A-209ENST00000544349 CEBPAP49715 358 aaPredicted RBP19.55■□□□□ 0.72
VPS33A-209ENST00000544349 ASXL1Q8IXJ9 1541 aa19.55■□□□□ 0.72
VPS33A-209ENST00000544349 PER1O15534 1290 aaPredicted RBP19.54■□□□□ 0.72
VPS33A-209ENST00000544349 ALKQ9UM73 1620 aa19.54■□□□□ 0.72
VPS33A-209ENST00000544349 ARHGEF28Q8N1W1 1705 aaKnown RBP19.54■□□□□ 0.72
VPS33A-209ENST00000544349 UBR1Q8IWV7 1749 aa19.53■□□□□ 0.72
VPS33A-209ENST00000544349 HNRNPUQ00839 825 aaKnown RBP eCLIP19.53■□□□□ 0.72
VPS33A-209ENST00000544349 QRICH2Q9H0J4 1663 aa19.53■□□□□ 0.72
VPS33A-209ENST00000544349 ABCF1Q8NE71 845 aaKnown RBP eCLIP19.52■□□□□ 0.72
VPS33A-209ENST00000544349 SENP3Q9H4L4 574 aaPredicted RBP19.52■□□□□ 0.72
VPS33A-209ENST00000544349 PANK3Q9H999 370 aa19.52■□□□□ 0.72
VPS33A-209ENST00000544349 NLRP1Q9C000 1473 aa19.52■□□□□ 0.71
VPS33A-209ENST00000544349 CNGB1Q14028 1251 aaPredicted RBP19.5■□□□□ 0.71
VPS33A-209ENST00000544349 MYOM1P52179 1685 aa19.5■□□□□ 0.71
VPS33A-209ENST00000544349 HDGFP51858 240 aaKnown RBP19.49■□□□□ 0.71
VPS33A-209ENST00000544349 KTN1Q86UP2 1357 aaKnown RBP19.49■□□□□ 0.71
VPS33A-209ENST00000544349 TMEM2Q9UHN6 1383 aa19.48■□□□□ 0.71
VPS33A-209ENST00000544349 YTHDC2Q9H6S0 1430 aaKnown RBP19.48■□□□□ 0.71
VPS33A-209ENST00000544349 SETD1AO15047 1707 aaKnown RBP19.47■□□□□ 0.71
VPS33A-209ENST00000544349 RALBP1Q15311 655 aa19.47■□□□□ 0.71
VPS33A-209ENST00000544349 MRS2Q9HD23 443 aa19.47■□□□□ 0.71
VPS33A-209ENST00000544349 PTPRMP28827 1452 aa19.46■□□□□ 0.71
VPS33A-209ENST00000544349 TSHZ2Q9NRE2 1034 aa19.46■□□□□ 0.71
VPS33A-209ENST00000544349 STK26Q9P289 416 aa19.46■□□□□ 0.71
VPS33A-209ENST00000544349 NRXN3Q9Y4C0 1643 aa19.46■□□□□ 0.71
VPS33A-209ENST00000544349 NEFLP07196 543 aa19.45■□□□□ 0.7
VPS33A-209ENST00000544349 PLPPR3Q6T4P5 718 aa19.45■□□□□ 0.7
VPS33A-209ENST00000544349 PARD3Q8TEW0 1356 aa19.43■□□□□ 0.7
VPS33A-209ENST00000544349 RIMS1Q86UR5 1692 aaKnown RBP19.42■□□□□ 0.7
VPS33A-209ENST00000544349 MYBBP1AQ9BQG0 1328 aaKnown RBP19.42■□□□□ 0.7
VPS33A-209ENST00000544349 ADAMTSL3P82987 1691 aa19.41■□□□□ 0.7
VPS33A-209ENST00000544349 PUS7Q96PZ0 661 aaKnown RBP19.41■□□□□ 0.7
VPS33A-209ENST00000544349 EVC2Q86UK5 1308 aa19.41■□□□□ 0.7
VPS33A-209ENST00000544349 KNSTRNQ9Y448 316 aa19.4■□□□□ 0.7
VPS33A-209ENST00000544349 TULP4Q9NRJ4 1543 aa19.4■□□□□ 0.7
VPS33A-209ENST00000544349 LRPPRCP42704 1394 aaKnown RBP19.4■□□□□ 0.7
VPS33A-209ENST00000544349 PRAM1Q96QH2 718 aa19.4■□□□□ 0.7
VPS33A-209ENST00000544349 DLC1Q96QB1 1528 aa19.39■□□□□ 0.7
VPS33A-209ENST00000544349 SAFB2Q14151 953 aaKnown RBP eCLIP19.39■□□□□ 0.69
VPS33A-209ENST00000544349 FAM9BQ8IZU0 186 aa19.39■□□□□ 0.69
VPS33A-209ENST00000544349 CC2D1BQ5T0F9 858 aaKnown RBP19.39■□□□□ 0.69
VPS33A-209ENST00000544349 LTKP29376 864 aa19.38■□□□□ 0.69
VPS33A-209ENST00000544349 POGKQ9P215 609 aa19.38■□□□□ 0.69
VPS33A-209ENST00000544349 SLIT1O75093 1534 aa19.38■□□□□ 0.69
VPS33A-209ENST00000544349 ARHGAP23Q9P227 1491 aa19.38■□□□□ 0.69
VPS33A-209ENST00000544349 METP08581 1390 aa19.37■□□□□ 0.69
VPS33A-209ENST00000544349 ABCC11Q96J66 1382 aa19.37■□□□□ 0.69
Retrieved 100 of 20,778 RNA–protein pairs in 73.3 ms