RNA–Protein interactions for RNA: ENST00000538654.5

SNHG1-209, Transcript of small nucleolar RNA host gene 1, humanhuman

TSL 2

Gene SNHG1, Length 2,768 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNHG1-209ENST00000538654 SKAP1Q86WV1 359 aa11.63□□□□□ -0.55
SNHG1-209ENST00000538654 FAM177A1Q8N128 213 aaPredicted RBP11.63□□□□□ -0.55
SNHG1-209ENST00000538654 ZNF644Q9H582 1327 aaPredicted RBP11.63□□□□□ -0.55
SNHG1-209ENST00000538654 KIAA0586Q9BVV6 1533 aa11.62□□□□□ -0.55
SNHG1-209ENST00000538654 KDM5DQ9BY66 1539 aa11.62□□□□□ -0.55
SNHG1-209ENST00000538654 CEP170Q5SW79 1584 aa11.62□□□□□ -0.55
SNHG1-209ENST00000538654 RGL2O15211 777 aa11.62□□□□□ -0.55
SNHG1-209ENST00000538654 PER1O15534 1290 aaPredicted RBP11.62□□□□□ -0.55
SNHG1-209ENST00000538654 ZNF608Q9ULD9 1512 aaPredicted RBP11.61□□□□□ -0.55
SNHG1-209ENST00000538654 ANKRD50Q9ULJ7 1429 aa11.61□□□□□ -0.55
SNHG1-209ENST00000538654 C20orf194Q5TEA3 1177 aa11.61□□□□□ -0.55
SNHG1-209ENST00000538654 LAMC1P11047 1609 aa11.6□□□□□ -0.55
SNHG1-209ENST00000538654 TRPM1Q7Z4N2 1603 aa11.6□□□□□ -0.55
SNHG1-209ENST00000538654 DNAJC5Q9H3Z4 198 aa11.6□□□□□ -0.55
SNHG1-209ENST00000538654 PBRM1Q86U86 1689 aa11.59□□□□□ -0.55
SNHG1-209ENST00000538654 CFDP1Q9UEE9 299 aaPredicted RBP11.59□□□□□ -0.55
SNHG1-209ENST00000538654 COL17A1Q9UMD9 1497 aaPredicted RBP11.59□□□□□ -0.55
SNHG1-209ENST00000538654 RAPGEF6Q8TEU7 1601 aa11.59□□□□□ -0.55
SNHG1-209ENST00000538654 MAPK8IP2Q13387 824 aaPredicted RBP11.58□□□□□ -0.56
SNHG1-209ENST00000538654 CERS3Q8IU89 383 aa11.58□□□□□ -0.56
SNHG1-209ENST00000538654 PRDM10Q9NQV6 1147 aa11.58□□□□□ -0.56
SNHG1-209ENST00000538654 CLASP1Q7Z460 1538 aa11.58□□□□□ -0.56
SNHG1-209ENST00000538654 VASPP50552 380 aaPredicted RBP11.58□□□□□ -0.56
SNHG1-209ENST00000538654 NUP155O75694 1391 aa11.58□□□□□ -0.56
SNHG1-209ENST00000538654 ADCY10Q96PN6 1610 aa11.58□□□□□ -0.56
SNHG1-209ENST00000538654 MAPK8IP3Q9UPT6 1336 aa11.57□□□□□ -0.56
SNHG1-209ENST00000538654 RGS3P49796 1198 aa11.57□□□□□ -0.56
SNHG1-209ENST00000538654 DUSP27Q5VZP5 1158 aa11.57□□□□□ -0.56
SNHG1-209ENST00000538654 POGKQ9P215 609 aa11.57□□□□□ -0.56
SNHG1-209ENST00000538654 NUP153P49790 1475 aaKnown RBP11.57□□□□□ -0.56
SNHG1-209ENST00000538654 SHANK2Q9UPX8 1470 aa11.57□□□□□ -0.56
