RNA–Protein interactions for RNA: ENST00000531118.5

CD44-232, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 877 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-232ENST00000531118 ABCB7O75027 752 aa13.46□□□□□ -0.25
CD44-232ENST00000531118 SHPRHQ149N8 1683 aa13.46□□□□□ -0.26
CD44-232ENST00000531118 UPF1Q92900 1129 aaKnown RBP eCLIP13.45□□□□□ -0.26
CD44-232ENST00000531118 LTKP29376 864 aa13.44□□□□□ -0.26
CD44-232ENST00000531118 TET3O43151 1660 aa13.42□□□□□ -0.26
CD44-232ENST00000531118 EFCAB6Q5THR3 1501 aa13.42□□□□□ -0.26
CD44-232ENST00000531118 TXNDC2Q86VQ3 553 aa13.41□□□□□ -0.26
CD44-232ENST00000531118 AHDC1Q5TGY3 1603 aaPredicted RBP13.41□□□□□ -0.26
CD44-232ENST00000531118 TMEM2Q9UHN6 1383 aa13.41□□□□□ -0.26
CD44-232ENST00000531118 CDK12Q9NYV4 1490 aaPredicted RBP13.41□□□□□ -0.26
CD44-232ENST00000531118 ARHGAP31Q2M1Z3 1444 aa13.4□□□□□ -0.26
CD44-232ENST00000531118 FGD6Q6ZV73 1430 aa13.4□□□□□ -0.26
CD44-232ENST00000531118 ADGRB3O60242 1522 aa13.39□□□□□ -0.27
CD44-232ENST00000531118 MSH6P52701 1360 aa13.39□□□□□ -0.27
CD44-232ENST00000531118 TRIM52Q96A61 297 aa13.38□□□□□ -0.27
CD44-232ENST00000531118 ZBTB12Q9Y330 459 aaPredicted RBP13.38□□□□□ -0.27
CD44-232ENST00000531118 DUOX2Q9NRD8 1548 aa13.38□□□□□ -0.27
CD44-232ENST00000531118 CROCC2H7BZ55 1655 aa13.37□□□□□ -0.27
CD44-232ENST00000531118 CHD2O14647 1828 aaKnown RBP13.37□□□□□ -0.27
CD44-232ENST00000531118 KCNA6P17658 529 aa13.37□□□□□ -0.27
CD44-232ENST00000531118 RSPH4AQ5TD94 716 aa13.37□□□□□ -0.27
CD44-232ENST00000531118 EID1Q9Y6B2 187 aa13.37□□□□□ -0.27
CD44-232ENST00000531118 DIP2AQ14689 1571 aa13.37□□□□□ -0.27
CD44-232ENST00000531118 ZNF772Q68DY9 489 aaPredicted RBP13.36□□□□□ -0.27
CD44-232ENST00000531118 SPATA31A6Q5VVP1 1343 aa13.36□□□□□ -0.27
CD44-232ENST00000531118 RBM33Q96EV2 1170 aaKnown RBP13.35□□□□□ -0.27
CD44-232ENST00000531118 SRCAPQ6ZRS2 3230 aa13.35□□□□□ -0.27
CD44-232ENST00000531118 RGS12O14924 1447 aa13.34□□□□□ -0.27
CD44-232ENST00000531118 MEX3CQ5U5Q3 659 aaKnown RBP13.34□□□□□ -0.27
CD44-232ENST00000531118 PROSER2Q86WR7 435 aaPredicted RBP13.34□□□□□ -0.27
CD44-232ENST00000531118 MYO5BQ9ULV0 1848 aa13.34□□□□□ -0.27
CD44-232ENST00000531118 ERBINQ96RT1 1412 aa13.32□□□□□ -0.28
CD44-232ENST00000531118 TSPY4P0CV99 314 aa13.32□□□□□ -0.28
CD44-232ENST00000531118 TSPY10P0CW01 314 aa13.32□□□□□ -0.28
CD44-232ENST00000531118 SIPA1L2Q9P2F8 1722 aaPredicted RBP13.32□□□□□ -0.28
CD44-232ENST00000531118 LMTK2Q8IWU2 1503 aa13.31□□□□□ -0.28
CD44-232ENST00000531118 SLC26A8Q96RN1 970 aa13.31□□□□□ -0.28
CD44-232ENST00000531118 GCC2Q8IWJ2 1684 aa13.31□□□□□ -0.28
CD44-232ENST00000531118 SLAIN2Q9P270 581 aa13.3□□□□□ -0.28
CD44-232ENST00000531118 NHSL1Q5SYE7 1610 aa13.29□□□□□ -0.28
CD44-232ENST00000531118 RXRBP28702 533 aa13.29□□□□□ -0.28
CD44-232ENST00000531118 STAG3Q9UJ98 1225 aa13.28□□□□□ -0.28
CD44-232ENST00000531118 KIF15Q9NS87 1388 aa13.27□□□□□ -0.29
CD44-232ENST00000531118 ZFYVE9O95405 1425 aa13.26□□□□□ -0.29
CD44-232ENST00000531118 NOS1P29475 1434 aa13.26□□□□□ -0.29
CD44-232ENST00000531118 NCOA3Q9Y6Q9 1424 aa13.26□□□□□ -0.29
CD44-232ENST00000531118 SETBP1Q9Y6X0 1596 aa13.25□□□□□ -0.29
CD44-232ENST00000531118 ASXL1Q8IXJ9 1541 aa13.25□□□□□ -0.29
CD44-232ENST00000531118 PLEKHG1Q9ULL1 1385 aa13.25□□□□□ -0.29
CD44-232ENST00000531118 AFF2P51816 1311 aa13.25□□□□□ -0.29
CD44-232ENST00000531118 MYOM3Q5VTT5 1437 aa13.23□□□□□ -0.29
CD44-232ENST00000531118 IDI1Q13907 227 aa13.22□□□□□ -0.29
CD44-232ENST00000531118 KANK1Q14678 1352 aa13.21□□□□□ -0.29
CD44-232ENST00000531118 TMEM131LA2VDJ0 1609 aa13.21□□□□□ -0.29
CD44-232ENST00000531118 SETD5Q9C0A6 1442 aa13.21□□□□□ -0.3
CD44-232ENST00000531118 NUTM2BA6NNL0 878 aaPredicted RBP13.2□□□□□ -0.3
CD44-232ENST00000531118 NUTM2EB1AL46 878 aaPredicted RBP13.2□□□□□ -0.3
CD44-232ENST00000531118 NUTM2AQ8IVF1 878 aaPredicted RBP13.2□□□□□ -0.3
CD44-232ENST00000531118 DCCP43146 1447 aa13.2□□□□□ -0.3
CD44-232ENST00000531118 RIMS2Q9UQ26 1411 aa13.2□□□□□ -0.3
CD44-232ENST00000531118 ATAD2Q6PL18 1390 aa13.2□□□□□ -0.3
CD44-232ENST00000531118 XRN1Q8IZH2 1706 aaKnown RBP13.19□□□□□ -0.3
CD44-232ENST00000531118 MKRN4PQ13434 485 aaPredicted RBP13.19□□□□□ -0.3
CD44-232ENST00000531118 ADAMTS13Q76LX8 1427 aa13.19□□□□□ -0.3
CD44-232ENST00000531118 TRPM2O94759 1503 aa13.18□□□□□ -0.3
CD44-232ENST00000531118 C14orf37Q86TY3 774 aa13.18□□□□□ -0.3
CD44-232ENST00000531118 CADPS2Q86UW7 1296 aa13.18□□□□□ -0.3
CD44-232ENST00000531118 BCANQ96GW7 911 aa13.18□□□□□ -0.3
CD44-232ENST00000531118 PTPN23Q9H3S7 1636 aa13.17□□□□□ -0.3
CD44-232ENST00000531118 RPRD2Q5VT52 1461 aaKnown RBP13.17□□□□□ -0.3
CD44-232ENST00000531118 ABCC5O15440 1437 aa13.17□□□□□ -0.3
CD44-232ENST00000531118 RBM6P78332 1123 aaKnown RBP13.17□□□□□ -0.3
CD44-232ENST00000531118 BRINP3Q76B58 766 aa13.17□□□□□ -0.3
CD44-232ENST00000531118 LRP5O75197 1615 aa13.17□□□□□ -0.3
CD44-232ENST00000531118 UNC13BO14795 1591 aa13.16□□□□□ -0.3
CD44-232ENST00000531118 NUTM2DQ5VT03 806 aaPredicted RBP13.16□□□□□ -0.3
CD44-232ENST00000531118 PNPLA6Q8IY17 1366 aa13.16□□□□□ -0.3
CD44-232ENST00000531118 DAPK1P53355 1430 aa13.15□□□□□ -0.3
CD44-232ENST00000531118 MST1RQ04912 1400 aa13.15□□□□□ -0.3
CD44-232ENST00000531118 PIK3R4Q99570 1358 aa13.15□□□□□ -0.3
CD44-232ENST00000531118 EP400Q96L91 3159 aa13.15□□□□□ -0.3
CD44-232ENST00000531118 NALCNQ8IZF0 1738 aa13.14□□□□□ -0.31
CD44-232ENST00000531118 PPP1R15AO75807 674 aaPredicted RBP13.14□□□□□ -0.31
CD44-232ENST00000531118 ATF3P18847 181 aa13.14□□□□□ -0.31
CD44-232ENST00000531118 C8orf37Q96NL8 207 aa13.14□□□□□ -0.31
CD44-232ENST00000531118 LAMC1P11047 1609 aa13.13□□□□□ -0.31
CD44-232ENST00000531118 NRXN3Q9Y4C0 1643 aa13.13□□□□□ -0.31
CD44-232ENST00000531118 C19orf44Q9H6X5 657 aa13.13□□□□□ -0.31
CD44-232ENST00000531118 SLC52A1Q9NWF4 448 aa13.13□□□□□ -0.31
CD44-232ENST00000531118 ZRANB1Q9UGI0 708 aa13.13□□□□□ -0.31
CD44-232ENST00000531118 RRP7BPQ9NSQ0 103 aa13.12□□□□□ -0.31
CD44-232ENST00000531118 TBX22Q9Y458 520 aa13.12□□□□□ -0.31
CD44-232ENST00000531118 PTPRUQ92729 1446 aa13.12□□□□□ -0.31
CD44-232ENST00000531118 QTRT2Q9H974 415 aaKnown RBP13.11□□□□□ -0.31
CD44-232ENST00000531118 VPS8Q8N3P4 1428 aa13.11□□□□□ -0.31
CD44-232ENST00000531118 COL22A1Q8NFW1 1626 aaPredicted RBP13.1□□□□□ -0.31
CD44-232ENST00000531118 ATRNO75882 1429 aa13.09□□□□□ -0.31
CD44-232ENST00000531118 MARF1Q9Y4F3 1742 aaKnown RBP13.09□□□□□ -0.31
CD44-232ENST00000531118 E9PCH4 1651 aa13.08□□□□□ -0.31
CD44-232ENST00000531118 NGLY1Q96IV0 654 aa13.08□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms