RNA–Protein interactions for RNA: ENST00000540539.5

CLIP1-214, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2 BASIC

Gene CLIP1, Length 2,592 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-214ENST00000540539 CDK11BP21127 795 aaKnown RBP12.1□□□□□ -0.47
CLIP1-214ENST00000540539 FAM69CQ0P6D2 419 aa12.1□□□□□ -0.47
CLIP1-214ENST00000540539 FAM50AQ14320 339 aaKnown RBP12.1□□□□□ -0.47
CLIP1-214ENST00000540539 CCDC94Q9BW85 323 aaPredicted RBP12.1□□□□□ -0.47
CLIP1-214ENST00000540539 GRPEL1Q9HAV7 217 aa12.1□□□□□ -0.47
CLIP1-214ENST00000540539 PLCH2O75038 1416 aa12.09□□□□□ -0.47
CLIP1-214ENST00000540539 PTPN23Q9H3S7 1636 aa12.09□□□□□ -0.47
CLIP1-214ENST00000540539 GLI2P10070 1586 aa12.09□□□□□ -0.47
CLIP1-214ENST00000540539 IRX3P78415 501 aaPredicted RBP12.09□□□□□ -0.47
CLIP1-214ENST00000540539 ARHGAP5Q13017 1502 aa12.09□□□□□ -0.47
CLIP1-214ENST00000540539 FOXD4L1Q9NU39 408 aa12.09□□□□□ -0.47
CLIP1-214ENST00000540539 TAOK2Q9UL54 1235 aa12.09□□□□□ -0.47
CLIP1-214ENST00000540539 ZNF777Q9ULD5 760 aaPredicted RBP12.09□□□□□ -0.47
CLIP1-214ENST00000540539 C8orf34Q49A92 452 aa12.08□□□□□ -0.48
CLIP1-214ENST00000540539 CD109Q6YHK3 1445 aa12.08□□□□□ -0.48
CLIP1-214ENST00000540539 KIF13AQ9H1H9 1805 aa12.08□□□□□ -0.48
CLIP1-214ENST00000540539 ZNF644Q9H582 1327 aaPredicted RBP12.08□□□□□ -0.48
CLIP1-214ENST00000540539 DNTTIP2Q5QJE6 756 aaKnown RBP12.08□□□□□ -0.48
CLIP1-214ENST00000540539 ARAP3Q8WWN8 1544 aa12.07□□□□□ -0.48
CLIP1-214ENST00000540539 MAP3K4Q9Y6R4 1608 aa12.07□□□□□ -0.48
CLIP1-214ENST00000540539 UQCRHLA0A096LP55 91 aa12.07□□□□□ -0.48
CLIP1-214ENST00000540539 E9PSI1 815 aa12.07□□□□□ -0.48
CLIP1-214ENST00000540539 UQCRHP07919 91 aa12.07□□□□□ -0.48
CLIP1-214ENST00000540539 SLKQ9H2G2 1235 aaPredicted RBP12.07□□□□□ -0.48
CLIP1-214ENST00000540539 R3HCC1Q9Y3T6 440 aaKnown RBP12.07□□□□□ -0.48
CLIP1-214ENST00000540539 TCOF1Q13428 1488 aaKnown RBP12.07□□□□□ -0.48
CLIP1-214ENST00000540539 FAM161AQ3B820 660 aa12.06□□□□□ -0.48
CLIP1-214ENST00000540539 CAMSAP2Q08AD1 1489 aa12.06□□□□□ -0.48
CLIP1-214ENST00000540539 MAPK8IP2Q13387 824 aaPredicted RBP12.06□□□□□ -0.48
CLIP1-214ENST00000540539 EFCAB2Q5VUJ9 269 aa12.06□□□□□ -0.48
CLIP1-214ENST00000540539 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP12.05□□□□□ -0.48
CLIP1-214ENST00000540539 PLCB2Q00722 1185 aa12.05□□□□□ -0.48
CLIP1-214ENST00000540539 TAF3Q5VWG9 929 aa12.05□□□□□ -0.48
CLIP1-214ENST00000540539 BCCIPQ9P287 314 aaKnown RBP eCLIP12.05□□□□□ -0.48
CLIP1-214ENST00000540539 KCNG1Q9UIX4 513 aa12.05□□□□□ -0.48
CLIP1-214ENST00000540539 SETD5Q9C0A6 1442 aa12.05□□□□□ -0.48
CLIP1-214ENST00000540539 SAMD9LQ8IVG5 1584 aa12.05□□□□□ -0.48
CLIP1-214ENST00000540539 FANCAO15360 1455 aa12.04□□□□□ -0.48
CLIP1-214ENST00000540539 TSPOAP1O95153 1857 aa12.04□□□□□ -0.48
CLIP1-214ENST00000540539 TMC1Q8TDI8 760 aa12.04□□□□□ -0.48
CLIP1-214ENST00000540539 ANTXR1Q9H6X2 564 aa12.04□□□□□ -0.48
CLIP1-214ENST00000540539 DYNC1I1O14576 645 aa12.04□□□□□ -0.48
CLIP1-214ENST00000540539 ZSCAN30Q86W11 494 aa12.03□□□□□ -0.48
CLIP1-214ENST00000540539 CGNQ9P2M7 1197 aaKnown RBP12.03□□□□□ -0.48
CLIP1-214ENST00000540539 SENP3-EIF4A1A0A087X0R7 540 aa12.02□□□□□ -0.48
CLIP1-214ENST00000540539 CNPY4Q8N129 248 aa12.02□□□□□ -0.48
CLIP1-214ENST00000540539 TRHP20396 242 aaPredicted RBP12.02□□□□□ -0.49
CLIP1-214ENST00000540539 CERS3Q8IU89 383 aa12.01□□□□□ -0.49
CLIP1-214ENST00000540539 ISY1Q9ULR0 285 aaKnown RBP12.01□□□□□ -0.49
CLIP1-214ENST00000540539 TONSLQ96HA7 1378 aa12.01□□□□□ -0.49
CLIP1-214ENST00000540539 MCM4P33991 863 aa12.01□□□□□ -0.49
CLIP1-214ENST00000540539 HNRNPMP52272 730 aaKnown RBP eCLIP12.01□□□□□ -0.49
CLIP1-214ENST00000540539 PLEKHH2Q8IVE3 1493 aa12.01□□□□□ -0.49
CLIP1-214ENST00000540539 SYCP2Q9BX26 1530 aa12□□□□□ -0.49
CLIP1-214ENST00000540539 CFAP74Q9C0B2 1584 aa12□□□□□ -0.49
CLIP1-214ENST00000540539 PPRC1Q5VV67 1664 aaKnown RBP12□□□□□ -0.49
CLIP1-214ENST00000540539 TRAK2O60296 914 aa12□□□□□ -0.49
CLIP1-214ENST00000540539 IRX5P78411 483 aaPredicted RBP12□□□□□ -0.49
CLIP1-214ENST00000540539 ABCC1P33527 1531 aa12□□□□□ -0.49
CLIP1-214ENST00000540539 DNMT1P26358 1616 aaKnown RBP11.99□□□□□ -0.49
CLIP1-214ENST00000540539 KIAA1107Q9UPP5 1409 aa11.99□□□□□ -0.49
CLIP1-214ENST00000540539 KTN1Q86UP2 1357 aaKnown RBP11.99□□□□□ -0.49
CLIP1-214ENST00000540539 HOMEZQ8IX15 550 aa11.99□□□□□ -0.49
CLIP1-214ENST00000540539 NEO1Q92859 1461 aa11.99□□□□□ -0.49
CLIP1-214ENST00000540539 MBD5Q9P267 1494 aa11.99□□□□□ -0.49
CLIP1-214ENST00000540539 SLC52A1Q9NWF4 448 aa11.99□□□□□ -0.49
CLIP1-214ENST00000540539 ARHGEF12Q9NZN5 1544 aa11.98□□□□□ -0.49
CLIP1-214ENST00000540539 ADGRL1O94910 1474 aa11.98□□□□□ -0.49
CLIP1-214ENST00000540539 DAPK1P53355 1430 aa11.98□□□□□ -0.49
CLIP1-214ENST00000540539 CBX1P83916 185 aa11.98□□□□□ -0.49
CLIP1-214ENST00000540539 ABCC5O15440 1437 aa11.98□□□□□ -0.49
CLIP1-214ENST00000540539 MSNP26038 577 aaKnown RBP11.98□□□□□ -0.49
CLIP1-214ENST00000540539 ARHGEF5Q12774 1597 aa11.98□□□□□ -0.49
CLIP1-214ENST00000540539 TEX14Q8IWB6 1497 aa11.98□□□□□ -0.49
CLIP1-214ENST00000540539 PTPRKQ15262 1439 aa11.98□□□□□ -0.49
CLIP1-214ENST00000540539 HSPA5P11021 654 aaKnown RBP11.97□□□□□ -0.49
CLIP1-214ENST00000540539 SLC20A2Q08357 652 aa11.97□□□□□ -0.49
CLIP1-214ENST00000540539 RCAN3Q9UKA8 241 aa11.97□□□□□ -0.49
CLIP1-214ENST00000540539 SCAPERQ9BY12 1400 aa11.97□□□□□ -0.49
CLIP1-214ENST00000540539 USP19O94966 1318 aa11.97□□□□□ -0.49
CLIP1-214ENST00000540539 BECN1Q14457 450 aa11.97□□□□□ -0.49
CLIP1-214ENST00000540539 DHX30Q7L2E3 1194 aaKnown RBP eCLIP11.97□□□□□ -0.49
CLIP1-214ENST00000540539 KDM2BQ8NHM5 1336 aa11.96□□□□□ -0.49
CLIP1-214ENST00000540539 CROCC2H7BZ55 1655 aa11.96□□□□□ -0.49
CLIP1-214ENST00000540539 CCDC141Q6ZP82 1450 aa11.96□□□□□ -0.5
CLIP1-214ENST00000540539 TULP1O00294 542 aaPredicted RBP11.96□□□□□ -0.5
CLIP1-214ENST00000540539 MMP14P50281 582 aa11.96□□□□□ -0.5
CLIP1-214ENST00000540539 CHIC2Q9UKJ5 165 aa11.96□□□□□ -0.5
CLIP1-214ENST00000540539 TPRNQ4KMQ1 711 aa11.95□□□□□ -0.5
CLIP1-214ENST00000540539 GAS2L3Q86XJ1 694 aa11.95□□□□□ -0.5
CLIP1-214ENST00000540539 AEBP1Q8IUX7 1158 aa11.95□□□□□ -0.5
CLIP1-214ENST00000540539 TRAPPC8Q9Y2L5 1435 aa11.95□□□□□ -0.5
CLIP1-214ENST00000540539 TSPY4P0CV99 314 aa11.94□□□□□ -0.5
CLIP1-214ENST00000540539 TSPY10P0CW01 314 aa11.94□□□□□ -0.5
CLIP1-214ENST00000540539 CCDC173Q0VFZ6 552 aa11.94□□□□□ -0.5
CLIP1-214ENST00000540539 WWC1Q8IX03 1113 aa11.94□□□□□ -0.5
CLIP1-214ENST00000540539 PPP1R9BQ96SB3 815 aa11.94□□□□□ -0.5
CLIP1-214ENST00000540539 AFAP1Q8N556 730 aa11.94□□□□□ -0.5
CLIP1-214ENST00000540539 CNKSR2Q8WXI2 1034 aa11.94□□□□□ -0.5
CLIP1-214ENST00000540539 HDAC5Q9UQL6 1122 aa11.94□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 10.7 ms