SNHG1-209ENST00000538654 TROQ12816 1431 aaPredicted RBP11.57□□□□□ -0.56
SNHG1-209ENST00000538654 GOLGA2Q08379 1002 aa11.56□□□□□ -0.56
SNHG1-209ENST00000538654 RRAGDQ9NQL2 400 aaPredicted RBP11.56□□□□□ -0.56
SNHG1-209ENST00000538654 ADAMTS12P58397 1594 aa11.56□□□□□ -0.56
SNHG1-209ENST00000538654 EIF4G3O43432 1585 aaKnown RBP11.56□□□□□ -0.56
SNHG1-209ENST00000538654 PRAG1Q86YV5 1406 aa11.56□□□□□ -0.56
SNHG1-209ENST00000538654 GPATCH8Q9UKJ3 1502 aaKnown RBP11.55□□□□□ -0.56
SNHG1-209ENST00000538654 GPRASP1Q5JY77 1395 aa11.55□□□□□ -0.56
SNHG1-209ENST00000538654 TARBP1Q13395 1621 aaKnown RBP11.55□□□□□ -0.56
SNHG1-209ENST00000538654 RRP9O43818 475 aaKnown RBP11.55□□□□□ -0.56
SNHG1-209ENST00000538654 CC2D1BQ5T0F9 858 aaKnown RBP11.55□□□□□ -0.56
SNHG1-209ENST00000538654 PNNQ9H307 717 aaKnown RBP11.55□□□□□ -0.56
SNHG1-209ENST00000538654 KIAA0556O60303 1618 aa11.55□□□□□ -0.56
SNHG1-209ENST00000538654 WDR43Q15061 677 aaKnown RBP eCLIP11.55□□□□□ -0.56
SNHG1-209ENST00000538654 CLCN1P35523 988 aa11.54□□□□□ -0.56
SNHG1-209ENST00000538654 GTF3C5Q9Y5Q8 519 aaPredicted RBP11.54□□□□□ -0.56
SNHG1-209ENST00000538654 PRDM15P57071 1507 aaPredicted RBP11.54□□□□□ -0.56
SNHG1-209ENST00000538654 PTPRGP23470 1445 aa11.54□□□□□ -0.56
SNHG1-209ENST00000538654 ZNF521Q96K83 1311 aa11.54□□□□□ -0.56
SNHG1-209ENST00000538654 ZMYM3Q14202 1370 aa11.54□□□□□ -0.56
SNHG1-209ENST00000538654 NINLQ9Y2I6 1382 aa11.54□□□□□ -0.56
SNHG1-209ENST00000538654 GOLGA6L3A6NEY3 463 aa11.54□□□□□ -0.56
SNHG1-209ENST00000538654 UPF2Q9HAU5 1272 aaKnown RBP11.54□□□□□ -0.56
SNHG1-209ENST00000538654 ADAMTS8Q9UP79 889 aa11.53□□□□□ -0.56
SNHG1-209ENST00000538654 EIF2AK4Q9P2K8 1649 aaKnown RBP11.53□□□□□ -0.56
SNHG1-209ENST00000538654 USP19O94966 1318 aa11.53□□□□□ -0.56
SNHG1-209ENST00000538654 HSP90AA1P07900 732 aaKnown RBP11.53□□□□□ -0.56
SNHG1-209ENST00000538654 NAP1L5Q96NT1 182 aaPredicted RBP11.52□□□□□ -0.56
SNHG1-209ENST00000538654 PANK3Q9H999 370 aa11.52□□□□□ -0.56
SNHG1-209ENST00000538654 PLEKHH1Q9ULM0 1364 aa11.52□□□□□ -0.57
SNHG1-209ENST00000538654 ERBINQ96RT1 1412 aa11.52□□□□□ -0.57
SNHG1-209ENST00000538654 TMF1P82094 1093 aa11.52□□□□□ -0.57
SNHG1-209ENST00000538654 HSP90AA2PQ14568 343 aaPredicted RBP11.52□□□□□ -0.57
SNHG1-209ENST00000538654 CCDC82Q8N4S0 544 aa11.52□□□□□ -0.57
SNHG1-209ENST00000538654 SLC24A3Q9HC58 644 aa11.52□□□□□ -0.57
SNHG1-209ENST00000538654 CGNL1Q0VF96 1302 aa11.52□□□□□ -0.57
SNHG1-209ENST00000538654 ECM2O94769 699 aaPredicted RBP11.51□□□□□ -0.57
SNHG1-209ENST00000538654 SLFN5Q08AF3 891 aa11.51□□□□□ -0.57
SNHG1-209ENST00000538654 NKTRP30414 1462 aaKnown RBP11.51□□□□□ -0.57
SNHG1-209ENST00000538654 CCDC144AA2RUR9 1427 aa11.51□□□□□ -0.57
SNHG1-209ENST00000538654 ANTXR1Q9H6X2 564 aa11.51□□□□□ -0.57
SNHG1-209ENST00000538654 BCCIPQ9P287 314 aaKnown RBP eCLIP11.51□□□□□ -0.57
SNHG1-209ENST00000538654 C9orf84Q5VXU9 1444 aa11.51□□□□□ -0.57
SNHG1-209ENST00000538654 FSD2A1L4K1 749 aa11.5□□□□□ -0.57
SNHG1-209ENST00000538654 CHGAP10645 457 aaKnown RBP11.5□□□□□ -0.57
SNHG1-209ENST00000538654 PDS5BQ9NTI5 1447 aa11.5□□□□□ -0.57
SNHG1-209ENST00000538654 AAMPQ13685 434 aa11.5□□□□□ -0.57
SNHG1-209ENST00000538654 TRMT2AQ8IZ69 625 aaKnown RBP11.5□□□□□ -0.57
SNHG1-209ENST00000538654 NGEFQ8N5V2 710 aa11.5□□□□□ -0.57
SNHG1-209ENST00000538654 CDC42BPAQ5VT25 1732 aa11.5□□□□□ -0.57
SNHG1-209ENST00000538654 PRG4Q92954 1404 aaPredicted RBP11.5□□□□□ -0.57
SNHG1-209ENST00000538654 DISP1Q96F81 1524 aa11.5□□□□□ -0.57
SNHG1-209ENST00000538654 PDE3AQ14432 1141 aa11.5□□□□□ -0.57
SNHG1-209ENST00000538654 LMOD2Q6P5Q4 547 aa11.5□□□□□ -0.57
SNHG1-209ENST00000538654 ISY1Q9ULR0 285 aaKnown RBP11.5□□□□□ -0.57
SNHG1-209ENST00000538654 DISP3Q9P2K9 1392 aa11.49□□□□□ -0.57
SNHG1-209ENST00000538654 TESK2Q96S53 571 aa11.49□□□□□ -0.57
SNHG1-209ENST00000538654 SLKQ9H2G2 1235 aaPredicted RBP11.49□□□□□ -0.57
SNHG1-209ENST00000538654 ZNF777Q9ULD5 760 aaPredicted RBP11.49□□□□□ -0.57
SNHG1-209ENST00000538654 XRCC6P12956 609 aaKnown RBP eCLIP11.49□□□□□ -0.57
SNHG1-209ENST00000538654 NLRP1Q9C000 1473 aa11.49□□□□□ -0.57
SNHG1-209ENST00000538654 MFAP1P55081 439 aaKnown RBP11.48□□□□□ -0.57
SNHG1-209ENST00000538654 NUP160Q12769 1436 aa11.48□□□□□ -0.57
SNHG1-209ENST00000538654 MRE11P49959 708 aa11.48□□□□□ -0.57
SNHG1-209ENST00000538654 ABCC2Q92887 1545 aa11.47□□□□□ -0.57
SNHG1-209ENST00000538654 PPP2R1AP30153 589 aa11.47□□□□□ -0.57
SNHG1-209ENST00000538654 RSPH4AQ5TD94 716 aa11.47□□□□□ -0.57
SNHG1-209ENST00000538654 ABCC10Q5T3U5 1492 aa11.47□□□□□ -0.57
SNHG1-209ENST00000538654 PIK3C2GO75747 1445 aa11.47□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms