RNA–Protein interactions for RNA: ENST00000541903.6

VPS53-205, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS53, Length 494 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-205ENST00000541903 LAMC1P11047 1609 aa10.37□□□□□ -0.75
VPS53-205ENST00000541903 NEXMIFQ5QGS0 1516 aa10.37□□□□□ -0.75
VPS53-205ENST00000541903 VGFO15240 615 aaPredicted RBP10.36□□□□□ -0.75
VPS53-205ENST00000541903 PPLO60437 1756 aa10.36□□□□□ -0.75
VPS53-205ENST00000541903 A2ML1A8K2U0 1454 aa10.36□□□□□ -0.75
VPS53-205ENST00000541903 NLRP1Q9C000 1473 aa10.36□□□□□ -0.75
VPS53-205ENST00000541903 C3P01024 1663 aa10.35□□□□□ -0.75
VPS53-205ENST00000541903 PIK3C2GO75747 1445 aa10.35□□□□□ -0.75
VPS53-205ENST00000541903 ZFYVE9O95405 1425 aa10.35□□□□□ -0.75
VPS53-205ENST00000541903 CEBPAP49715 358 aaPredicted RBP10.35□□□□□ -0.75
VPS53-205ENST00000541903 NBPF1Q3BBV0 1214 aa10.35□□□□□ -0.75
VPS53-205ENST00000541903 PLPPR3Q6T4P5 718 aa10.35□□□□□ -0.75
VPS53-205ENST00000541903 KIAA1210Q9ULL0 1709 aa10.35□□□□□ -0.75
VPS53-205ENST00000541903 ADAMTSL3P82987 1691 aa10.34□□□□□ -0.75
VPS53-205ENST00000541903 RIMS1Q86UR5 1692 aaKnown RBP10.34□□□□□ -0.75
VPS53-205ENST00000541903 CFAP70Q5T0N1 1121 aa10.33□□□□□ -0.76
VPS53-205ENST00000541903 NUTM2DQ5VT03 806 aaPredicted RBP10.33□□□□□ -0.76
VPS53-205ENST00000541903 EIF3AQ14152 1382 aaKnown RBP10.33□□□□□ -0.76
VPS53-205ENST00000541903 SCAF11Q99590 1463 aaKnown RBP10.33□□□□□ -0.76
VPS53-205ENST00000541903 RIMS2Q9UQ26 1411 aa10.33□□□□□ -0.76
VPS53-205ENST00000541903 ABCF1Q8NE71 845 aaKnown RBP eCLIP10.32□□□□□ -0.76
VPS53-205ENST00000541903 C14orf93Q9H972 538 aaKnown RBP10.32□□□□□ -0.76
VPS53-205ENST00000541903 KDM5AP29375 1690 aaKnown RBP10.31□□□□□ -0.76
VPS53-205ENST00000541903 SETBP1Q9Y6X0 1596 aa10.31□□□□□ -0.76
VPS53-205ENST00000541903 HDGFP51858 240 aaKnown RBP10.31□□□□□ -0.76
VPS53-205ENST00000541903 MYO3AQ8NEV4 1616 aa10.3□□□□□ -0.76
VPS53-205ENST00000541903 CCDC7Q96M83 1385 aa10.3□□□□□ -0.76
VPS53-205ENST00000541903 TMEM2Q9UHN6 1383 aa10.3□□□□□ -0.76
VPS53-205ENST00000541903 ST20-MTHFSA0A0A6YYL1 179 aa10.3□□□□□ -0.76
VPS53-205ENST00000541903 MYO5BQ9ULV0 1848 aa10.3□□□□□ -0.76
VPS53-205ENST00000541903 WASHC2AQ641Q2 1341 aa10.3□□□□□ -0.76
VPS53-205ENST00000541903 IQGAP1P46940 1657 aa10.29□□□□□ -0.76
