RNA–Protein interactions for RNA: ENST00000542813.2

SFSWAP-211, Transcript of splicing factor SWAP, humanhuman

TSL 3

Gene SFSWAP, Length 373 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-211ENST00000542813 C3orf80F5H4A9 247 aa7.12□□□□□ -1.27
SFSWAP-211ENST00000542813 HDGFP51858 240 aaKnown RBP7.12□□□□□ -1.27
SFSWAP-211ENST00000542813 NUDT18Q6ZVK8 323 aa7.12□□□□□ -1.27
SFSWAP-211ENST00000542813 TJAP1Q5JTD0 557 aa7.11□□□□□ -1.27
SFSWAP-211ENST00000542813 IL27Q8NEV9 243 aa7.11□□□□□ -1.27
SFSWAP-211ENST00000542813 GPIHBP1Q8IV16 184 aa7.1□□□□□ -1.27
SFSWAP-211ENST00000542813 TTC13Q8NBP0 860 aa7.1□□□□□ -1.27
SFSWAP-211ENST00000542813 KDM4CQ9H3R0 1056 aa7.1□□□□□ -1.27
SFSWAP-211ENST00000542813 IL21Q9HBE4 155 aa7.1□□□□□ -1.27
SFSWAP-211ENST00000542813 RNF40O75150 1001 aa7.09□□□□□ -1.27
SFSWAP-211ENST00000542813 KRI1Q8N9T8 703 aaKnown RBP7.09□□□□□ -1.27
SFSWAP-211ENST00000542813 NECTIN2Q92692 538 aa7.09□□□□□ -1.27
SFSWAP-211ENST00000542813 MTRQ99707 1265 aa7.09□□□□□ -1.27
SFSWAP-211ENST00000542813 RBM26Q5T8P6 1007 aaKnown RBP7.08□□□□□ -1.28
SFSWAP-211ENST00000542813 PADI6Q6TGC4 694 aa7.08□□□□□ -1.28
SFSWAP-211ENST00000542813 Q6ZNB5 142 aa7.08□□□□□ -1.28
SFSWAP-211ENST00000542813 NPDC1Q9NQX5 325 aaPredicted RBP7.08□□□□□ -1.28
SFSWAP-211ENST00000542813 TRIM26Q12899 539 aaPredicted RBP7.07□□□□□ -1.28
SFSWAP-211ENST00000542813 APLP1P51693 650 aa7.06□□□□□ -1.28
SFSWAP-211ENST00000542813 LAPTM4AQ15012 233 aa7.06□□□□□ -1.28
SFSWAP-211ENST00000542813 SLF2Q8IX21 1173 aa7.06□□□□□ -1.28
SFSWAP-211ENST00000542813 TRIM66O15016 1216 aa7.05□□□□□ -1.28
SFSWAP-211ENST00000542813 MLLT3P42568 568 aaPredicted RBP7.05□□□□□ -1.28
SFSWAP-211ENST00000542813 PDE4DQ08499 809 aa7.05□□□□□ -1.28
SFSWAP-211ENST00000542813 SWT1Q5T5J6 900 aaKnown RBP7.05□□□□□ -1.28
SFSWAP-211ENST00000542813 PPP1R18Q6NYC8 613 aa7.05□□□□□ -1.28
SFSWAP-211ENST00000542813 SLC4A3P48751 1232 aa7.04□□□□□ -1.28
SFSWAP-211ENST00000542813 ZNF516Q92618 1163 aa7.04□□□□□ -1.28
SFSWAP-211ENST00000542813 ARID3AQ99856 593 aa7.04□□□□□ -1.28
SFSWAP-211ENST00000542813 EYA1Q99502 592 aa7.03□□□□□ -1.28
SFSWAP-211ENST00000542813 PRKD2Q9BZL6 878 aa7.03□□□□□ -1.28
SFSWAP-211ENST00000542813 EIF4ENIF1Q9NRA8 985 aaKnown RBP7.02□□□□□ -1.29
SFSWAP-211ENST00000542813 V9GY48 417 aaPredicted RBP7.02□□□□□ -1.29
SFSWAP-211ENST00000542813 GFRA3O60609 400 aa7.01□□□□□ -1.29
SFSWAP-211ENST00000542813 PRR14Q9BWN1 585 aa7.01□□□□□ -1.29
SFSWAP-211ENST00000542813 GGCXP38435 758 aa7□□□□□ -1.29
SFSWAP-211ENST00000542813 PTGDRQ13258 359 aa7□□□□□ -1.29
SFSWAP-211ENST00000542813 C1orf115Q9H7X2 142 aa7□□□□□ -1.29
SFSWAP-211ENST00000542813 HRCP23327 699 aa6.99□□□□□ -1.29
SFSWAP-211ENST00000542813 COPS2P61201 443 aa6.99□□□□□ -1.29
SFSWAP-211ENST00000542813 NKX2-3Q8TAU0 364 aa6.99□□□□□ -1.29
SFSWAP-211ENST00000542813 NRG2O14511 850 aaPredicted RBP6.98□□□□□ -1.29
SFSWAP-211ENST00000542813 ZPR1O75312 459 aa6.98□□□□□ -1.29
SFSWAP-211ENST00000542813 DNAJB2P25686 324 aa6.98□□□□□ -1.29
SFSWAP-211ENST00000542813 RBM46Q8TBY0 533 aaKnown RBP6.98□□□□□ -1.29
SFSWAP-211ENST00000542813 FAM117AQ9C073 453 aa6.98□□□□□ -1.29
SFSWAP-211ENST00000542813 TMUB1Q9BVT8 246 aa6.97□□□□□ -1.29
SFSWAP-211ENST00000542813 PCDHB3Q9Y5E6 796 aa6.97□□□□□ -1.29
SFSWAP-211ENST00000542813 LCE2BO14633 110 aa6.96□□□□□ -1.3
SFSWAP-211ENST00000542813 FLIIQ13045 1269 aa6.96□□□□□ -1.3
SFSWAP-211ENST00000542813 TRAF7Q6Q0C0 670 aa6.96□□□□□ -1.3
SFSWAP-211ENST00000542813 NPM2Q86SE8 214 aaKnown RBP6.96□□□□□ -1.3
SFSWAP-211ENST00000542813 DDRGK1Q96HY6 314 aa6.96□□□□□ -1.3
SFSWAP-211ENST00000542813 ADGRG1Q9Y653 693 aa6.96□□□□□ -1.3
SFSWAP-211ENST00000542813 NUTM2FA1L443 756 aa6.95□□□□□ -1.3
SFSWAP-211ENST00000542813 ARID3CA6NKF2 412 aa6.95□□□□□ -1.3
SFSWAP-211ENST00000542813 APBB1O00213 710 aa6.95□□□□□ -1.3
SFSWAP-211ENST00000542813 TMEM134Q9H6X4 195 aa6.95□□□□□ -1.3
SFSWAP-211ENST00000542813 PLEKHG3A1L390 1219 aa6.94□□□□□ -1.3
SFSWAP-211ENST00000542813 GPR37O15354 613 aa6.94□□□□□ -1.3
SFSWAP-211ENST00000542813 RCCD1A6NED2 376 aa6.93□□□□□ -1.3
SFSWAP-211ENST00000542813 FCHSD2O94868 740 aa6.93□□□□□ -1.3
SFSWAP-211ENST00000542813 KMT5BQ4FZB7 885 aa6.93□□□□□ -1.3
SFSWAP-211ENST00000542813 BLOC1S3Q6QNY0 202 aa6.93□□□□□ -1.3
SFSWAP-211ENST00000542813 PDZRN3Q9UPQ7 1066 aa6.92□□□□□ -1.3
SFSWAP-211ENST00000542813 MINK1Q8N4C8 1332 aaPredicted RBP6.92□□□□□ -1.3
SFSWAP-211ENST00000542813 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP6.91□□□□□ -1.3
SFSWAP-211ENST00000542813 ACTN4O43707 911 aaKnown RBP6.91□□□□□ -1.3
SFSWAP-211ENST00000542813 MAP2K5Q13163 448 aa6.91□□□□□ -1.3
SFSWAP-211ENST00000542813 CCDC102AQ96A19 550 aa6.91□□□□□ -1.3
SFSWAP-211ENST00000542813 RNF223E7ERA6 249 aa6.9□□□□□ -1.3
SFSWAP-211ENST00000542813 CFHP08603 1231 aa6.9□□□□□ -1.3
SFSWAP-211ENST00000542813 PDIA4P13667 645 aaKnown RBP6.9□□□□□ -1.3
SFSWAP-211ENST00000542813 AMHR2Q16671 573 aa6.9□□□□□ -1.3
SFSWAP-211ENST00000542813 FAM161AQ3B820 660 aa6.9□□□□□ -1.3
SFSWAP-211ENST00000542813 TLL1O43897 1013 aa6.89□□□□□ -1.31
SFSWAP-211ENST00000542813 OATP04181 439 aa6.89□□□□□ -1.31
SFSWAP-211ENST00000542813 PARP9Q8IXQ6 854 aa6.89□□□□□ -1.31
SFSWAP-211ENST00000542813 ZBTB7CA1YPR0 619 aa6.88□□□□□ -1.31
SFSWAP-211ENST00000542813 IRF6O14896 467 aa6.88□□□□□ -1.31
SFSWAP-211ENST00000542813 SLC19A1P41440 591 aa6.88□□□□□ -1.31
SFSWAP-211ENST00000542813 ANKLE1Q8NAG6 615 aa6.88□□□□□ -1.31
SFSWAP-211ENST00000542813 PXYLP1Q8TE99 480 aa6.88□□□□□ -1.31
SFSWAP-211ENST00000542813 SLC10A3P09131 477 aa6.87□□□□□ -1.31
SFSWAP-211ENST00000542813 HIC1Q14526 733 aa6.87□□□□□ -1.31
SFSWAP-211ENST00000542813 GOPCQ9HD26 462 aa6.87□□□□□ -1.31
SFSWAP-211ENST00000542813 A6NJR5 290 aa6.86□□□□□ -1.31
SFSWAP-211ENST00000542813 NR1I2O75469 434 aa6.86□□□□□ -1.31
SFSWAP-211ENST00000542813 S1PR4O95977 384 aa6.86□□□□□ -1.31
SFSWAP-211ENST00000542813 ADH1BP00325 375 aa6.86□□□□□ -1.31
SFSWAP-211ENST00000542813 CCDC82Q8N4S0 544 aa6.86□□□□□ -1.31
SFSWAP-211ENST00000542813 GNPATO15228 680 aa6.85□□□□□ -1.31
SFSWAP-211ENST00000542813 TTLL12Q14166 644 aaPredicted RBP6.85□□□□□ -1.31
SFSWAP-211ENST00000542813 RSPH4AQ5TD94 716 aa6.85□□□□□ -1.31
SFSWAP-211ENST00000542813 SPRYD7Q5W111 196 aa6.85□□□□□ -1.31
SFSWAP-211ENST00000542813 TRIM67Q6ZTA4 783 aa6.85□□□□□ -1.31
SFSWAP-211ENST00000542813 METTL3Q86U44 580 aaKnown RBP6.85□□□□□ -1.31
SFSWAP-211ENST00000542813 EMID1Q96A84 441 aaPredicted RBP6.85□□□□□ -1.31
SFSWAP-211ENST00000542813 CCDC9Q9Y3X0 531 aaKnown RBP6.85□□□□□ -1.31
SFSWAP-211ENST00000542813 TRAK2O60296 914 aa6.84□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 11.2 ms