RNA–Protein interactions for RNA: ENST00000540438.5

USP28-208, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2

Gene USP28, Length 3,015 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-208ENST00000540438 APAF1O14727 1248 aa22.43■■□□□ 1.18
USP28-208ENST00000540438 ERICH6BQ5W0A0 696 aa22.43■■□□□ 1.18
USP28-208ENST00000540438 PRDM15P57071 1507 aaPredicted RBP22.42■■□□□ 1.18
USP28-208ENST00000540438 SPINK5Q9NQ38 1064 aaPredicted RBP22.42■■□□□ 1.18
USP28-208ENST00000540438 ATP7AQ04656 1500 aa22.41■■□□□ 1.18
USP28-208ENST00000540438 CLTCL1P53675 1640 aa22.41■■□□□ 1.18
USP28-208ENST00000540438 PAK3O75914 559 aaPredicted RBP22.41■■□□□ 1.18
USP28-208ENST00000540438 NBR1Q14596 966 aa22.41■■□□□ 1.18
USP28-208ENST00000540438 DMRT2Q9Y5R5 561 aa22.4■■□□□ 1.18
USP28-208ENST00000540438 UHRF1BP1LA0JNW5 1464 aa22.4■■□□□ 1.18
USP28-208ENST00000540438 PLEKHH1Q9ULM0 1364 aa22.39■■□□□ 1.17
USP28-208ENST00000540438 RNF123Q5XPI4 1314 aa22.38■■□□□ 1.17
USP28-208ENST00000540438 NOS1P29475 1434 aa22.38■■□□□ 1.17
USP28-208ENST00000540438 MLECQ14165 292 aa22.38■■□□□ 1.17
USP28-208ENST00000540438 CD109Q6YHK3 1445 aa22.36■■□□□ 1.17
USP28-208ENST00000540438 SCAF11Q99590 1463 aaKnown RBP22.33■■□□□ 1.17
USP28-208ENST00000540438 CABP2Q9NPB3 220 aa22.33■■□□□ 1.16
USP28-208ENST00000540438 RTEL1-TNFRSF6BF6WH68 1400 aa22.31■■□□□ 1.16
USP28-208ENST00000540438 CDCA8Q53HL2 280 aa22.31■■□□□ 1.16
USP28-208ENST00000540438 MADDQ8WXG6 1647 aa22.31■■□□□ 1.16
USP28-208ENST00000540438 BCAR3O75815 825 aa22.31■■□□□ 1.16
USP28-208ENST00000540438 FBXO31Q5XUX0 539 aaPredicted RBP22.31■■□□□ 1.16
USP28-208ENST00000540438 PTPRTO14522 1441 aa22.3■■□□□ 1.16
USP28-208ENST00000540438 FANCIQ9NVI1 1328 aa22.29■■□□□ 1.16
USP28-208ENST00000540438 CENPJQ9HC77 1338 aaPredicted RBP22.29■■□□□ 1.16
USP28-208ENST00000540438 TRPM2O94759 1503 aa22.29■■□□□ 1.16
USP28-208ENST00000540438 PLPPR3Q6T4P5 718 aa22.28■■□□□ 1.16
USP28-208ENST00000540438 MORC1Q86VD1 984 aa22.28■■□□□ 1.16
USP28-208ENST00000540438 BCL2L13Q9BXK5 485 aa22.27■■□□□ 1.16
USP28-208ENST00000540438 DUSP27Q5VZP5 1158 aa22.27■■□□□ 1.16
USP28-208ENST00000540438 SPHKAPQ2M3C7 1700 aa22.26■■□□□ 1.15
USP28-208ENST00000540438 FBLN1P23142 703 aa22.26■■□□□ 1.15
USP28-208ENST00000540438 GOLGA2Q08379 1002 aa22.26■■□□□ 1.15
USP28-208ENST00000540438 IDI1Q13907 227 aa22.26■■□□□ 1.15
USP28-208ENST00000540438 EIF2AK4Q9P2K8 1649 aaKnown RBP22.25■■□□□ 1.15
USP28-208ENST00000540438 NPATQ14207 1427 aa22.24■■□□□ 1.15
USP28-208ENST00000540438 PDE3BQ13370 1112 aa22.24■■□□□ 1.15
USP28-208ENST00000540438 EIF3AQ14152 1382 aaKnown RBP22.23■■□□□ 1.15
USP28-208ENST00000540438 MINK1Q8N4C8 1332 aaPredicted RBP22.23■■□□□ 1.15
USP28-208ENST00000540438 RGS3P49796 1198 aa22.23■■□□□ 1.15
USP28-208ENST00000540438 FRAT1Q92837 279 aaPredicted RBP22.22■■□□□ 1.15
USP28-208ENST00000540438 ERVK-7P63135 1459 aa22.21■■□□□ 1.15
USP28-208ENST00000540438 SRPK2P78362 688 aaKnown RBP22.21■■□□□ 1.15
USP28-208ENST00000540438 MTHFSP49914 203 aa22.2■■□□□ 1.14
USP28-208ENST00000540438 MYT1Q01538 1121 aa22.2■■□□□ 1.14
USP28-208ENST00000540438 STAG3Q9UJ98 1225 aa22.2■■□□□ 1.14
USP28-208ENST00000540438 KIDINS220Q9ULH0 1771 aa22.2■■□□□ 1.14
USP28-208ENST00000540438 ABCA9Q8IUA7 1624 aa22.19■■□□□ 1.14
USP28-208ENST00000540438 NSD3Q9BZ95 1437 aa22.19■■□□□ 1.14
USP28-208ENST00000540438 INO80Q9ULG1 1556 aaPredicted RBP22.19■■□□□ 1.14
USP28-208ENST00000540438 CEP152O94986 1710 aa22.19■■□□□ 1.14
USP28-208ENST00000540438 GGNBP2Q9H3C7 697 aa22.19■■□□□ 1.14
USP28-208ENST00000540438 BLMP54132 1417 aaPredicted RBP22.18■■□□□ 1.14
USP28-208ENST00000540438 MROH1Q8NDA8 1641 aa22.18■■□□□ 1.14
USP28-208ENST00000540438 ANP32AP39687 249 aaKnown RBP22.18■■□□□ 1.14
USP28-208ENST00000540438 ZNF518AQ6AHZ1 1483 aa22.18■■□□□ 1.14
USP28-208ENST00000540438 FAM69CQ0P6D2 419 aa22.17■■□□□ 1.14
USP28-208ENST00000540438 TNNQ9UQP3 1299 aa22.17■■□□□ 1.14
USP28-208ENST00000540438 PDE4AP27815 886 aa22.17■■□□□ 1.14
USP28-208ENST00000540438 NOP58Q9Y2X3 529 aaKnown RBP22.17■■□□□ 1.14
USP28-208ENST00000540438 TET3O43151 1660 aa22.17■■□□□ 1.14
USP28-208ENST00000540438 PPRC1Q5VV67 1664 aaKnown RBP22.17■■□□□ 1.14
USP28-208ENST00000540438 PPM1GO15355 546 aaPredicted RBP22.17■■□□□ 1.14
USP28-208ENST00000540438 C14orf93Q9H972 538 aaKnown RBP22.17■■□□□ 1.14
USP28-208ENST00000540438 ASXL1Q8IXJ9 1541 aa22.16■■□□□ 1.14
USP28-208ENST00000540438 SLC4A3P48751 1232 aa22.16■■□□□ 1.14
USP28-208ENST00000540438 YEATS2Q9ULM3 1422 aa22.16■■□□□ 1.14
USP28-208ENST00000540438 CLUAP1Q96AJ1 413 aa22.15■■□□□ 1.14
USP28-208ENST00000540438 ABCA6Q8N139 1617 aa22.15■■□□□ 1.14
USP28-208ENST00000540438 RNF17Q9BXT8 1623 aaKnown RBP22.15■■□□□ 1.14
USP28-208ENST00000540438 MROH2AA6NES4 1674 aa22.15■■□□□ 1.14
USP28-208ENST00000540438 LAS1LQ9Y4W2 734 aaKnown RBP22.15■■□□□ 1.14
USP28-208ENST00000540438 SLFN5Q08AF3 891 aa22.15■■□□□ 1.14
USP28-208ENST00000540438 U2SURPO15042 1029 aaKnown RBP22.14■■□□□ 1.13
USP28-208ENST00000540438 CANXP27824 592 aaKnown RBP22.14■■□□□ 1.13
USP28-208ENST00000540438 PANK1Q8TE04 598 aa22.14■■□□□ 1.13
USP28-208ENST00000540438 IQGAP1P46940 1657 aa22.13■■□□□ 1.13
USP28-208ENST00000540438 U2AF1L5P0DN76 240 aaPredicted RBP22.12■■□□□ 1.13
USP28-208ENST00000540438 U2AF1Q01081 240 aaKnown RBP eCLIP22.12■■□□□ 1.13
USP28-208ENST00000540438 POGZQ7Z3K3 1410 aa22.12■■□□□ 1.13
USP28-208ENST00000540438 POGKQ9P215 609 aa22.11■■□□□ 1.13
USP28-208ENST00000540438 COG6Q9Y2V7 657 aa22.11■■□□□ 1.13
USP28-208ENST00000540438 TCP11L2Q8N4U5 519 aa22.1■■□□□ 1.13
USP28-208ENST00000540438 EFCAB6Q5THR3 1501 aa22.1■■□□□ 1.13
USP28-208ENST00000540438 PRAM1Q96QH2 718 aa22.1■■□□□ 1.13
USP28-208ENST00000540438 SUGP2Q8IX01 1082 aaKnown RBP eCLIP22.09■■□□□ 1.13
USP28-208ENST00000540438 ZBTB47Q9UFB7 747 aaPredicted RBP22.09■■□□□ 1.13
USP28-208ENST00000540438 DEPDC5O75140 1603 aa22.09■■□□□ 1.13
USP28-208ENST00000540438 WAPLQ7Z5K2 1190 aa22.09■■□□□ 1.13
USP28-208ENST00000540438 LAMC1P11047 1609 aa22.08■■□□□ 1.13
USP28-208ENST00000540438 MAP3K4Q9Y6R4 1608 aa22.08■■□□□ 1.13
USP28-208ENST00000540438 WWC1Q8IX03 1113 aa22.08■■□□□ 1.12
USP28-208ENST00000540438 ZMYM4Q5VZL5 1548 aa22.08■■□□□ 1.12
USP28-208ENST00000540438 ZNF521Q96K83 1311 aa22.08■■□□□ 1.12
USP28-208ENST00000540438 VWDEQ8N2E2 1590 aa22.07■■□□□ 1.12
USP28-208ENST00000540438 VGFO15240 615 aaPredicted RBP22.06■■□□□ 1.12
USP28-208ENST00000540438 IPO9Q96P70 1041 aaKnown RBP22.06■■□□□ 1.12
USP28-208ENST00000540438 NUTM2FA1L443 756 aa22.06■■□□□ 1.12
USP28-208ENST00000540438 BCL11AQ9H165 835 aa22.06■■□□□ 1.12
USP28-208ENST00000540438 ARAP3Q8WWN8 1544 aa22.06■■□□□ 1.12
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms