RNA–Protein interactions for RNA: ENST00000539548.6

CDH13-204, Transcript of cadherin 13, humanhuman

TSL 2

Gene CDH13, Length 2,199 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH13-204ENST00000539548 AMER1Q5JTC6 1135 aaPredicted RBP12.69□□□□□ -0.38
CDH13-204ENST00000539548 DUSP27Q5VZP5 1158 aa12.69□□□□□ -0.38
CDH13-204ENST00000539548 ABCC2Q92887 1545 aa12.69□□□□□ -0.38
CDH13-204ENST00000539548 WDR43Q15061 677 aaKnown RBP eCLIP12.69□□□□□ -0.38
CDH13-204ENST00000539548 PLCH2O75038 1416 aa12.68□□□□□ -0.38
CDH13-204ENST00000539548 SCAPERQ9BY12 1400 aa12.68□□□□□ -0.38
CDH13-204ENST00000539548 SPHKAPQ2M3C7 1700 aa12.68□□□□□ -0.38
CDH13-204ENST00000539548 PLEKHH1Q9ULM0 1364 aa12.68□□□□□ -0.38
CDH13-204ENST00000539548 C20orf194Q5TEA3 1177 aa12.68□□□□□ -0.38
CDH13-204ENST00000539548 CENPQQ7L2Z9 268 aaPredicted RBP12.68□□□□□ -0.38
CDH13-204ENST00000539548 NPC1L1Q9UHC9 1359 aa12.68□□□□□ -0.38
CDH13-204ENST00000539548 CEP152O94986 1710 aa12.67□□□□□ -0.38
CDH13-204ENST00000539548 PIK3C2GO75747 1445 aa12.67□□□□□ -0.38
CDH13-204ENST00000539548 ASXL1Q8IXJ9 1541 aa12.67□□□□□ -0.38
CDH13-204ENST00000539548 GOLGA2Q08379 1002 aa12.67□□□□□ -0.38
CDH13-204ENST00000539548 SCAF11Q99590 1463 aaKnown RBP12.66□□□□□ -0.38
CDH13-204ENST00000539548 EFCAB2Q5VUJ9 269 aa12.66□□□□□ -0.38
CDH13-204ENST00000539548 TRPM2O94759 1503 aa12.66□□□□□ -0.38
CDH13-204ENST00000539548 NEFMP07197 916 aa12.66□□□□□ -0.38
CDH13-204ENST00000539548 GOLGA6L2Q8N9W4 650 aaPredicted RBP12.66□□□□□ -0.38
CDH13-204ENST00000539548 LAS1LQ9Y4W2 734 aaKnown RBP12.66□□□□□ -0.38
CDH13-204ENST00000539548 TRMT2AQ8IZ69 625 aaKnown RBP12.65□□□□□ -0.38
CDH13-204ENST00000539548 ABCC1P33527 1531 aa12.65□□□□□ -0.38
CDH13-204ENST00000539548 MYOM1P52179 1685 aa12.65□□□□□ -0.39
CDH13-204ENST00000539548 PTPRTO14522 1441 aa12.65□□□□□ -0.39
CDH13-204ENST00000539548 SLFN5Q08AF3 891 aa12.64□□□□□ -0.39
CDH13-204ENST00000539548 KIAA1210Q9ULL0 1709 aa12.64□□□□□ -0.39
CDH13-204ENST00000539548 SKAP1Q86WV1 359 aa12.64□□□□□ -0.39
CDH13-204ENST00000539548 RTEL1-TNFRSF6BF6WH68 1400 aa12.63□□□□□ -0.39
CDH13-204ENST00000539548 TRAPPC8Q9Y2L5 1435 aa12.63□□□□□ -0.39
CDH13-204ENST00000539548 CLTCL1P53675 1640 aa12.62□□□□□ -0.39
CDH13-204ENST00000539548 FAM161AQ3B820 660 aa12.62□□□□□ -0.39
CDH13-204ENST00000539548 DEPDC5O75140 1603 aa12.61□□□□□ -0.39
CDH13-204ENST00000539548 EIF3AQ14152 1382 aaKnown RBP12.61□□□□□ -0.39
CDH13-204ENST00000539548 KDM5AP29375 1690 aaKnown RBP12.61□□□□□ -0.39
CDH13-204ENST00000539548 SLC24A1O60721 1099 aa12.61□□□□□ -0.39
CDH13-204ENST00000539548 ERCC6L2Q5T890 1561 aa12.61□□□□□ -0.39
CDH13-204ENST00000539548 ZCCHC11Q5TAX3 1644 aaKnown RBP12.61□□□□□ -0.39
CDH13-204ENST00000539548 TET3O43151 1660 aa12.61□□□□□ -0.39
CDH13-204ENST00000539548 NEURL4Q96JN8 1562 aa12.6□□□□□ -0.39
CDH13-204ENST00000539548 NGEFQ8N5V2 710 aa12.6□□□□□ -0.39
CDH13-204ENST00000539548 SPAG9O60271 1321 aaKnown RBP12.6□□□□□ -0.39
CDH13-204ENST00000539548 UHRF1BP1LA0JNW5 1464 aa12.59□□□□□ -0.39
CDH13-204ENST00000539548 C8orf34Q49A92 452 aa12.59□□□□□ -0.39
CDH13-204ENST00000539548 NKTRP30414 1462 aaKnown RBP12.59□□□□□ -0.39
CDH13-204ENST00000539548 ARAP3Q8WWN8 1544 aa12.59□□□□□ -0.39
CDH13-204ENST00000539548 ZFYVE16Q7Z3T8 1539 aa12.58□□□□□ -0.4
CDH13-204ENST00000539548 VWDEQ8N2E2 1590 aa12.57□□□□□ -0.4
CDH13-204ENST00000539548 E9PSI1 815 aa12.57□□□□□ -0.4
CDH13-204ENST00000539548 APAF1O14727 1248 aa12.56□□□□□ -0.4
CDH13-204ENST00000539548 CCDC146Q8IYE0 955 aa12.56□□□□□ -0.4
CDH13-204ENST00000539548 SPINK5Q9NQ38 1064 aaPredicted RBP12.56□□□□□ -0.4
CDH13-204ENST00000539548 DAXXQ9UER7 740 aaPredicted RBP12.56□□□□□ -0.4
CDH13-204ENST00000539548 KANK1Q14678 1352 aa12.55□□□□□ -0.4
CDH13-204ENST00000539548 NFKBIBQ15653 356 aa12.55□□□□□ -0.4
CDH13-204ENST00000539548 MAP3K4Q9Y6R4 1608 aa12.55□□□□□ -0.4
CDH13-204ENST00000539548 ERVK-7P63135 1459 aa12.55□□□□□ -0.4
CDH13-204ENST00000539548 AFAP1Q8N556 730 aa12.54□□□□□ -0.4
CDH13-204ENST00000539548 MYOM2P54296 1465 aa12.54□□□□□ -0.4
CDH13-204ENST00000539548 VIRMAQ69YN4 1812 aaKnown RBP12.53□□□□□ -0.4
CDH13-204ENST00000539548 BCAR3O75815 825 aa12.53□□□□□ -0.4
CDH13-204ENST00000539548 PDE3AQ14432 1141 aa12.53□□□□□ -0.4
CDH13-204ENST00000539548 GSE1Q14687 1217 aa12.53□□□□□ -0.4
CDH13-204ENST00000539548 CARD14Q9BXL6 1004 aa12.53□□□□□ -0.4
CDH13-204ENST00000539548 ABCA6Q8N139 1617 aa12.52□□□□□ -0.4
CDH13-204ENST00000539548 NINLQ9Y2I6 1382 aa12.52□□□□□ -0.4
CDH13-204ENST00000539548 KIF1BO60333 1816 aa12.52□□□□□ -0.4
CDH13-204ENST00000539548 SLC4A3P48751 1232 aa12.52□□□□□ -0.4
CDH13-204ENST00000539548 INO80Q9ULG1 1556 aaPredicted RBP12.52□□□□□ -0.41
CDH13-204ENST00000539548 POLR3AO14802 1390 aaPredicted RBP12.52□□□□□ -0.41
CDH13-204ENST00000539548 IFT172Q9UG01 1749 aa12.52□□□□□ -0.41
CDH13-204ENST00000539548 CGNL1Q0VF96 1302 aa12.52□□□□□ -0.41
CDH13-204ENST00000539548 RGS3P49796 1198 aa12.52□□□□□ -0.41
CDH13-204ENST00000539548 CFAP70Q5T0N1 1121 aa12.52□□□□□ -0.41
CDH13-204ENST00000539548 AEBP2Q6ZN18 517 aaPredicted RBP12.52□□□□□ -0.41
CDH13-204ENST00000539548 MYO3AQ8NEV4 1616 aa12.52□□□□□ -0.41
CDH13-204ENST00000539548 ATP7AQ04656 1500 aa12.51□□□□□ -0.41
CDH13-204ENST00000539548 IL27Q8NEV9 243 aa12.5□□□□□ -0.41
CDH13-204ENST00000539548 SBNO2Q9Y2G9 1366 aa12.5□□□□□ -0.41
CDH13-204ENST00000539548 DMRT2Q9Y5R5 561 aa12.5□□□□□ -0.41
CDH13-204ENST00000539548 IGHDP01880 384 aa12.49□□□□□ -0.41
CDH13-204ENST00000539548 ADGRF5Q8IZF2 1346 aa12.49□□□□□ -0.41
CDH13-204ENST00000539548 MROH1Q8NDA8 1641 aa12.49□□□□□ -0.41
CDH13-204ENST00000539548 WWC1Q8IX03 1113 aa12.49□□□□□ -0.41
CDH13-204ENST00000539548 NRXN1Q9ULB1 1477 aa12.49□□□□□ -0.41
CDH13-204ENST00000539548 CENPJQ9HC77 1338 aaPredicted RBP12.48□□□□□ -0.41
CDH13-204ENST00000539548 ABCA9Q8IUA7 1624 aa12.48□□□□□ -0.41
CDH13-204ENST00000539548 KIF3BO15066 747 aa12.48□□□□□ -0.41
CDH13-204ENST00000539548 AAMPQ13685 434 aa12.47□□□□□ -0.41
CDH13-204ENST00000539548 MAPK8IP3Q9UPT6 1336 aa12.47□□□□□ -0.41
CDH13-204ENST00000539548 SHPRHQ149N8 1683 aa12.47□□□□□ -0.41
CDH13-204ENST00000539548 CLUAP1Q96AJ1 413 aa12.47□□□□□ -0.41
CDH13-204ENST00000539548 SETBP1Q9Y6X0 1596 aa12.47□□□□□ -0.41
CDH13-204ENST00000539548 UGGT1Q9NYU2 1555 aa12.46□□□□□ -0.41
CDH13-204ENST00000539548 USP19O94966 1318 aa12.46□□□□□ -0.41
CDH13-204ENST00000539548 FANCAO15360 1455 aa12.46□□□□□ -0.42
CDH13-204ENST00000539548 MROH2AA6NES4 1674 aa12.45□□□□□ -0.42
CDH13-204ENST00000539548 EFCAB6Q5THR3 1501 aa12.45□□□□□ -0.42
CDH13-204ENST00000539548 FRAT1Q92837 279 aaPredicted RBP12.45□□□□□ -0.42
CDH13-204ENST00000539548 RUNDC1Q96C34 613 aa12.45□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 9.5 ms