RNA–Protein interactions for RNA: ENST00000534143.5

CMTM1-220, Transcript of CKLF like MARVEL transmembrane domain containing 1, humanhuman

TSL 1 (best)

Gene CMTM1, Length 781 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CMTM1-220ENST00000534143 ATP10BO94823 1461 aa9.52□□□□□ -0.89
CMTM1-220ENST00000534143 MMRN1Q13201 1228 aa9.51□□□□□ -0.89
CMTM1-220ENST00000534143 SPNS2Q8IVW8 549 aa9.51□□□□□ -0.89
CMTM1-220ENST00000534143 ANO8Q9HCE9 1232 aaPredicted RBP9.51□□□□□ -0.89
CMTM1-220ENST00000534143 CDK13Q14004 1512 aaKnown RBP9.51□□□□□ -0.89
CMTM1-220ENST00000534143 EVI5O60447 810 aa9.5□□□□□ -0.89
CMTM1-220ENST00000534143 PPARGC1BQ86YN6 1023 aaKnown RBP9.5□□□□□ -0.89
CMTM1-220ENST00000534143 TSHZ2Q9NRE2 1034 aa9.5□□□□□ -0.89
CMTM1-220ENST00000534143 LRRC9Q6ZRR7 1453 aa9.5□□□□□ -0.89
CMTM1-220ENST00000534143 ADCY10Q96PN6 1610 aa9.49□□□□□ -0.89
CMTM1-220ENST00000534143 KDM5BQ9UGL1 1544 aa9.49□□□□□ -0.89
CMTM1-220ENST00000534143 MAGI3Q5TCQ9 1506 aa9.48□□□□□ -0.89
CMTM1-220ENST00000534143 ARID3CA6NKF2 412 aa9.48□□□□□ -0.89
CMTM1-220ENST00000534143 WDR70Q9NW82 654 aa9.48□□□□□ -0.89
CMTM1-220ENST00000534143 PBX2P40425 430 aa9.47□□□□□ -0.89
CMTM1-220ENST00000534143 PLCB2Q00722 1185 aa9.47□□□□□ -0.89
CMTM1-220ENST00000534143 POTEEQ6S8J3 1075 aa9.47□□□□□ -0.89
CMTM1-220ENST00000534143 ZCCHC11Q5TAX3 1644 aaKnown RBP9.46□□□□□ -0.89
CMTM1-220ENST00000534143 PPP4R3BQ5MIZ7 849 aa9.46□□□□□ -0.9
CMTM1-220ENST00000534143 CDK11AQ9UQ88 783 aaPredicted RBP9.46□□□□□ -0.9
CMTM1-220ENST00000534143 EHBP1L1Q8N3D4 1523 aa9.46□□□□□ -0.9
CMTM1-220ENST00000534143 E2F4Q16254 413 aa9.45□□□□□ -0.9
CMTM1-220ENST00000534143 MTUS2Q5JR59 1369 aa9.45□□□□□ -0.9
CMTM1-220ENST00000534143 PLEKHD1A6NEE1 506 aa9.44□□□□□ -0.9
CMTM1-220ENST00000534143 DPYSL4O14531 572 aa9.44□□□□□ -0.9
CMTM1-220ENST00000534143 TROQ12816 1431 aaPredicted RBP9.44□□□□□ -0.9
CMTM1-220ENST00000534143 DIP2BQ9P265 1576 aa9.44□□□□□ -0.9
CMTM1-220ENST00000534143 TSPOAP1O95153 1857 aa9.44□□□□□ -0.9
CMTM1-220ENST00000534143 ARHGAP33O14559 1287 aa9.43□□□□□ -0.9
CMTM1-220ENST00000534143 FOSBP53539 338 aa9.43□□□□□ -0.9
CMTM1-220ENST00000534143 ZNF454Q8N9F8 522 aa9.43□□□□□ -0.9
CMTM1-220ENST00000534143 SUPT6HQ7KZ85 1726 aaKnown RBP9.42□□□□□ -0.9
