RNA–Protein interactions for RNA: ENST00000541764.5

LMO3-227, Transcript of LIM domain only 3, humanhuman

TSL 1 (best)

Gene LMO3, Length 1,489 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LMO3-227ENST00000541764 RGL3Q3MIN7 710 aa13.38□□□□□ -0.27
LMO3-227ENST00000541764 POLR3GLQ9BT43 218 aa13.38□□□□□ -0.27
LMO3-227ENST00000541764 RBM19Q9Y4C8 960 aaKnown RBP13.38□□□□□ -0.27
LMO3-227ENST00000541764 KIAA1210Q9ULL0 1709 aa13.38□□□□□ -0.27
LMO3-227ENST00000541764 IQGAP1P46940 1657 aa13.38□□□□□ -0.27
LMO3-227ENST00000541764 TMF1P82094 1093 aa13.37□□□□□ -0.27
LMO3-227ENST00000541764 KANK1Q14678 1352 aa13.37□□□□□ -0.27
LMO3-227ENST00000541764 LMTK2Q8IWU2 1503 aa13.36□□□□□ -0.27
LMO3-227ENST00000541764 DISP3Q9P2K9 1392 aa13.36□□□□□ -0.27
LMO3-227ENST00000541764 PDE3BQ13370 1112 aa13.36□□□□□ -0.27
LMO3-227ENST00000541764 AFAP1Q8N556 730 aa13.36□□□□□ -0.27
LMO3-227ENST00000541764 CLTCL1P53675 1640 aa13.35□□□□□ -0.27
LMO3-227ENST00000541764 MROH1Q8NDA8 1641 aa13.35□□□□□ -0.27
LMO3-227ENST00000541764 SLC24A1O60721 1099 aa13.35□□□□□ -0.27
LMO3-227ENST00000541764 ADGRL1O94910 1474 aa13.35□□□□□ -0.27
LMO3-227ENST00000541764 SCAF11Q99590 1463 aaKnown RBP13.35□□□□□ -0.27
LMO3-227ENST00000541764 MYOM2P54296 1465 aa13.34□□□□□ -0.27
LMO3-227ENST00000541764 ASXL2Q76L83 1435 aa13.33□□□□□ -0.27
LMO3-227ENST00000541764 CDCA8Q53HL2 280 aa13.33□□□□□ -0.28
LMO3-227ENST00000541764 NPC1L1Q9UHC9 1359 aa13.32□□□□□ -0.28
LMO3-227ENST00000541764 FANCIQ9NVI1 1328 aa13.32□□□□□ -0.28
LMO3-227ENST00000541764 IRX6P78412 446 aaPredicted RBP13.31□□□□□ -0.28
LMO3-227ENST00000541764 BLMP54132 1417 aaPredicted RBP13.31□□□□□ -0.28
LMO3-227ENST00000541764 SYNMO15061 1565 aa13.31□□□□□ -0.28
LMO3-227ENST00000541764 EFCAB6Q5THR3 1501 aa13.3□□□□□ -0.28
LMO3-227ENST00000541764 CFAP74Q9C0B2 1584 aa13.3□□□□□ -0.28
LMO3-227ENST00000541764 ZNF518AQ6AHZ1 1483 aa13.3□□□□□ -0.28
LMO3-227ENST00000541764 PANK3Q9H999 370 aa13.29□□□□□ -0.28
LMO3-227ENST00000541764 NRXN1Q9ULB1 1477 aa13.29□□□□□ -0.28
LMO3-227ENST00000541764 EIF3AQ14152 1382 aaKnown RBP13.29□□□□□ -0.28
LMO3-227ENST00000541764 KIDINS220Q9ULH0 1771 aa13.29□□□□□ -0.28
LMO3-227ENST00000541764 MLH3Q9UHC1 1453 aa13.28□□□□□ -0.28
LMO3-227ENST00000541764 MAP3K4Q9Y6R4 1608 aa13.27□□□□□ -0.28
LMO3-227ENST00000541764 ANP32EQ9BTT0 268 aa13.27□□□□□ -0.29
LMO3-227ENST00000541764 KIF3BO15066 747 aa13.26□□□□□ -0.29
LMO3-227ENST00000541764 SBNO2Q9Y2G9 1366 aa13.26□□□□□ -0.29
LMO3-227ENST00000541764 IFT172Q9UG01 1749 aa13.26□□□□□ -0.29
LMO3-227ENST00000541764 PIK3C2GO75747 1445 aa13.24□□□□□ -0.29
LMO3-227ENST00000541764 POGZQ7Z3K3 1410 aa13.24□□□□□ -0.29
LMO3-227ENST00000541764 MYO3AQ8NEV4 1616 aa13.24□□□□□ -0.29
LMO3-227ENST00000541764 AMER1Q5JTC6 1135 aaPredicted RBP13.23□□□□□ -0.29
LMO3-227ENST00000541764 B4GALNT3Q6L9W6 998 aa13.23□□□□□ -0.29
LMO3-227ENST00000541764 ADGRB3O60242 1522 aa13.23□□□□□ -0.29
LMO3-227ENST00000541764 ASXL1Q8IXJ9 1541 aa13.23□□□□□ -0.29
LMO3-227ENST00000541764 SETBP1Q9Y6X0 1596 aa13.23□□□□□ -0.29
LMO3-227ENST00000541764 PPRC1Q5VV67 1664 aaKnown RBP13.23□□□□□ -0.29
LMO3-227ENST00000541764 KIF1BO60333 1816 aa13.23□□□□□ -0.29
LMO3-227ENST00000541764 ABCA6Q8N139 1617 aa13.22□□□□□ -0.29
LMO3-227ENST00000541764 MYOM1P52179 1685 aa13.21□□□□□ -0.29
LMO3-227ENST00000541764 NEO1Q92859 1461 aa13.21□□□□□ -0.29
LMO3-227ENST00000541764 NPM1P06748 294 aaKnown RBP eCLIP13.21□□□□□ -0.3
LMO3-227ENST00000541764 RRP1P56182 461 aaKnown RBP13.21□□□□□ -0.3
LMO3-227ENST00000541764 CNGB1Q14028 1251 aaPredicted RBP13.21□□□□□ -0.3
LMO3-227ENST00000541764 KNSTRNQ9Y448 316 aa13.21□□□□□ -0.3
LMO3-227ENST00000541764 KDM5AP29375 1690 aaKnown RBP13.21□□□□□ -0.3
LMO3-227ENST00000541764 FRMPD1Q5SYB0 1578 aa13.2□□□□□ -0.3
LMO3-227ENST00000541764 CD109Q6YHK3 1445 aa13.2□□□□□ -0.3
LMO3-227ENST00000541764 RPGRIP1LQ68CZ1 1315 aa13.2□□□□□ -0.3
LMO3-227ENST00000541764 OSCARQ8IYS5 282 aa13.2□□□□□ -0.3
LMO3-227ENST00000541764 RCAN3Q9UKA8 241 aa13.2□□□□□ -0.3
LMO3-227ENST00000541764 HECW2Q9P2P5 1572 aa13.2□□□□□ -0.3
LMO3-227ENST00000541764 CC2D1BQ5T0F9 858 aaKnown RBP13.19□□□□□ -0.3
LMO3-227ENST00000541764 ERVK-7P63135 1459 aa13.19□□□□□ -0.3
LMO3-227ENST00000541764 SLC4A2P04920 1241 aa13.18□□□□□ -0.3
LMO3-227ENST00000541764 PPP2R1AP30153 589 aa13.18□□□□□ -0.3
LMO3-227ENST00000541764 CCDC136Q96JN2 1154 aa13.17□□□□□ -0.3
LMO3-227ENST00000541764 MROH2AA6NES4 1674 aa13.17□□□□□ -0.3
LMO3-227ENST00000541764 NPATQ14207 1427 aa13.16□□□□□ -0.3
LMO3-227ENST00000541764 UGGT1Q9NYU2 1555 aa13.16□□□□□ -0.3
LMO3-227ENST00000541764 ADGRF5Q8IZF2 1346 aa13.16□□□□□ -0.3
LMO3-227ENST00000541764 NGEFQ8N5V2 710 aa13.16□□□□□ -0.3
LMO3-227ENST00000541764 PUS7Q96PZ0 661 aaKnown RBP13.16□□□□□ -0.3
LMO3-227ENST00000541764 NOS1P29475 1434 aa13.16□□□□□ -0.3
LMO3-227ENST00000541764 ARHGAP31Q2M1Z3 1444 aa13.16□□□□□ -0.3
LMO3-227ENST00000541764 ABCC3O15438 1527 aa13.15□□□□□ -0.3
LMO3-227ENST00000541764 ZNF521Q96K83 1311 aa13.15□□□□□ -0.3
LMO3-227ENST00000541764 CFAP70Q5T0N1 1121 aa13.15□□□□□ -0.3
LMO3-227ENST00000541764 PPLO60437 1756 aa13.14□□□□□ -0.31
LMO3-227ENST00000541764 C14orf93Q9H972 538 aaKnown RBP13.13□□□□□ -0.31
LMO3-227ENST00000541764 MYT1LQ9UL68 1186 aa13.13□□□□□ -0.31
LMO3-227ENST00000541764 ADAMTS8Q9UP79 889 aa13.13□□□□□ -0.31
LMO3-227ENST00000541764 ADGRB1O14514 1584 aa13.13□□□□□ -0.31
LMO3-227ENST00000541764 PIK3C2BO00750 1634 aa13.12□□□□□ -0.31
LMO3-227ENST00000541764 ZC3H13Q5T200 1668 aaKnown RBP13.11□□□□□ -0.31
LMO3-227ENST00000541764 WDR43Q15061 677 aaKnown RBP eCLIP13.1□□□□□ -0.31
LMO3-227ENST00000541764 ZFYVE9O95405 1425 aa13.1□□□□□ -0.31
LMO3-227ENST00000541764 CENPJQ9HC77 1338 aaPredicted RBP13.1□□□□□ -0.31
LMO3-227ENST00000541764 CAMSAP1Q5T5Y3 1602 aa13.1□□□□□ -0.31
LMO3-227ENST00000541764 USP32Q8NFA0 1604 aa13.1□□□□□ -0.31
LMO3-227ENST00000541764 CDCA7LQ96GN5 454 aa13.1□□□□□ -0.31
LMO3-227ENST00000541764 DIP2CQ9Y2E4 1556 aa13.09□□□□□ -0.31
LMO3-227ENST00000541764 POLR3AO14802 1390 aaPredicted RBP13.09□□□□□ -0.31
LMO3-227ENST00000541764 SAMD1Q6SPF0 538 aaPredicted RBP13.09□□□□□ -0.31
LMO3-227ENST00000541764 TRMT2AQ8IZ69 625 aaKnown RBP13.09□□□□□ -0.31
LMO3-227ENST00000541764 GLI2P10070 1586 aa13.09□□□□□ -0.31
LMO3-227ENST00000541764 EXOC6Q8TAG9 804 aa13.08□□□□□ -0.32
LMO3-227ENST00000541764 PLEKHH1Q9ULM0 1364 aa13.07□□□□□ -0.32
LMO3-227ENST00000541764 TCERG1O14776 1098 aaKnown RBP13.07□□□□□ -0.32
LMO3-227ENST00000541764 DUSP27Q5VZP5 1158 aa13.07□□□□□ -0.32
LMO3-227ENST00000541764 CARD14Q9BXL6 1004 aa13.07□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 11.8 ms