RNA–Protein interactions for RNA: ENST00000541284.5

CNOT4-212, Transcript of CCR4-NOT transcription complex subunit 4, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene CNOT4, Length 3,563 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CNOT4-212ENST00000541284 ROCK2O75116 1388 aaKnown RBP13.05□□□□□ -0.32
CNOT4-212ENST00000541284 USP32Q8NFA0 1604 aa13.05□□□□□ -0.32
CNOT4-212ENST00000541284 UGGT1Q9NYU2 1555 aa13.04□□□□□ -0.32
CNOT4-212ENST00000541284 NEXMIFQ5QGS0 1516 aa13.04□□□□□ -0.32
CNOT4-212ENST00000541284 NOS1P29475 1434 aa13.04□□□□□ -0.32
CNOT4-212ENST00000541284 ARHGEF40Q8TER5 1519 aa13.03□□□□□ -0.32
CNOT4-212ENST00000541284 B4GALNT3Q6L9W6 998 aa13.03□□□□□ -0.32
CNOT4-212ENST00000541284 OSCARQ8IYS5 282 aa13.02□□□□□ -0.32
CNOT4-212ENST00000541284 ZNF326Q5BKZ1 582 aaKnown RBP13.02□□□□□ -0.33
CNOT4-212ENST00000541284 NUDCQ9Y266 331 aa13.01□□□□□ -0.33
CNOT4-212ENST00000541284 EFCAB2Q5VUJ9 269 aa13.01□□□□□ -0.33
CNOT4-212ENST00000541284 CD109Q6YHK3 1445 aa13□□□□□ -0.33
CNOT4-212ENST00000541284 ST20-MTHFSA0A0A6YYL1 179 aa13□□□□□ -0.33
CNOT4-212ENST00000541284 CARD11Q9BXL7 1154 aa13□□□□□ -0.33
CNOT4-212ENST00000541284 QRICH2Q9H0J4 1663 aa12.98□□□□□ -0.33
CNOT4-212ENST00000541284 NRXN3Q9Y4C0 1643 aa12.98□□□□□ -0.33
CNOT4-212ENST00000541284 BRD4O60885 1362 aaPredicted RBP12.98□□□□□ -0.33
CNOT4-212ENST00000541284 ASXL1Q8IXJ9 1541 aa12.98□□□□□ -0.33
CNOT4-212ENST00000541284 SPATA31D1Q6ZQQ2 1576 aa12.98□□□□□ -0.33
CNOT4-212ENST00000541284 PARD3Q8TEW0 1356 aa12.98□□□□□ -0.33
CNOT4-212ENST00000541284 NPATQ14207 1427 aa12.97□□□□□ -0.33
CNOT4-212ENST00000541284 KTN1Q86UP2 1357 aaKnown RBP12.97□□□□□ -0.33
CNOT4-212ENST00000541284 CCDC144AA2RUR9 1427 aa12.97□□□□□ -0.33
CNOT4-212ENST00000541284 KNDC1Q76NI1 1749 aa12.96□□□□□ -0.33
CNOT4-212ENST00000541284 TSPY4P0CV99 314 aa12.96□□□□□ -0.33
CNOT4-212ENST00000541284 TSPY10P0CW01 314 aa12.96□□□□□ -0.33
CNOT4-212ENST00000541284 DCAF11Q8TEB1 546 aa12.96□□□□□ -0.33
CNOT4-212ENST00000541284 PER1O15534 1290 aaPredicted RBP12.95□□□□□ -0.34
CNOT4-212ENST00000541284 MYBBP1AQ9BQG0 1328 aaKnown RBP12.95□□□□□ -0.34
CNOT4-212ENST00000541284 PIK3C2GO75747 1445 aa12.95□□□□□ -0.34
CNOT4-212ENST00000541284 ANKRD26Q9UPS8 1709 aa12.94□□□□□ -0.34
CNOT4-212ENST00000541284 KDM2AQ9Y2K7 1162 aa12.94□□□□□ -0.34
CNOT4-212ENST00000541284 NBPF1Q3BBV0 1214 aa12.93□□□□□ -0.34
CNOT4-212ENST00000541284 TESK2Q96S53 571 aa12.93□□□□□ -0.34
CNOT4-212ENST00000541284 POLR3GLQ9BT43 218 aa12.93□□□□□ -0.34
CNOT4-212ENST00000541284 TSPOAP1O95153 1857 aa12.93□□□□□ -0.34
CNOT4-212ENST00000541284 SENP3-EIF4A1A0A087X0R7 540 aa12.92□□□□□ -0.34
CNOT4-212ENST00000541284 CNGB1Q14028 1251 aaPredicted RBP12.92□□□□□ -0.34
CNOT4-212ENST00000541284 DISP3Q9P2K9 1392 aa12.92□□□□□ -0.34
CNOT4-212ENST00000541284 RALBP1Q15311 655 aa12.92□□□□□ -0.34
CNOT4-212ENST00000541284 SHPRHQ149N8 1683 aa12.91□□□□□ -0.34
CNOT4-212ENST00000541284 AFAP1Q8N556 730 aa12.91□□□□□ -0.34
CNOT4-212ENST00000541284 ZFYVE9O95405 1425 aa12.91□□□□□ -0.34
CNOT4-212ENST00000541284 SPAG9O60271 1321 aaKnown RBP12.9□□□□□ -0.34
CNOT4-212ENST00000541284 BLMP54132 1417 aaPredicted RBP12.9□□□□□ -0.34
CNOT4-212ENST00000541284 TMC1Q8TDI8 760 aa12.9□□□□□ -0.34
CNOT4-212ENST00000541284 YEATS2Q9ULM3 1422 aa12.89□□□□□ -0.35
CNOT4-212ENST00000541284 INSRP06213 1382 aa12.88□□□□□ -0.35
CNOT4-212ENST00000541284 SBNO2Q9Y2G9 1366 aa12.87□□□□□ -0.35
CNOT4-212ENST00000541284 UBR1Q8IWV7 1749 aa12.87□□□□□ -0.35
CNOT4-212ENST00000541284 SCAF11Q99590 1463 aaKnown RBP12.86□□□□□ -0.35
CNOT4-212ENST00000541284 ERVK-7P63135 1459 aa12.86□□□□□ -0.35
CNOT4-212ENST00000541284 NLRP13Q86W25 1043 aa12.85□□□□□ -0.35
CNOT4-212ENST00000541284 RRP1P56182 461 aaKnown RBP12.84□□□□□ -0.35
CNOT4-212ENST00000541284 STAC3Q96MF2 364 aa12.84□□□□□ -0.35
CNOT4-212ENST00000541284 RIMS1Q86UR5 1692 aaKnown RBP12.84□□□□□ -0.35
CNOT4-212ENST00000541284 RGL3Q3MIN7 710 aa12.82□□□□□ -0.36
CNOT4-212ENST00000541284 WASHC2CQ9Y4E1 1318 aa12.82□□□□□ -0.36
CNOT4-212ENST00000541284 CFAP65Q6ZU64 1925 aaKnown RBP12.82□□□□□ -0.36
CNOT4-212ENST00000541284 TOPAZ1Q8N9V7 1692 aa12.82□□□□□ -0.36
CNOT4-212ENST00000541284 PAK3O75914 559 aaPredicted RBP12.81□□□□□ -0.36
CNOT4-212ENST00000541284 CCDC136Q96JN2 1154 aa12.81□□□□□ -0.36
CNOT4-212ENST00000541284 TULP4Q9NRJ4 1543 aa12.81□□□□□ -0.36
CNOT4-212ENST00000541284 EXOC6Q8TAG9 804 aa12.8□□□□□ -0.36
CNOT4-212ENST00000541284 CDCA7LQ96GN5 454 aa12.8□□□□□ -0.36
CNOT4-212ENST00000541284 GRWD1Q9BQ67 446 aaKnown RBP eCLIP12.79□□□□□ -0.362e-6■■□□□ 11.9
CNOT4-212ENST00000541284 BCL11AQ9H165 835 aa12.79□□□□□ -0.36
CNOT4-212ENST00000541284 DLC1Q96QB1 1528 aa12.79□□□□□ -0.36
CNOT4-212ENST00000541284 C3P01024 1663 aa12.79□□□□□ -0.36
CNOT4-212ENST00000541284 PANK3Q9H999 370 aa12.79□□□□□ -0.36
CNOT4-212ENST00000541284 RCAN3Q9UKA8 241 aa12.79□□□□□ -0.36
CNOT4-212ENST00000541284 PTPRMP28827 1452 aa12.78□□□□□ -0.36
CNOT4-212ENST00000541284 PDE3BQ13370 1112 aa12.78□□□□□ -0.36
CNOT4-212ENST00000541284 AKAP12Q02952 1782 aa12.78□□□□□ -0.36
CNOT4-212ENST00000541284 NRKQ7Z2Y5 1582 aa12.78□□□□□ -0.36
CNOT4-212ENST00000541284 USP54Q70EL1 1684 aa12.77□□□□□ -0.36
CNOT4-212ENST00000541284 NPC1L1Q9UHC9 1359 aa12.77□□□□□ -0.36
CNOT4-212ENST00000541284 KIF20BQ96Q89 1820 aa12.77□□□□□ -0.37
CNOT4-212ENST00000541284 ADGRB2O60241 1585 aa12.76□□□□□ -0.37
CNOT4-212ENST00000541284 NOP58Q9Y2X3 529 aaKnown RBP12.76□□□□□ -0.37
CNOT4-212ENST00000541284 ZNF142P52746 1687 aaPredicted RBP12.76□□□□□ -0.37
CNOT4-212ENST00000541284 CC2D1BQ5T0F9 858 aaKnown RBP12.75□□□□□ -0.37
CNOT4-212ENST00000541284 MON2Q7Z3U7 1717 aa12.75□□□□□ -0.37
CNOT4-212ENST00000541284 ALKQ9UM73 1620 aa12.75□□□□□ -0.37
CNOT4-212ENST00000541284 CPS1P31327 1500 aa12.74□□□□□ -0.37
CNOT4-212ENST00000541284 ZNF521Q96K83 1311 aa12.74□□□□□ -0.37
CNOT4-212ENST00000541284 AMER1Q5JTC6 1135 aaPredicted RBP12.74□□□□□ -0.37
CNOT4-212ENST00000541284 KANK1Q14678 1352 aa12.74□□□□□ -0.37
CNOT4-212ENST00000541284 PLEKHH1Q9ULM0 1364 aa12.74□□□□□ -0.37
CNOT4-212ENST00000541284 TMF1P82094 1093 aa12.73□□□□□ -0.37
CNOT4-212ENST00000541284 SALL2Q9Y467 1007 aaPredicted RBP12.73□□□□□ -0.37
CNOT4-212ENST00000541284 MARF1Q9Y4F3 1742 aaKnown RBP12.72□□□□□ -0.37
CNOT4-212ENST00000541284 IPO9Q96P70 1041 aaKnown RBP12.72□□□□□ -0.37
CNOT4-212ENST00000541284 FER1L4A9Z1Z3 1794 aa12.71□□□□□ -0.37
CNOT4-212ENST00000541284 NALCNQ8IZF0 1738 aa12.71□□□□□ -0.37
CNOT4-212ENST00000541284 NLRP1Q9C000 1473 aa12.71□□□□□ -0.37
CNOT4-212ENST00000541284 A2ML1A8K2U0 1454 aa12.71□□□□□ -0.38
CNOT4-212ENST00000541284 CD163L1Q9NR16 1453 aa12.7□□□□□ -0.38
CNOT4-212ENST00000541284 ADAMTS8Q9UP79 889 aa12.7□□□□□ -0.38
CNOT4-212ENST00000541284 PLIN1O60240 522 aa12.7□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 48.4 ms