CMTM1-220ENST00000534143 MAPKBP1O60336 1514 aa9.42□□□□□ -0.9
CMTM1-220ENST00000534143 AXIN2Q9Y2T1 843 aa9.42□□□□□ -0.9
CMTM1-220ENST00000534143 NCOA2Q15596 1464 aa9.41□□□□□ -0.9
CMTM1-220ENST00000534143 LSM11P83369 360 aaKnown RBP eCLIP9.41□□□□□ -0.9
CMTM1-220ENST00000534143 ARIH1Q9Y4X5 557 aaPredicted RBP9.41□□□□□ -0.9
CMTM1-220ENST00000534143 ANKRD13DQ6ZTN6 518 aa9.4□□□□□ -0.9
CMTM1-220ENST00000534143 ABCC10Q5T3U5 1492 aa9.4□□□□□ -0.91
CMTM1-220ENST00000534143 PHLDB1Q86UU1 1377 aa9.39□□□□□ -0.91
CMTM1-220ENST00000534143 KIF14Q15058 1648 aa9.39□□□□□ -0.91
CMTM1-220ENST00000534143 TRIM26Q12899 539 aaPredicted RBP9.39□□□□□ -0.91
CMTM1-220ENST00000534143 ASXL2Q76L83 1435 aa9.39□□□□□ -0.91
CMTM1-220ENST00000534143 BCL2L12Q9HB09 334 aa9.38□□□□□ -0.91
CMTM1-220ENST00000534143 WDR7Q9Y4E6 1490 aa9.38□□□□□ -0.91
CMTM1-220ENST00000534143 PHF14O94880 888 aa9.37□□□□□ -0.91
CMTM1-220ENST00000534143 PTGER2P43116 358 aa9.37□□□□□ -0.91
CMTM1-220ENST00000534143 PSEN2P49810 448 aa9.37□□□□□ -0.91
CMTM1-220ENST00000534143 PDIA6Q15084 440 aa9.37□□□□□ -0.91
CMTM1-220ENST00000534143 ZDHHC16Q969W1 377 aa9.37□□□□□ -0.91
CMTM1-220ENST00000534143 PCDHGA10Q9Y5H3 936 aa9.37□□□□□ -0.91
CMTM1-220ENST00000534143 RRBP1Q9P2E9 1410 aaKnown RBP9.37□□□□□ -0.91
CMTM1-220ENST00000534143 SPDYE16A6NNV3 312 aaPredicted RBP9.36□□□□□ -0.91
CMTM1-220ENST00000534143 FAM69CQ0P6D2 419 aa9.36□□□□□ -0.91
CMTM1-220ENST00000534143 MYOM3Q5VTT5 1437 aa9.36□□□□□ -0.91
CMTM1-220ENST00000534143 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP9.36□□□□□ -0.91
CMTM1-220ENST00000534143 GPATCH8Q9UKJ3 1502 aaKnown RBP9.36□□□□□ -0.91
CMTM1-220ENST00000534143 KDM6BO15054 1643 aa9.35□□□□□ -0.91
CMTM1-220ENST00000534143 CDC42BPAQ5VT25 1732 aa9.35□□□□□ -0.91
CMTM1-220ENST00000534143 DMRTA1Q5VZB9 504 aa9.35□□□□□ -0.91
CMTM1-220ENST00000534143 KCNH8Q96L42 1107 aa9.35□□□□□ -0.91
CMTM1-220ENST00000534143 CCNB3Q8WWL7 1395 aa9.35□□□□□ -0.91
CMTM1-220ENST00000534143 FGD6Q6ZV73 1430 aa9.34□□□□□ -0.91
CMTM1-220ENST00000534143 MIA2Q96PC5 1412 aa9.34□□□□□ -0.91
CMTM1-220ENST00000534143 PTPREP23469 700 aa9.34□□□□□ -0.91
CMTM1-220ENST00000534143 KCNK17Q96T54 332 aa9.34□□□□□ -0.91
CMTM1-220ENST00000534143 ADAM33Q9BZ11 813 aa9.34□□□□□ -0.91
CMTM1-220ENST00000534143 PPRC1Q5VV67 1664 aaKnown RBP9.34□□□□□ -0.91
CMTM1-220ENST00000534143 TTC37Q6PGP7 1564 aa9.33□□□□□ -0.92
CMTM1-220ENST00000534143 ITSN2Q9NZM3 1697 aa9.33□□□□□ -0.92
CMTM1-220ENST00000534143 TK2O00142 265 aa9.33□□□□□ -0.92
CMTM1-220ENST00000534143 TYW1BQ6NUM6 668 aa9.33□□□□□ -0.92
CMTM1-220ENST00000534143 FBXW7Q969H0 707 aa9.33□□□□□ -0.92
CMTM1-220ENST00000534143 ABCA9Q8IUA7 1624 aa9.33□□□□□ -0.92
CMTM1-220ENST00000534143 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP9.33□□□□□ -0.92
CMTM1-220ENST00000534143 CDC42BPBQ9Y5S2 1711 aa9.33□□□□□ -0.92
CMTM1-220ENST00000534143 ADGRD1Q6QNK2 874 aa9.32□□□□□ -0.92
CMTM1-220ENST00000534143 EPAS1Q99814 870 aa9.32□□□□□ -0.92
CMTM1-220ENST00000534143 TCOF1Q13428 1488 aaKnown RBP9.32□□□□□ -0.92
CMTM1-220ENST00000534143 PLCH2O75038 1416 aa9.31□□□□□ -0.92
CMTM1-220ENST00000534143 PREX2Q70Z35 1606 aa9.31□□□□□ -0.92
CMTM1-220ENST00000534143 PTPN23Q9H3S7 1636 aa9.31□□□□□ -0.92
CMTM1-220ENST00000534143 MYO5CQ9NQX4 1742 aa9.31□□□□□ -0.92
CMTM1-220ENST00000534143 HAP1P54257 671 aaPredicted RBP9.31□□□□□ -0.92
CMTM1-220ENST00000534143 DDX12PQ92771 950 aa9.31□□□□□ -0.92
CMTM1-220ENST00000534143 GLI2P10070 1586 aa9.31□□□□□ -0.92
CMTM1-220ENST00000534143 ARHGEF1Q92888 912 aaKnown RBP9.3□□□□□ -0.92
CMTM1-220ENST00000534143 PCGF6Q9BYE7 350 aa9.3□□□□□ -0.92
CMTM1-220ENST00000534143 CFDP1Q9UEE9 299 aaPredicted RBP9.3□□□□□ -0.92
CMTM1-220ENST00000534143 MYT1LQ9UL68 1186 aa9.3□□□□□ -0.92
CMTM1-220ENST00000534143 ARAP3Q8WWN8 1544 aa9.3□□□□□ -0.92
CMTM1-220ENST00000534143 KCNV2Q8TDN2 545 aa9.29□□□□□ -0.92
CMTM1-220ENST00000534143 SLC4A5Q9BY07 1137 aa9.29□□□□□ -0.92
CMTM1-220ENST00000534143 ZNF644Q9H582 1327 aaPredicted RBP9.29□□□□□ -0.92
CMTM1-220ENST00000534143 HRO43593 1189 aa9.28□□□□□ -0.92
CMTM1-220ENST00000534143 FAM50AQ14320 339 aaKnown RBP9.28□□□□□ -0.92
CMTM1-220ENST00000534143 MAP3K4Q9Y6R4 1608 aa9.27□□□□□ -0.92
CMTM1-220ENST00000534143 RNF166Q96A37 237 aaPredicted RBP9.27□□□□□ -0.93
CMTM1-220ENST00000534143 VPS9D1Q9Y2B5 631 aa9.27□□□□□ -0.93
CMTM1-220ENST00000534143 CD109Q6YHK3 1445 aa9.27□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms