RNA–Protein interactions for RNA: ENST00000531110.5

CD44-231, Transcript of CD44 molecule (Indian blood group), human

TSL 3

Gene CD44, Length 749 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-231	ENST00000531110	SOWAHB	A6NEL2	793 aa		10.77	□□□□□ -0.69
CD44-231	ENST00000531110	SULF1	Q8IWU6	871 aa		10.77	□□□□□ -0.69
CD44-231	ENST00000531110	SLF2	Q8IX21	1173 aa		10.77	□□□□□ -0.69
CD44-231	ENST00000531110	LRCH3	Q96II8	777 aa		10.77	□□□□□ -0.69
CD44-231	ENST00000531110	SWT1	Q5T5J6	900 aa	Known RBP	10.76	□□□□□ -0.69
CD44-231	ENST00000531110	SAMD7	Q7Z3H4	446 aa		10.76	□□□□□ -0.69
CD44-231	ENST00000531110	PARP9	Q8IXQ6	854 aa		10.76	□□□□□ -0.69
CD44-231	ENST00000531110	WNT2B	Q93097	391 aa		10.76	□□□□□ -0.69
CD44-231	ENST00000531110	CDKN2AIP	Q9NXV6	580 aa	Predicted RBP	10.76	□□□□□ -0.69
CD44-231	ENST00000531110	MDM2	Q00987	491 aa	Predicted RBP	10.75	□□□□□ -0.69
CD44-231	ENST00000531110	TTLL12	Q14166	644 aa	Predicted RBP	10.75	□□□□□ -0.69
CD44-231	ENST00000531110	RSPH4A	Q5TD94	716 aa		10.74	□□□□□ -0.69
CD44-231	ENST00000531110	THSD4	Q6ZMP0	1018 aa		10.73	□□□□□ -0.69
CD44-231	ENST00000531110	FAM217B	Q9NTX9	383 aa	Predicted RBP	10.73	□□□□□ -0.69
CD44-231	ENST00000531110	GIGYF2	Q6Y7W6	1299 aa	Known RBP	10.72	□□□□□ -0.69
CD44-231	ENST00000531110	NYAP1	Q6ZVC0	841 aa		10.71	□□□□□ -0.69
CD44-231	ENST00000531110	BRPF1	P55201	1214 aa	Predicted RBP	10.7	□□□□□ -0.7
CD44-231	ENST00000531110	REPIN1	Q9BWE0	567 aa	Known RBP	10.7	□□□□□ -0.7
CD44-231	ENST00000531110	TSR3	Q9UJK0	312 aa	Known RBP	10.7	□□□□□ -0.7
CD44-231	ENST00000531110	NLRP7	Q8WX94	980 aa		10.69	□□□□□ -0.7
CD44-231	ENST00000531110	RNF166	Q96A37	237 aa	Predicted RBP	10.69	□□□□□ -0.7
CD44-231	ENST00000531110	PRR14	Q9BWN1	585 aa		10.69	□□□□□ -0.7
CD44-231	ENST00000531110	CD46	P15529	392 aa		10.68	□□□□□ -0.7
CD44-231	ENST00000531110	KCTD12	Q96CX2	325 aa	Known RBP	10.68	□□□□□ -0.7
CD44-231	ENST00000531110	KDM4C	Q9H3R0	1056 aa		10.68	□□□□□ -0.7
CD44-231	ENST00000531110	SSTR3	P32745	418 aa	Predicted RBP	10.67	□□□□□ -0.7
CD44-231	ENST00000531110	NEUROD2	Q15784	382 aa		10.67	□□□□□ -0.7
CD44-231	ENST00000531110	DDX11L8	A8MPP1	907 aa		10.66	□□□□□ -0.7
CD44-231	ENST00000531110	BCAM	P50895	628 aa		10.66	□□□□□ -0.7
CD44-231	ENST00000531110	MMRN1	Q13201	1228 aa		10.66	□□□□□ -0.7
CD44-231	ENST00000531110	HPS5	Q9UPZ3	1129 aa		10.66	□□□□□ -0.7
CD44-231	ENST00000531110	SLC10A3	P09131	477 aa		10.65	□□□□□ -0.7
CD44-231	ENST00000531110	PPP4C	P60510	307 aa		10.65	□□□□□ -0.7
CD44-231	ENST00000531110	DDRGK1	Q96HY6	314 aa		10.64	□□□□□ -0.71
CD44-231	ENST00000531110	MS4A1	P11836	297 aa		10.63	□□□□□ -0.71
CD44-231	ENST00000531110	DIXDC1	Q155Q3	683 aa		10.63	□□□□□ -0.71
CD44-231	ENST00000531110	KMT5B	Q4FZB7	885 aa		10.63	□□□□□ -0.71
CD44-231	ENST00000531110	RDH13	Q8NBN7	331 aa		10.63	□□□□□ -0.71
CD44-231	ENST00000531110	GPBP1L1	Q9HC44	474 aa	Predicted RBP	10.63	□□□□□ -0.71
CD44-231	ENST00000531110	HCST	Q9UBK5	93 aa		10.63	□□□□□ -0.71
CD44-231	ENST00000531110	RNF40	O75150	1001 aa		10.62	□□□□□ -0.71
CD44-231	ENST00000531110	GCGR	P47871	477 aa		10.62	□□□□□ -0.71
CD44-231	ENST00000531110	WBP1L	Q9NX94	342 aa		10.61	□□□□□ -0.71
CD44-231	ENST00000531110	CFH	P08603	1231 aa		10.6	□□□□□ -0.71
CD44-231	ENST00000531110	USP46	P62068	366 aa		10.6	□□□□□ -0.71
CD44-231	ENST00000531110	ACTN4	O43707	911 aa	Known RBP	10.59	□□□□□ -0.71
CD44-231	ENST00000531110	BEGAIN	Q9BUH8	593 aa		10.59	□□□□□ -0.71
CD44-231	ENST00000531110	KDM4A	O75164	1064 aa		10.56	□□□□□ -0.72
CD44-231	ENST00000531110	GJA5	P36382	358 aa		10.56	□□□□□ -0.72
CD44-231	ENST00000531110	GRIPAP1	Q4V328	841 aa		10.56	□□□□□ -0.72
CD44-231	ENST00000531110	APLP1	P51693	650 aa		10.55	□□□□□ -0.72
CD44-231	ENST00000531110	PTPN5	P54829	565 aa		10.55	□□□□□ -0.72
CD44-231	ENST00000531110	FAM117A	Q9C073	453 aa		10.55	□□□□□ -0.72
CD44-231	ENST00000531110	RSPH6A	Q9H0K4	717 aa		10.55	□□□□□ -0.72
CD44-231	ENST00000531110	GOPC	Q9HD26	462 aa		10.55	□□□□□ -0.72
CD44-231	ENST00000531110	NUTM1	Q86Y26	1132 aa		10.54	□□□□□ -0.72
CD44-231	ENST00000531110	ATP6V1A	P38606	617 aa		10.53	□□□□□ -0.72
CD44-231	ENST00000531110	SPIRE2	Q8WWL2	714 aa		10.53	□□□□□ -0.72
CD44-231	ENST00000531110	PLEKHG3	A1L390	1219 aa		10.52	□□□□□ -0.73
CD44-231	ENST00000531110	HOXA2	O43364	376 aa		10.51	□□□□□ -0.73
CD44-231	ENST00000531110	FUT2	Q10981	343 aa		10.51	□□□□□ -0.73
CD44-231	ENST00000531110	TUSC1	Q2TAM9	212 aa		10.51	□□□□□ -0.73
CD44-231	ENST00000531110	TBC1D2	Q9BYX2	928 aa		10.51	□□□□□ -0.73
CD44-231	ENST00000531110	SH3D19	Q5HYK7	790 aa		10.5	□□□□□ -0.73
CD44-231	ENST00000531110	PCDHB3	Q9Y5E6	796 aa		10.5	□□□□□ -0.73
CD44-231	ENST00000531110	MORN1	Q5T089	497 aa		10.48	□□□□□ -0.73
CD44-231	ENST00000531110	SALL2	Q9Y467	1007 aa	Predicted RBP	10.48	□□□□□ -0.73
CD44-231	ENST00000531110	SPTLC1	O15269	473 aa		10.47	□□□□□ -0.73
CD44-231	ENST00000531110	NR1I2	O75469	434 aa		10.47	□□□□□ -0.73
CD44-231	ENST00000531110	ITGBL1	O95965	494 aa	Predicted RBP	10.47	□□□□□ -0.73
CD44-231	ENST00000531110	MYSM1	Q5VVJ2	828 aa		10.47	□□□□□ -0.73
CD44-231	ENST00000531110	SKIV2L	Q15477	1246 aa	Known RBP	10.46	□□□□□ -0.73
CD44-231	ENST00000531110	TMEM132A	Q24JP5	1023 aa		10.46	□□□□□ -0.73
CD44-231	ENST00000531110	TJAP1	Q5JTD0	557 aa		10.45	□□□□□ -0.74
CD44-231	ENST00000531110	RSBN1L	Q6PCB5	846 aa	Predicted RBP	10.45	□□□□□ -0.74
CD44-231	ENST00000531110	IL27	Q8NEV9	243 aa		10.45	□□□□□ -0.74
CD44-231	ENST00000531110	IL21	Q9HBE4	155 aa		10.45	□□□□□ -0.74
CD44-231	ENST00000531110		Q3C1V9	767 aa		10.44	□□□□□ -0.74
CD44-231	ENST00000531110	IFFO2	Q5TF58	517 aa		10.44	□□□□□ -0.74
CD44-231	ENST00000531110	MTR	Q99707	1265 aa		10.44	□□□□□ -0.74
CD44-231	ENST00000531110	MOXD2P	A6NHM9	499 aa		10.43	□□□□□ -0.74
CD44-231	ENST00000531110	BLOC1S3	Q6QNY0	202 aa		10.43	□□□□□ -0.74
CD44-231	ENST00000531110	FDX1	P10109	184 aa		10.42	□□□□□ -0.74
CD44-231	ENST00000531110	CLK2	P49760	499 aa	Known RBP	10.42	□□□□□ -0.74
CD44-231	ENST00000531110	PRPF38B	Q5VTL8	546 aa	Known RBP	10.42	□□□□□ -0.74
CD44-231	ENST00000531110	RIC3	Q7Z5B4	369 aa		10.42	□□□□□ -0.74
CD44-231	ENST00000531110	ZPR1	O75312	459 aa		10.41	□□□□□ -0.74
CD44-231	ENST00000531110	SCUBE3	Q8IX30	993 aa		10.41	□□□□□ -0.74
CD44-231	ENST00000531110	SLC27A5	Q9Y2P5	690 aa		10.41	□□□□□ -0.74
CD44-231	ENST00000531110	SPDYE5	A6NIY4	337 aa		10.4	□□□□□ -0.74
CD44-231	ENST00000531110	PUS10	Q3MIT2	529 aa	Known RBP	10.4	□□□□□ -0.74
CD44-231	ENST00000531110	KCNC4	Q03721	635 aa		10.39	□□□□□ -0.75
CD44-231	ENST00000531110	THAP11	Q96EK4	314 aa		10.39	□□□□□ -0.75
CD44-231	ENST00000531110	GNL3	Q9BVP2	549 aa	Known RBP eCLIP	10.39	□□□□□ -0.75
CD44-231	ENST00000531110	FMNL1	O95466	1100 aa	Predicted RBP	10.38	□□□□□ -0.75
CD44-231	ENST00000531110	NDUFV2	P19404	249 aa		10.38	□□□□□ -0.75
CD44-231	ENST00000531110	COPS2	P61201	443 aa		10.38	□□□□□ -0.75
CD44-231	ENST00000531110	PCMTD1	Q96MG8	357 aa	Predicted RBP	10.38	□□□□□ -0.75
CD44-231	ENST00000531110	PCDHGC3	Q9UN70	934 aa		10.38	□□□□□ -0.75
CD44-231	ENST00000531110	BRICD5	Q6PL45	260 aa		10.37	□□□□□ -0.75

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