RNA–Protein interactions for RNA: ENST00000529553.1

AMBRA1-207, Transcript of autophagy and beclin 1 regulator 1, humanhuman

TSL 3

Gene AMBRA1, Length 586 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
AMBRA1-207ENST00000529553 CDK12Q9NYV4 1490 aaPredicted RBP18.48■□□□□ 0.55
AMBRA1-207ENST00000529553 RRP7BPQ9NSQ0 103 aa18.48■□□□□ 0.55
AMBRA1-207ENST00000529553 CADPS2Q86UW7 1296 aa18.47■□□□□ 0.55
AMBRA1-207ENST00000529553 TBX22Q9Y458 520 aa18.47■□□□□ 0.55
AMBRA1-207ENST00000529553 LRP6O75581 1613 aa18.47■□□□□ 0.55
AMBRA1-207ENST00000529553 C19orf44Q9H6X5 657 aa18.46■□□□□ 0.55
AMBRA1-207ENST00000529553 COL16A1Q07092 1604 aaPredicted RBP18.45■□□□□ 0.54
AMBRA1-207ENST00000529553 LMTK2Q8IWU2 1503 aa18.45■□□□□ 0.54
AMBRA1-207ENST00000529553 PLEKHG1Q9ULL1 1385 aa18.44■□□□□ 0.54
AMBRA1-207ENST00000529553 NOS1P29475 1434 aa18.44■□□□□ 0.54
AMBRA1-207ENST00000529553 ATF3P18847 181 aa18.43■□□□□ 0.54
AMBRA1-207ENST00000529553 C14orf37Q86TY3 774 aa18.41■□□□□ 0.54
AMBRA1-207ENST00000529553 ABCC5O15440 1437 aa18.4■□□□□ 0.54
AMBRA1-207ENST00000529553 ADGRB3O60242 1522 aa18.39■□□□□ 0.54
AMBRA1-207ENST00000529553 AHDC1Q5TGY3 1603 aaPredicted RBP18.39■□□□□ 0.53
AMBRA1-207ENST00000529553 PPP1R15AO75807 674 aaPredicted RBP18.39■□□□□ 0.53
AMBRA1-207ENST00000529553 ABCF1Q8NE71 845 aaKnown RBP eCLIP18.39■□□□□ 0.53
AMBRA1-207ENST00000529553 KANK4Q5T7N3 995 aaPredicted RBP18.38■□□□□ 0.53
AMBRA1-207ENST00000529553 AFF2P51816 1311 aa18.38■□□□□ 0.53
AMBRA1-207ENST00000529553 ZFYVE9O95405 1425 aa18.38■□□□□ 0.53
AMBRA1-207ENST00000529553 NUTM2BA6NNL0 878 aaPredicted RBP18.37■□□□□ 0.53
AMBRA1-207ENST00000529553 NUTM2EB1AL46 878 aaPredicted RBP18.37■□□□□ 0.53
AMBRA1-207ENST00000529553 RBM6P78332 1123 aaKnown RBP18.37■□□□□ 0.53
AMBRA1-207ENST00000529553 FOXD1Q16676 465 aa18.37■□□□□ 0.53
AMBRA1-207ENST00000529553 NUTM2AQ8IVF1 878 aaPredicted RBP18.37■□□□□ 0.53
AMBRA1-207ENST00000529553 PIK3R4Q99570 1358 aa18.37■□□□□ 0.53
AMBRA1-207ENST00000529553 SRCAPQ6ZRS2 3230 aa18.36■□□□□ 0.53
AMBRA1-207ENST00000529553 SHPRHQ149N8 1683 aa18.36■□□□□ 0.53
AMBRA1-207ENST00000529553 BRINP3Q76B58 766 aa18.36■□□□□ 0.53
AMBRA1-207ENST00000529553 QTRT2Q9H974 415 aaKnown RBP18.36■□□□□ 0.53
AMBRA1-207ENST00000529553 CHD2O14647 1828 aaKnown RBP18.35■□□□□ 0.53
AMBRA1-207ENST00000529553 RIMS2Q9UQ26 1411 aa18.35■□□□□ 0.53
AMBRA1-207ENST00000529553 ANKRD30AQ9BXX3 1397 aa18.34■□□□□ 0.53
AMBRA1-207ENST00000529553 LRRC59Q96AG4 307 aaKnown RBP18.34■□□□□ 0.53
AMBRA1-207ENST00000529553 RPRD2Q5VT52 1461 aaKnown RBP18.33■□□□□ 0.52
AMBRA1-207ENST00000529553 SETD5Q9C0A6 1442 aa18.32■□□□□ 0.52
AMBRA1-207ENST00000529553 VPS8Q8N3P4 1428 aa18.32■□□□□ 0.52
AMBRA1-207ENST00000529553 NGLY1Q96IV0 654 aa18.31■□□□□ 0.52
AMBRA1-207ENST00000529553 DAPK1P53355 1430 aa18.31■□□□□ 0.52
AMBRA1-207ENST00000529553 DIP2AQ14689 1571 aa18.3■□□□□ 0.52
AMBRA1-207ENST00000529553 NUTM2DQ5VT03 806 aaPredicted RBP18.29■□□□□ 0.52
AMBRA1-207ENST00000529553 ZRANB1Q9UGI0 708 aa18.29■□□□□ 0.52
AMBRA1-207ENST00000529553 AMOTL2Q9Y2J4 779 aa18.29■□□□□ 0.52
AMBRA1-207ENST00000529553 ADAMTS13Q76LX8 1427 aa18.29■□□□□ 0.52
AMBRA1-207ENST00000529553 CHIC2Q9UKJ5 165 aa18.28■□□□□ 0.52
AMBRA1-207ENST00000529553 RGS12O14924 1447 aa18.28■□□□□ 0.52
AMBRA1-207ENST00000529553 DCCP43146 1447 aa18.28■□□□□ 0.52
AMBRA1-207ENST00000529553 SIPA1L2Q9P2F8 1722 aaPredicted RBP18.28■□□□□ 0.52
AMBRA1-207ENST00000529553 C8orf37Q96NL8 207 aa18.27■□□□□ 0.52
AMBRA1-207ENST00000529553 ATAD2Q6PL18 1390 aa18.26■□□□□ 0.51
AMBRA1-207ENST00000529553 CROCC2H7BZ55 1655 aa18.24■□□□□ 0.51
AMBRA1-207ENST00000529553 CHGAP10645 457 aaKnown RBP18.23■□□□□ 0.51
AMBRA1-207ENST00000529553 CCDC125Q86Z20 511 aa18.23■□□□□ 0.51
AMBRA1-207ENST00000529553 TMEM131LA2VDJ0 1609 aa18.23■□□□□ 0.51
AMBRA1-207ENST00000529553 PTPN23Q9H3S7 1636 aa18.22■□□□□ 0.51
AMBRA1-207ENST00000529553 ASXL1Q8IXJ9 1541 aa18.22■□□□□ 0.51
AMBRA1-207ENST00000529553 PNPLA6Q8IY17 1366 aa18.2■□□□□ 0.5
AMBRA1-207ENST00000529553 MST1RQ04912 1400 aa18.2■□□□□ 0.5
AMBRA1-207ENST00000529553 PTPRUQ92729 1446 aa18.19■□□□□ 0.5
AMBRA1-207ENST00000529553 TRPC5Q9UL62 973 aaPredicted RBP18.19■□□□□ 0.5
AMBRA1-207ENST00000529553 TRPM2O94759 1503 aa18.18■□□□□ 0.5
AMBRA1-207ENST00000529553 ADGRL2O95490 1459 aa18.18■□□□□ 0.5
AMBRA1-207ENST00000529553 ANKRD50Q9ULJ7 1429 aa18.17■□□□□ 0.5
AMBRA1-207ENST00000529553 FNBP4Q8N3X1 1017 aaPredicted RBP18.17■□□□□ 0.5
AMBRA1-207ENST00000529553 USP21Q9UK80 565 aa18.16■□□□□ 0.5
AMBRA1-207ENST00000529553 ADAMTS2O95450 1211 aa18.15■□□□□ 0.5
AMBRA1-207ENST00000529553 APLP2Q06481 763 aa18.15■□□□□ 0.5
AMBRA1-207ENST00000529553 GCC2Q8IWJ2 1684 aa18.15■□□□□ 0.5
AMBRA1-207ENST00000529553 NHSL1Q5SYE7 1610 aa18.13■□□□□ 0.49
AMBRA1-207ENST00000529553 DDX17Q92841 729 aaKnown RBP18.13■□□□□ 0.49
AMBRA1-207ENST00000529553 MYO5BQ9ULV0 1848 aa18.12■□□□□ 0.49
AMBRA1-207ENST00000529553 PTCH1Q13635 1447 aa18.11■□□□□ 0.49
AMBRA1-207ENST00000529553 SOS2Q07890 1332 aaPredicted RBP18.1■□□□□ 0.49
AMBRA1-207ENST00000529553 ADGRL3Q9HAR2 1447 aa18.09■□□□□ 0.49
AMBRA1-207ENST00000529553 ATRNO75882 1429 aa18.08■□□□□ 0.49
AMBRA1-207ENST00000529553 SETBP1Q9Y6X0 1596 aa18.08■□□□□ 0.48
AMBRA1-207ENST00000529553 UNC13BO14795 1591 aa18.07■□□□□ 0.48
AMBRA1-207ENST00000529553 C1orf167Q5SNV9 1468 aa18.07■□□□□ 0.48
AMBRA1-207ENST00000529553 METP08581 1390 aa18.06■□□□□ 0.48
AMBRA1-207ENST00000529553 XRN1Q8IZH2 1706 aaKnown RBP18.05■□□□□ 0.48
AMBRA1-207ENST00000529553 LOC105371045A0A1W2PR82 267 aa18.03■□□□□ 0.48
AMBRA1-207ENST00000529553 FAM50AQ14320 339 aaKnown RBP18.03■□□□□ 0.48
AMBRA1-207ENST00000529553 GJD4Q96KN9 370 aaPredicted RBP18.03■□□□□ 0.48
AMBRA1-207ENST00000529553 ORAI2Q96SN7 254 aa18.02■□□□□ 0.48
AMBRA1-207ENST00000529553 LAMC1P11047 1609 aa18.01■□□□□ 0.47
AMBRA1-207ENST00000529553 ZNF326Q5BKZ1 582 aaKnown RBP18.01■□□□□ 0.47
AMBRA1-207ENST00000529553 BCL9LQ86UU0 1499 aa18.01■□□□□ 0.47
AMBRA1-207ENST00000529553 EP400Q96L91 3159 aa18■□□□□ 0.47
AMBRA1-207ENST00000529553 E9PCH4 1651 aa17.99■□□□□ 0.47
AMBRA1-207ENST00000529553 BLMP54132 1417 aaPredicted RBP17.99■□□□□ 0.47
AMBRA1-207ENST00000529553 NRXN3Q9Y4C0 1643 aa17.99■□□□□ 0.47
AMBRA1-207ENST00000529553 NUP155O75694 1391 aa17.98■□□□□ 0.47
AMBRA1-207ENST00000529553 ROCK1Q13464 1354 aa17.96■□□□□ 0.47
AMBRA1-207ENST00000529553 NPHP3Q7Z494 1330 aa17.96■□□□□ 0.46
AMBRA1-207ENST00000529553 MYOM2P54296 1465 aa17.95■□□□□ 0.46
AMBRA1-207ENST00000529553 SF3B2Q13435 895 aaKnown RBP17.95■□□□□ 0.46
AMBRA1-207ENST00000529553 UNC5CLQ8IV45 518 aa17.94■□□□□ 0.46
AMBRA1-207ENST00000529553 IQGAP3Q86VI3 1631 aa17.94■□□□□ 0.46
AMBRA1-207ENST00000529553 COL22A1Q8NFW1 1626 aaPredicted RBP17.94■□□□□ 0.46
AMBRA1-207ENST00000529553 DEFB132Q7Z7B7 95 aa17.92■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 7.1 ms