RNA–Protein interactions for RNA: ENST00000541351.3

YBX3-211, Transcript of Y-box binding protein 3, humanhuman

TSL 4

Gene YBX3, Length 717 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-211ENST00000541351 ARHGAP31Q2M1Z3 1444 aa15.35■□□□□ 0.05
YBX3-211ENST00000541351 EFCAB6Q5THR3 1501 aa15.34■□□□□ 0.05
YBX3-211ENST00000541351 HDGFP51858 240 aaKnown RBP15.34■□□□□ 0.05
YBX3-211ENST00000541351 EIF2AK4Q9P2K8 1649 aaKnown RBP15.34■□□□□ 0.05
YBX3-211ENST00000541351 KDM5AP29375 1690 aaKnown RBP15.34■□□□□ 0.05
YBX3-211ENST00000541351 C8orf37Q96NL8 207 aa15.33■□□□□ 0.04
YBX3-211ENST00000541351 C19orf44Q9H6X5 657 aa15.32■□□□□ 0.04
YBX3-211ENST00000541351 SETBP1Q9Y6X0 1596 aa15.32■□□□□ 0.04
YBX3-211ENST00000541351 TET3O43151 1660 aa15.32■□□□□ 0.04
YBX3-211ENST00000541351 LRRC59Q96AG4 307 aaKnown RBP15.31■□□□□ 0.04
YBX3-211ENST00000541351 CEP162Q5TB80 1403 aa15.31■□□□□ 0.04
YBX3-211ENST00000541351 EHBP1L1Q8N3D4 1523 aa15.31■□□□□ 0.04
YBX3-211ENST00000541351 ARHGEF5Q12774 1597 aa15.29■□□□□ 0.04
YBX3-211ENST00000541351 PIK3C2BO00750 1634 aa15.28■□□□□ 0.04
YBX3-211ENST00000541351 CFAP65Q6ZU64 1925 aaKnown RBP15.28■□□□□ 0.04
YBX3-211ENST00000541351 SETD5Q9C0A6 1442 aa15.27■□□□□ 0.04
YBX3-211ENST00000541351 TRPC5Q9UL62 973 aaPredicted RBP15.27■□□□□ 0.04
YBX3-211ENST00000541351 KANK1Q14678 1352 aa15.26■□□□□ 0.03
YBX3-211ENST00000541351 PPP1R15AO75807 674 aaPredicted RBP15.26■□□□□ 0.03
YBX3-211ENST00000541351 CEP152O94986 1710 aa15.26■□□□□ 0.03
YBX3-211ENST00000541351 BRINP3Q76B58 766 aa15.25■□□□□ 0.03
YBX3-211ENST00000541351 DIP2AQ14689 1571 aa15.24■□□□□ 0.03
YBX3-211ENST00000541351 IDI1Q13907 227 aa15.24■□□□□ 0.03
YBX3-211ENST00000541351 SLC52A1Q9NWF4 448 aa15.24■□□□□ 0.03
YBX3-211ENST00000541351 MROH1Q8NDA8 1641 aa15.24■□□□□ 0.03
YBX3-211ENST00000541351 SF3B2Q13435 895 aaKnown RBP15.23■□□□□ 0.03
YBX3-211ENST00000541351 TBX22Q9Y458 520 aa15.23■□□□□ 0.03
YBX3-211ENST00000541351 PLEKHG1Q9ULL1 1385 aa15.23■□□□□ 0.03
YBX3-211ENST00000541351 LRP5O75197 1615 aa15.22■□□□□ 0.03
YBX3-211ENST00000541351 USP21Q9UK80 565 aa15.22■□□□□ 0.03
YBX3-211ENST00000541351 DCCP43146 1447 aa15.22■□□□□ 0.03
YBX3-211ENST00000541351 MAST1Q9Y2H9 1570 aa15.22■□□□□ 0.03
YBX3-211ENST00000541351 DUOX2Q9NRD8 1548 aa15.22■□□□□ 0.03
YBX3-211ENST00000541351 PIK3R4Q99570 1358 aa15.21■□□□□ 0.02
YBX3-211ENST00000541351 CHD2O14647 1828 aaKnown RBP15.2■□□□□ 0.02
YBX3-211ENST00000541351 ADGRB3O60242 1522 aa15.19■□□□□ 0.02
YBX3-211ENST00000541351 ABCF1Q8NE71 845 aaKnown RBP eCLIP15.19■□□□□ 0.02
YBX3-211ENST00000541351 SIPA1L2Q9P2F8 1722 aaPredicted RBP15.19■□□□□ 0.02
YBX3-211ENST00000541351 BLMP54132 1417 aaPredicted RBP15.18■□□□□ 0.02
YBX3-211ENST00000541351 ADAMTS2O95450 1211 aa15.18■□□□□ 0.02
YBX3-211ENST00000541351 ASXL1Q8IXJ9 1541 aa15.17■□□□□ 0.02
YBX3-211ENST00000541351 PNPLA6Q8IY17 1366 aa15.17■□□□□ 0.02
YBX3-211ENST00000541351 ERBINQ96RT1 1412 aa15.17■□□□□ 0.02
YBX3-211ENST00000541351 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.16■□□□□ 0.024e-9■□□□□ 10.2
YBX3-211ENST00000541351 FNBP4Q8N3X1 1017 aaPredicted RBP15.15■□□□□ 0.02
YBX3-211ENST00000541351 PTCH1Q13635 1447 aa15.14■□□□□ 0.01
YBX3-211ENST00000541351 YY1P25490 414 aa15.13■□□□□ 0.01
YBX3-211ENST00000541351 ATRNO75882 1429 aa15.12■□□□□ 0.01
YBX3-211ENST00000541351 RIMS2Q9UQ26 1411 aa15.12■□□□□ 0.01
YBX3-211ENST00000541351 NHSL1Q5SYE7 1610 aa15.12■□□□□ 0.01
YBX3-211ENST00000541351 KIF15Q9NS87 1388 aa15.11■□□□□ 0.01
YBX3-211ENST00000541351 ZFYVE9O95405 1425 aa15.11■□□□□ 0.01
YBX3-211ENST00000541351 NOS1P29475 1434 aa15.1■□□□□ 0.01
YBX3-211ENST00000541351 LMTK2Q8IWU2 1503 aa15.1■□□□□ 0.01
YBX3-211ENST00000541351 DCAF8L1A6NGE4 600 aa15.09■□□□□ 0.01
YBX3-211ENST00000541351 EP400Q96L91 3159 aa15.09■□□□□ 0.01
YBX3-211ENST00000541351 MYOM3Q5VTT5 1437 aa15.09■□□□□ 0.01
YBX3-211ENST00000541351 AMOTL2Q9Y2J4 779 aa15.08■□□□□ 0
YBX3-211ENST00000541351 MST1RQ04912 1400 aa15.08■□□□□ 0
YBX3-211ENST00000541351 RPRD2Q5VT52 1461 aaKnown RBP15.08■□□□□ 0
YBX3-211ENST00000541351 TRPM2O94759 1503 aa15.07■□□□□ 0
YBX3-211ENST00000541351 GJD4Q96KN9 370 aaPredicted RBP15.07■□□□□ 0
YBX3-211ENST00000541351 HRCP23327 699 aa15.06■□□□□ 0
YBX3-211ENST00000541351 IFFO2Q5TF58 517 aa15.06■□□□□ 0
YBX3-211ENST00000541351 BAG6P46379 1132 aa15.05■□□□□ -0
YBX3-211ENST00000541351 DEFB132Q7Z7B7 95 aa15.05■□□□□ -0
YBX3-211ENST00000541351 UNC13BO14795 1591 aa15.04■□□□□ -0
YBX3-211ENST00000541351 RRP7BPQ9NSQ0 103 aa15.04■□□□□ -0
YBX3-211ENST00000541351 ADAMTS13Q76LX8 1427 aa15.03■□□□□ -0
YBX3-211ENST00000541351 CHGAP10645 457 aaKnown RBP15.01□□□□□ -0.01
YBX3-211ENST00000541351 SOS2Q07890 1332 aaPredicted RBP15□□□□□ -0.01
YBX3-211ENST00000541351 PSDA5PKW4 1024 aaPredicted RBP15□□□□□ -0.01
YBX3-211ENST00000541351 ADGRL3Q9HAR2 1447 aa15□□□□□ -0.01
YBX3-211ENST00000541351 DDX17Q92841 729 aaKnown RBP14.99□□□□□ -0.01
YBX3-211ENST00000541351 SPHKAPQ2M3C7 1700 aa14.99□□□□□ -0.01
YBX3-211ENST00000541351 BCL9LQ86UU0 1499 aa14.98□□□□□ -0.01
YBX3-211ENST00000541351 ANKRD30AQ9BXX3 1397 aa14.97□□□□□ -0.01
YBX3-211ENST00000541351 TMEM131LA2VDJ0 1609 aa14.96□□□□□ -0.01
YBX3-211ENST00000541351 UNC5CLQ8IV45 518 aa14.96□□□□□ -0.01
YBX3-211ENST00000541351 GCC2Q8IWJ2 1684 aa14.96□□□□□ -0.01
YBX3-211ENST00000541351 C1orf167Q5SNV9 1468 aa14.95□□□□□ -0.02
YBX3-211ENST00000541351 LAMC1P11047 1609 aa14.94□□□□□ -0.02
YBX3-211ENST00000541351 NPHP3Q7Z494 1330 aa14.93□□□□□ -0.02
YBX3-211ENST00000541351 PTPRUQ92729 1446 aa14.93□□□□□ -0.02
YBX3-211ENST00000541351 COL22A1Q8NFW1 1626 aaPredicted RBP14.93□□□□□ -0.02
YBX3-211ENST00000541351 KRT27Q7Z3Y8 459 aa14.93□□□□□ -0.02
YBX3-211ENST00000541351 MYOM2P54296 1465 aa14.93□□□□□ -0.02
YBX3-211ENST00000541351 RALGAPBQ86X10 1494 aa14.93□□□□□ -0.02
YBX3-211ENST00000541351 SEPT12Q8IYM1 358 aa14.92□□□□□ -0.02
YBX3-211ENST00000541351 XRN1Q8IZH2 1706 aaKnown RBP14.92□□□□□ -0.02
YBX3-211ENST00000541351 TNKS1BP1Q9C0C2 1729 aaKnown RBP14.92□□□□□ -0.02
YBX3-211ENST00000541351 MYO5BQ9ULV0 1848 aa14.91□□□□□ -0.02
YBX3-211ENST00000541351 SENP3-EIF4A1A0A087X0R7 540 aa14.9□□□□□ -0.02
YBX3-211ENST00000541351 R3HDM1Q15032 1099 aaKnown RBP14.9□□□□□ -0.02
YBX3-211ENST00000541351 PTPN23Q9H3S7 1636 aa14.9□□□□□ -0.02
YBX3-211ENST00000541351 ABCC5O15440 1437 aa14.9□□□□□ -0.02
YBX3-211ENST00000541351 LRPPRCP42704 1394 aaKnown RBP14.89□□□□□ -0.03
YBX3-211ENST00000541351 CROCC2H7BZ55 1655 aa14.88□□□□□ -0.03
YBX3-211ENST00000541351 PPP1R1BQ9UD71 204 aaPredicted RBP14.87□□□□□ -0.03
YBX3-211ENST00000541351 CCDC9Q9Y3X0 531 aaKnown RBP14.87□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 11.6 ms