VPS53-205ENST00000541903 DDX10Q13206 875 aaKnown RBP10.29□□□□□ -0.76
VPS53-205ENST00000541903 UBR1Q8IWV7 1749 aa10.29□□□□□ -0.76
VPS53-205ENST00000541903 ADGRB1O14514 1584 aa10.28□□□□□ -0.76
VPS53-205ENST00000541903 AEBP2Q6ZN18 517 aaPredicted RBP10.28□□□□□ -0.76
VPS53-205ENST00000541903 KIF7Q2M1P5 1343 aa10.28□□□□□ -0.76
VPS53-205ENST00000541903 CEP170BQ9Y4F5 1589 aaPredicted RBP10.26□□□□□ -0.77
VPS53-205ENST00000541903 PTPRMP28827 1452 aa10.26□□□□□ -0.77
VPS53-205ENST00000541903 THEMISQ8N1K5 641 aaPredicted RBP10.26□□□□□ -0.77
VPS53-205ENST00000541903 EID1Q9Y6B2 187 aa10.26□□□□□ -0.77
VPS53-205ENST00000541903 SLIT1O75093 1534 aa10.25□□□□□ -0.77
VPS53-205ENST00000541903 C11orf95C9JLR9 678 aaPredicted RBP10.25□□□□□ -0.77
VPS53-205ENST00000541903 SLC24A1O60721 1099 aa10.25□□□□□ -0.77
VPS53-205ENST00000541903 TMF1P82094 1093 aa10.25□□□□□ -0.77
VPS53-205ENST00000541903 BCANQ96GW7 911 aa10.25□□□□□ -0.77
VPS53-205ENST00000541903 POLR3GLQ9BT43 218 aa10.25□□□□□ -0.77
VPS53-205ENST00000541903 ALKQ9UM73 1620 aa10.25□□□□□ -0.77
VPS53-205ENST00000541903 POLR1AO95602 1720 aaPredicted RBP10.24□□□□□ -0.77
VPS53-205ENST00000541903 ARHGAP23Q9P227 1491 aa10.24□□□□□ -0.77
VPS53-205ENST00000541903 ASXL1Q8IXJ9 1541 aa10.24□□□□□ -0.77
VPS53-205ENST00000541903 TMEM132EQ6IEE7 984 aa10.24□□□□□ -0.77
VPS53-205ENST00000541903 TXNDC2Q86VQ3 553 aa10.24□□□□□ -0.77
VPS53-205ENST00000541903 TESK2Q96S53 571 aa10.24□□□□□ -0.77
VPS53-205ENST00000541903 SENP3Q9H4L4 574 aaPredicted RBP10.24□□□□□ -0.77
VPS53-205ENST00000541903 CENPJQ9HC77 1338 aaPredicted RBP10.24□□□□□ -0.77
VPS53-205ENST00000541903 PLEKHG1Q9ULL1 1385 aa10.24□□□□□ -0.77
VPS53-205ENST00000541903 ZNF142P52746 1687 aaPredicted RBP10.23□□□□□ -0.77
VPS53-205ENST00000541903 CDCA8Q53HL2 280 aa10.23□□□□□ -0.77
VPS53-205ENST00000541903 TRAK1Q9UPV9 953 aa10.23□□□□□ -0.77
VPS53-205ENST00000541903 DISP3Q9P2K9 1392 aa10.23□□□□□ -0.77
VPS53-205ENST00000541903 SBNO2Q9Y2G9 1366 aa10.23□□□□□ -0.77
VPS53-205ENST00000541903 YTHDC2Q9H6S0 1430 aaKnown RBP10.23□□□□□ -0.77
VPS53-205ENST00000541903 LRPPRCP42704 1394 aaKnown RBP10.22□□□□□ -0.77
VPS53-205ENST00000541903 MIER1Q8N108 512 aa10.21□□□□□ -0.77
VPS53-205ENST00000541903 STK26Q9P289 416 aa10.21□□□□□ -0.77
VPS53-205ENST00000541903 NRXN3Q9Y4C0 1643 aa10.21□□□□□ -0.78
VPS53-205ENST00000541903 ANP32CO43423 234 aa10.2□□□□□ -0.78
VPS53-205ENST00000541903 LTKP29376 864 aa10.2□□□□□ -0.78
VPS53-205ENST00000541903 ADAMTS13Q76LX8 1427 aa10.2□□□□□ -0.78
VPS53-205ENST00000541903 DLC1Q96QB1 1528 aa10.19□□□□□ -0.78
VPS53-205ENST00000541903 SETD1AO15047 1707 aaKnown RBP10.19□□□□□ -0.78
VPS53-205ENST00000541903 ARHGEF28Q8N1W1 1705 aaKnown RBP10.19□□□□□ -0.78
VPS53-205ENST00000541903 QRICH2Q9H0J4 1663 aa10.18□□□□□ -0.78
VPS53-205ENST00000541903 DIP2AQ14689 1571 aa10.18□□□□□ -0.78
VPS53-205ENST00000541903 METP08581 1390 aa10.18□□□□□ -0.78
VPS53-205ENST00000541903 ABCC11Q96J66 1382 aa10.18□□□□□ -0.78
VPS53-205ENST00000541903 ANKLE2Q86XL3 938 aa10.18□□□□□ -0.78
VPS53-205ENST00000541903 POGKQ9P215 609 aa10.18□□□□□ -0.78
VPS53-205ENST00000541903 PRAM1Q96QH2 718 aa10.17□□□□□ -0.78
VPS53-205ENST00000541903 MED14O60244 1454 aa10.17□□□□□ -0.78
VPS53-205ENST00000541903 TECPR2O15040 1411 aa10.16□□□□□ -0.78
VPS53-205ENST00000541903 EVC2Q86UK5 1308 aa10.16□□□□□ -0.78
VPS53-205ENST00000541903 SAFB2Q14151 953 aaKnown RBP eCLIP10.15□□□□□ -0.78
VPS53-205ENST00000541903 SLC26A8Q96RN1 970 aa10.15□□□□□ -0.78
VPS53-205ENST00000541903 TBX22Q9Y458 520 aa10.15□□□□□ -0.78
VPS53-205ENST00000541903 CPS1P31327 1500 aa10.15□□□□□ -0.78
VPS53-205ENST00000541903 SETD1BQ9UPS6 1966 aaKnown RBP10.15□□□□□ -0.78
VPS53-205ENST00000541903 KNDC1Q76NI1 1749 aa10.15□□□□□ -0.78
VPS53-205ENST00000541903 FAM135BQ49AJ0 1406 aa10.15□□□□□ -0.79
VPS53-205ENST00000541903 TULP4Q9NRJ4 1543 aa10.14□□□□□ -0.79
VPS53-205ENST00000541903 KDM4FA0A1W2PPD8 638 aa10.14□□□□□ -0.79
VPS53-205ENST00000541903 SIRT1Q96EB6 747 aa10.14□□□□□ -0.79
VPS53-205ENST00000541903 NPHP4O75161 1426 aaPredicted RBP10.14□□□□□ -0.79
VPS53-205ENST00000541903 PIK3R4Q99570 1358 aa10.14□□□□□ -0.79
VPS53-205ENST00000541903 MINK1Q8N4C8 1332 aaPredicted RBP10.13□□□□□ -0.79
VPS53-205ENST00000541903 ILDR1Q86SU0 546 aaPredicted RBP10.13□□□□□ -0.79
VPS53-205ENST00000541903 PUS7Q96PZ0 661 aaKnown RBP10.13□□□□□ -0.79
VPS53-205ENST00000541903 PTCH1Q13635 1447 aa10.12□□□□□ -0.79
VPS53-205ENST00000541903 PLEKHH1Q9ULM0 1364 aa10.12□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms