RNA–Protein interactions for RNA: ENST00000542274.5

CDH3-203, Transcript of cadherin 3, humanhuman

TSL 2

Gene CDH3, Length 2,746 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3-203ENST00000542274 DIP2BQ9P265 1576 aa14.75□□□□□ -0.05
CDH3-203ENST00000542274 RTEL1-TNFRSF6BF6WH68 1400 aa14.74□□□□□ -0.05
CDH3-203ENST00000542274 ERBINQ96RT1 1412 aa14.74□□□□□ -0.05
CDH3-203ENST00000542274 ZNF518AQ6AHZ1 1483 aa14.73□□□□□ -0.05
CDH3-203ENST00000542274 CNPY4Q8N129 248 aa14.73□□□□□ -0.05
CDH3-203ENST00000542274 POGZQ7Z3K3 1410 aa14.73□□□□□ -0.05
CDH3-203ENST00000542274 PLCD3Q8N3E9 789 aa14.73□□□□□ -0.05
CDH3-203ENST00000542274 KDM2AQ9Y2K7 1162 aa14.72□□□□□ -0.05
CDH3-203ENST00000542274 IQGAP3Q86VI3 1631 aa14.72□□□□□ -0.05
CDH3-203ENST00000542274 DNAJC5Q9H3Z4 198 aa14.72□□□□□ -0.05
CDH3-203ENST00000542274 KIF3BO15066 747 aa14.71□□□□□ -0.05
CDH3-203ENST00000542274 GLI2P10070 1586 aa14.7□□□□□ -0.06
CDH3-203ENST00000542274 NEO1Q92859 1461 aa14.7□□□□□ -0.06
CDH3-203ENST00000542274 KDM5CP41229 1560 aa14.69□□□□□ -0.06
CDH3-203ENST00000542274 MAGI2Q86UL8 1455 aa14.69□□□□□ -0.06
CDH3-203ENST00000542274 HECW2Q9P2P5 1572 aa14.68□□□□□ -0.06
CDH3-203ENST00000542274 POLR3GLQ9BT43 218 aa14.68□□□□□ -0.06
CDH3-203ENST00000542274 PPRC1Q5VV67 1664 aaKnown RBP14.68□□□□□ -0.06
CDH3-203ENST00000542274 KIF13AQ9H1H9 1805 aa14.67□□□□□ -0.06
CDH3-203ENST00000542274 ABCA6Q8N139 1617 aa14.67□□□□□ -0.06
CDH3-203ENST00000542274 RICTORQ6R327 1708 aa14.67□□□□□ -0.06
CDH3-203ENST00000542274 DHX29Q7Z478 1369 aaKnown RBP14.67□□□□□ -0.06
CDH3-203ENST00000542274 CCDC184Q52MB2 194 aa14.67□□□□□ -0.06
CDH3-203ENST00000542274 CCDC7Q96M83 1385 aa14.66□□□□□ -0.06
CDH3-203ENST00000542274 SPATA31E1Q6ZUB1 1445 aa14.66□□□□□ -0.06
CDH3-203ENST00000542274 RGL3Q3MIN7 710 aa14.66□□□□□ -0.06
CDH3-203ENST00000542274 RNF216Q9NWF9 866 aaPredicted RBP14.66□□□□□ -0.06
CDH3-203ENST00000542274 KIF7Q2M1P5 1343 aa14.66□□□□□ -0.06
CDH3-203ENST00000542274 KCNG1Q9UIX4 513 aa14.65□□□□□ -0.06
CDH3-203ENST00000542274 PLA2R1Q13018 1463 aa14.65□□□□□ -0.06
CDH3-203ENST00000542274 DEPDC5O75140 1603 aa14.65□□□□□ -0.06
CDH3-203ENST00000542274 DCAF11Q8TEB1 546 aa14.65□□□□□ -0.06
CDH3-203ENST00000542274 A2MP01023 1474 aa14.65□□□□□ -0.06
CDH3-203ENST00000542274 E9PCH4 1651 aa14.65□□□□□ -0.07
CDH3-203ENST00000542274 CCER2I3L3R5 266 aa14.65□□□□□ -0.07
CDH3-203ENST00000542274 ZNF830Q96NB3 372 aaPredicted RBP14.65□□□□□ -0.07
CDH3-203ENST00000542274 FRMPD1Q5SYB0 1578 aa14.64□□□□□ -0.07
CDH3-203ENST00000542274 MROH1Q8NDA8 1641 aa14.64□□□□□ -0.07
CDH3-203ENST00000542274 MLH3Q9UHC1 1453 aa14.64□□□□□ -0.07
CDH3-203ENST00000542274 PRDM10Q9NQV6 1147 aa14.63□□□□□ -0.07
CDH3-203ENST00000542274 USP35Q9P2H5 1018 aa14.63□□□□□ -0.07
CDH3-203ENST00000542274 YEATS2Q9ULM3 1422 aa14.63□□□□□ -0.07
CDH3-203ENST00000542274 EIF2AK4Q9P2K8 1649 aaKnown RBP14.62□□□□□ -0.07
CDH3-203ENST00000542274 CFAP65Q6ZU64 1925 aaKnown RBP14.62□□□□□ -0.07
CDH3-203ENST00000542274 USP47Q96K76 1375 aa14.62□□□□□ -0.07
CDH3-203ENST00000542274 CCDC144AA2RUR9 1427 aa14.62□□□□□ -0.07
CDH3-203ENST00000542274 GGT6Q6P531 493 aa14.62□□□□□ -0.07
CDH3-203ENST00000542274 CEP152O94986 1710 aa14.61□□□□□ -0.07
CDH3-203ENST00000542274 CNTLNQ9NXG0 1405 aa14.61□□□□□ -0.07
CDH3-203ENST00000542274 DIP2CQ9Y2E4 1556 aa14.61□□□□□ -0.07
CDH3-203ENST00000542274 NCLP19338 710 aaKnown RBP14.61□□□□□ -0.07
CDH3-203ENST00000542274 PPM1GO15355 546 aaPredicted RBP14.6□□□□□ -0.07
CDH3-203ENST00000542274 PRDM15P57071 1507 aaPredicted RBP14.6□□□□□ -0.07
CDH3-203ENST00000542274 KANK1Q14678 1352 aa14.6□□□□□ -0.07
CDH3-203ENST00000542274 WWC1Q8IX03 1113 aa14.59□□□□□ -0.07
CDH3-203ENST00000542274 CARD11Q9BXL7 1154 aa14.59□□□□□ -0.07
CDH3-203ENST00000542274 BCORL1Q5H9F3 1711 aa14.59□□□□□ -0.07
CDH3-203ENST00000542274 TET3O43151 1660 aa14.59□□□□□ -0.07
CDH3-203ENST00000542274 CENPJQ9HC77 1338 aaPredicted RBP14.59□□□□□ -0.07
CDH3-203ENST00000542274 ZBTB47Q9UFB7 747 aaPredicted RBP14.58□□□□□ -0.07
CDH3-203ENST00000542274 VWDEQ8N2E2 1590 aa14.58□□□□□ -0.08
CDH3-203ENST00000542274 GSE1Q14687 1217 aa14.57□□□□□ -0.08
CDH3-203ENST00000542274 ATP10AO60312 1499 aa14.57□□□□□ -0.08
CDH3-203ENST00000542274 SPHKAPQ2M3C7 1700 aa14.57□□□□□ -0.08
CDH3-203ENST00000542274 IPO9Q96P70 1041 aaKnown RBP14.57□□□□□ -0.08
CDH3-203ENST00000542274 PRKRIP1Q9H875 184 aaPredicted RBP14.56□□□□□ -0.08
CDH3-203ENST00000542274 RNF17Q9BXT8 1623 aaKnown RBP14.56□□□□□ -0.08
CDH3-203ENST00000542274 ST20-MTHFSA0A0A6YYL1 179 aa14.56□□□□□ -0.08
CDH3-203ENST00000542274 VGLL3A8MV65 326 aa14.56□□□□□ -0.08
CDH3-203ENST00000542274 NBPF1Q3BBV0 1214 aa14.56□□□□□ -0.08
CDH3-203ENST00000542274 UGGT1Q9NYU2 1555 aa14.55□□□□□ -0.08
CDH3-203ENST00000542274 COL17A1Q9UMD9 1497 aaPredicted RBP14.55□□□□□ -0.08
CDH3-203ENST00000542274 HNRNPUQ00839 825 aaKnown RBP eCLIP14.55□□□□□ -0.08
CDH3-203ENST00000542274 UHRF1BP1Q6BDS2 1440 aa14.54□□□□□ -0.08
CDH3-203ENST00000542274 CLTCL1P53675 1640 aa14.54□□□□□ -0.08
CDH3-203ENST00000542274 TMEM51Q9NW97 253 aa14.53□□□□□ -0.08
CDH3-203ENST00000542274 RALGAPBQ86X10 1494 aa14.53□□□□□ -0.08
CDH3-203ENST00000542274 SENP3-EIF4A1A0A087X0R7 540 aa14.53□□□□□ -0.08
CDH3-203ENST00000542274 KCNA4P22459 653 aa14.53□□□□□ -0.08
CDH3-203ENST00000542274 FAM9BQ8IZU0 186 aa14.53□□□□□ -0.08
CDH3-203ENST00000542274 EFCAB6Q5THR3 1501 aa14.52□□□□□ -0.08
CDH3-203ENST00000542274 ARID4BQ4LE39 1312 aaPredicted RBP14.52□□□□□ -0.08
CDH3-203ENST00000542274 CFAP44Q96MT7 982 aa14.52□□□□□ -0.09
CDH3-203ENST00000542274 RRAGDQ9NQL2 400 aaPredicted RBP14.52□□□□□ -0.09
CDH3-203ENST00000542274 ROCK2O75116 1388 aaKnown RBP14.52□□□□□ -0.09
CDH3-203ENST00000542274 TRPM2O94759 1503 aa14.52□□□□□ -0.09
CDH3-203ENST00000542274 PDCL3Q9H2J4 239 aa14.51□□□□□ -0.09
CDH3-203ENST00000542274 ZMYM4Q5VZL5 1548 aa14.51□□□□□ -0.09
CDH3-203ENST00000542274 MRS2Q9HD23 443 aa14.5□□□□□ -0.09
CDH3-203ENST00000542274 ANP32AP39687 249 aaKnown RBP14.5□□□□□ -0.09
CDH3-203ENST00000542274 SIGLEC1Q9BZZ2 1709 aa14.49□□□□□ -0.09
CDH3-203ENST00000542274 PTPRTO14522 1441 aa14.49□□□□□ -0.09
CDH3-203ENST00000542274 ABCC3O15438 1527 aa14.49□□□□□ -0.09
CDH3-203ENST00000542274 PRAG1Q86YV5 1406 aa14.48□□□□□ -0.09
CDH3-203ENST00000542274 IGSF3O75054 1194 aa14.48□□□□□ -0.09
CDH3-203ENST00000542274 NPATQ14207 1427 aa14.48□□□□□ -0.09
CDH3-203ENST00000542274 RGS22Q8NE09 1264 aa14.48□□□□□ -0.09
CDH3-203ENST00000542274 TRHP20396 242 aaPredicted RBP14.47□□□□□ -0.09
CDH3-203ENST00000542274 MLECQ14165 292 aa14.47□□□□□ -0.09
CDH3-203ENST00000542274 ZHX1Q9UKY1 873 aaPredicted RBP14.47□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 11.5 ms