RNA–Protein interactions for RNA: ENST00000537706.5

USP28-205, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 1,900 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-205ENST00000537706 CAMSAP2Q08AD1 1489 aa14.86□□□□□ -0.03
USP28-205ENST00000537706 EFCAB6Q5THR3 1501 aa14.85□□□□□ -0.03
USP28-205ENST00000537706 ARHGAP31Q2M1Z3 1444 aa14.85□□□□□ -0.03
USP28-205ENST00000537706 KDM5AP29375 1690 aaKnown RBP14.84□□□□□ -0.03
USP28-205ENST00000537706 HDGFP51858 240 aaKnown RBP14.83□□□□□ -0.04
USP28-205ENST00000537706 C19orf44Q9H6X5 657 aa14.83□□□□□ -0.04
USP28-205ENST00000537706 CEP162Q5TB80 1403 aa14.82□□□□□ -0.04
USP28-205ENST00000537706 EIF2AK4Q9P2K8 1649 aaKnown RBP14.82□□□□□ -0.04
USP28-205ENST00000537706 EHBP1L1Q8N3D4 1523 aa14.82□□□□□ -0.04
USP28-205ENST00000537706 TET3O43151 1660 aa14.82□□□□□ -0.04
USP28-205ENST00000537706 LRRC59Q96AG4 307 aaKnown RBP14.82□□□□□ -0.04
USP28-205ENST00000537706 PIK3C2BO00750 1634 aa14.81□□□□□ -0.04
USP28-205ENST00000537706 PPP1R15AO75807 674 aaPredicted RBP14.8□□□□□ -0.04
USP28-205ENST00000537706 TRPC5Q9UL62 973 aaPredicted RBP14.79□□□□□ -0.04
USP28-205ENST00000537706 ARHGEF5Q12774 1597 aa14.79□□□□□ -0.04
USP28-205ENST00000537706 BRINP3Q76B58 766 aa14.78□□□□□ -0.04
USP28-205ENST00000537706 KANK1Q14678 1352 aa14.78□□□□□ -0.04
USP28-205ENST00000537706 SETD5Q9C0A6 1442 aa14.78□□□□□ -0.04
USP28-205ENST00000537706 IDI1Q13907 227 aa14.78□□□□□ -0.04
USP28-205ENST00000537706 CEP152O94986 1710 aa14.77□□□□□ -0.04
USP28-205ENST00000537706 DIP2AQ14689 1571 aa14.76□□□□□ -0.05
USP28-205ENST00000537706 USP21Q9UK80 565 aa14.76□□□□□ -0.05
USP28-205ENST00000537706 CFAP65Q6ZU64 1925 aaKnown RBP14.75□□□□□ -0.05
USP28-205ENST00000537706 PLEKHG1Q9ULL1 1385 aa14.75□□□□□ -0.05
USP28-205ENST00000537706 SF3B2Q13435 895 aaKnown RBP14.74□□□□□ -0.05
USP28-205ENST00000537706 TBX22Q9Y458 520 aa14.74□□□□□ -0.05
USP28-205ENST00000537706 MROH1Q8NDA8 1641 aa14.74□□□□□ -0.05
USP28-205ENST00000537706 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.74□□□□□ -0.05
USP28-205ENST00000537706 ADAMTS2O95450 1211 aa14.73□□□□□ -0.05
USP28-205ENST00000537706 SLC52A1Q9NWF4 448 aa14.73□□□□□ -0.05
USP28-205ENST00000537706 DUOX2Q9NRD8 1548 aa14.72□□□□□ -0.05
USP28-205ENST00000537706 MAST1Q9Y2H9 1570 aa14.72□□□□□ -0.05
USP28-205ENST00000537706 PNPLA6Q8IY17 1366 aa14.72□□□□□ -0.05
USP28-205ENST00000537706 ADGRB3O60242 1522 aa14.71□□□□□ -0.05
USP28-205ENST00000537706 LRP5O75197 1615 aa14.71□□□□□ -0.05
USP28-205ENST00000537706 ABCF1Q8NE71 845 aaKnown RBP eCLIP14.71□□□□□ -0.05
USP28-205ENST00000537706 DCCP43146 1447 aa14.7□□□□□ -0.06
USP28-205ENST00000537706 ASXL1Q8IXJ9 1541 aa14.7□□□□□ -0.06
USP28-205ENST00000537706 SIPA1L2Q9P2F8 1722 aaPredicted RBP14.7□□□□□ -0.06
USP28-205ENST00000537706 CHD2O14647 1828 aaKnown RBP14.69□□□□□ -0.06
USP28-205ENST00000537706 PIK3R4Q99570 1358 aa14.69□□□□□ -0.06
USP28-205ENST00000537706 BLMP54132 1417 aaPredicted RBP14.69□□□□□ -0.06
USP28-205ENST00000537706 ERBINQ96RT1 1412 aa14.67□□□□□ -0.06
USP28-205ENST00000537706 RIMS2Q9UQ26 1411 aa14.67□□□□□ -0.06
USP28-205ENST00000537706 YY1P25490 414 aa14.66□□□□□ -0.06
USP28-205ENST00000537706 ATRNO75882 1429 aa14.66□□□□□ -0.06
USP28-205ENST00000537706 FNBP4Q8N3X1 1017 aaPredicted RBP14.65□□□□□ -0.06
USP28-205ENST00000537706 PTCH1Q13635 1447 aa14.65□□□□□ -0.06
USP28-205ENST00000537706 KIF15Q9NS87 1388 aa14.65□□□□□ -0.06
USP28-205ENST00000537706 ZFYVE9O95405 1425 aa14.63□□□□□ -0.07
USP28-205ENST00000537706 AMOTL2Q9Y2J4 779 aa14.63□□□□□ -0.07
USP28-205ENST00000537706 NOS1P29475 1434 aa14.63□□□□□ -0.07
USP28-205ENST00000537706 NHSL1Q5SYE7 1610 aa14.62□□□□□ -0.07
USP28-205ENST00000537706 MST1RQ04912 1400 aa14.61□□□□□ -0.07
USP28-205ENST00000537706 LMTK2Q8IWU2 1503 aa14.61□□□□□ -0.07
USP28-205ENST00000537706 DEFB132Q7Z7B7 95 aa14.61□□□□□ -0.07
USP28-205ENST00000537706 RRP7BPQ9NSQ0 103 aa14.6□□□□□ -0.07
USP28-205ENST00000537706 CHGAP10645 457 aaKnown RBP14.6□□□□□ -0.07
USP28-205ENST00000537706 GJD4Q96KN9 370 aaPredicted RBP14.6□□□□□ -0.07
USP28-205ENST00000537706 MYOM3Q5VTT5 1437 aa14.6□□□□□ -0.07
USP28-205ENST00000537706 TRPM2O94759 1503 aa14.59□□□□□ -0.07
USP28-205ENST00000537706 DCAF8L1A6NGE4 600 aa14.59□□□□□ -0.07
USP28-205ENST00000537706 HRCP23327 699 aa14.59□□□□□ -0.07
USP28-205ENST00000537706 DDX17Q92841 729 aaKnown RBP14.58□□□□□ -0.07
USP28-205ENST00000537706 PSDA5PKW4 1024 aaPredicted RBP14.58□□□□□ -0.08
USP28-205ENST00000537706 IFFO2Q5TF58 517 aa14.58□□□□□ -0.08
USP28-205ENST00000537706 ADAMTS13Q76LX8 1427 aa14.57□□□□□ -0.08
USP28-205ENST00000537706 BAG6P46379 1132 aa14.57□□□□□ -0.08
USP28-205ENST00000537706 RPRD2Q5VT52 1461 aaKnown RBP14.56□□□□□ -0.08
USP28-205ENST00000537706 UNC13BO14795 1591 aa14.54□□□□□ -0.08
USP28-205ENST00000537706 SOS2Q07890 1332 aaPredicted RBP14.53□□□□□ -0.08
USP28-205ENST00000537706 SRCAPQ6ZRS2 3230 aa14.53□□□□□ -0.08
USP28-205ENST00000537706 BCL9LQ86UU0 1499 aa14.51□□□□□ -0.09
USP28-205ENST00000537706 PTPRUQ92729 1446 aa14.51□□□□□ -0.09
USP28-205ENST00000537706 ADGRL3Q9HAR2 1447 aa14.51□□□□□ -0.09
USP28-205ENST00000537706 ANKRD30AQ9BXX3 1397 aa14.49□□□□□ -0.09
USP28-205ENST00000537706 UNC5CLQ8IV45 518 aa14.49□□□□□ -0.09
USP28-205ENST00000537706 C1orf167Q5SNV9 1468 aa14.49□□□□□ -0.09
USP28-205ENST00000537706 GCC2Q8IWJ2 1684 aa14.48□□□□□ -0.09
USP28-205ENST00000537706 SEPT12Q8IYM1 358 aa14.48□□□□□ -0.09
USP28-205ENST00000537706 TMEM131LA2VDJ0 1609 aa14.48□□□□□ -0.09
USP28-205ENST00000537706 KRT27Q7Z3Y8 459 aa14.47□□□□□ -0.09
USP28-205ENST00000537706 RALGAPBQ86X10 1494 aa14.47□□□□□ -0.09
USP28-205ENST00000537706 R3HDM1Q15032 1099 aaKnown RBP14.46□□□□□ -0.09
USP28-205ENST00000537706 ABCC5O15440 1437 aa14.45□□□□□ -0.1
USP28-205ENST00000537706 SENP3-EIF4A1A0A087X0R7 540 aa14.45□□□□□ -0.1
USP28-205ENST00000537706 SPHKAPQ2M3C7 1700 aa14.45□□□□□ -0.1
USP28-205ENST00000537706 MYOM2P54296 1465 aa14.45□□□□□ -0.1
USP28-205ENST00000537706 NPHP3Q7Z494 1330 aa14.44□□□□□ -0.1
USP28-205ENST00000537706 COL22A1Q8NFW1 1626 aaPredicted RBP14.44□□□□□ -0.1
USP28-205ENST00000537706 ORAI2Q96SN7 254 aa14.43□□□□□ -0.1
USP28-205ENST00000537706 CCDC9Q9Y3X0 531 aaKnown RBP14.43□□□□□ -0.1
USP28-205ENST00000537706 LAMC1P11047 1609 aa14.43□□□□□ -0.1
USP28-205ENST00000537706 XRN1Q8IZH2 1706 aaKnown RBP14.43□□□□□ -0.1
USP28-205ENST00000537706 A0A0G2JS52 829 aa14.43□□□□□ -0.1
USP28-205ENST00000537706 MYT1Q01538 1121 aa14.43□□□□□ -0.1
USP28-205ENST00000537706 MYO5BQ9ULV0 1848 aa14.42□□□□□ -0.1
USP28-205ENST00000537706 DAPK1P53355 1430 aa14.41□□□□□ -0.1
USP28-205ENST00000537706 PPP1R1BQ9UD71 204 aaPredicted RBP14.41□□□□□ -0.1
USP28-205ENST00000537706 CHIC2Q9UKJ5 165 aa14.41□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 67.3 ms