RNA–Protein interactions for RNA: ENST00000526869.1

SMCO4-203, Transcript of single-pass membrane protein with coiled-coil domains 4, humanhuman

TSL 1 (best)

Gene SMCO4, Length 374 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCO4-203ENST00000526869 CHGAP10645 457 aaKnown RBP28.81■■■□□ 2.2
SMCO4-203ENST00000526869 FER1L4A9Z1Z3 1794 aa28.8■■■□□ 2.2
SMCO4-203ENST00000526869 ZFYVE9O95405 1425 aa28.8■■■□□ 2.2
SMCO4-203ENST00000526869 NBPF1Q3BBV0 1214 aa28.76■■■□□ 2.19
SMCO4-203ENST00000526869 KDM5AP29375 1690 aaKnown RBP28.76■■■□□ 2.19
SMCO4-203ENST00000526869 IQGAP1P46940 1657 aa28.76■■■□□ 2.19
SMCO4-203ENST00000526869 PIK3C2GO75747 1445 aa28.76■■■□□ 2.19
SMCO4-203ENST00000526869 MYO5BQ9ULV0 1848 aa28.75■■■□□ 2.19
SMCO4-203ENST00000526869 ADGRF5Q8IZF2 1346 aa28.74■■■□□ 2.19
SMCO4-203ENST00000526869 SETBP1Q9Y6X0 1596 aa28.74■■■□□ 2.19
SMCO4-203ENST00000526869 TNRQ92752 1358 aa28.74■■■□□ 2.19
SMCO4-203ENST00000526869 CCDC7Q96M83 1385 aa28.73■■■□□ 2.19
SMCO4-203ENST00000526869 C3P01024 1663 aa28.72■■■□□ 2.19
SMCO4-203ENST00000526869 WASHC2AQ641Q2 1341 aa28.71■■■□□ 2.19
SMCO4-203ENST00000526869 VGFO15240 615 aaPredicted RBP28.71■■■□□ 2.19
SMCO4-203ENST00000526869 A2ML1A8K2U0 1454 aa28.71■■■□□ 2.19
SMCO4-203ENST00000526869 SCAF11Q99590 1463 aaKnown RBP28.7■■■□□ 2.18
SMCO4-203ENST00000526869 NLRP1Q9C000 1473 aa28.67■■■□□ 2.18
SMCO4-203ENST00000526869 DDX10Q13206 875 aaKnown RBP28.66■■■□□ 2.18
SMCO4-203ENST00000526869 ST20-MTHFSA0A0A6YYL1 179 aa28.64■■■□□ 2.18
SMCO4-203ENST00000526869 C14orf93Q9H972 538 aaKnown RBP28.64■■■□□ 2.18
SMCO4-203ENST00000526869 ADAMTSL3P82987 1691 aa28.64■■■□□ 2.17
SMCO4-203ENST00000526869 STAG3Q9UJ98 1225 aa28.63■■■□□ 2.17
SMCO4-203ENST00000526869 KIF7Q2M1P5 1343 aa28.63■■■□□ 2.17
SMCO4-203ENST00000526869 C11orf95C9JLR9 678 aaPredicted RBP28.62■■■□□ 2.17
SMCO4-203ENST00000526869 CFAP70Q5T0N1 1121 aa28.62■■■□□ 2.17
SMCO4-203ENST00000526869 EIF3AQ14152 1382 aaKnown RBP28.62■■■□□ 2.17
SMCO4-203ENST00000526869 ADGRB1O14514 1584 aa28.61■■■□□ 2.17
SMCO4-203ENST00000526869 UBR1Q8IWV7 1749 aa28.6■■■□□ 2.17
SMCO4-203ENST00000526869 RIMS2Q9UQ26 1411 aa28.58■■■□□ 2.17
SMCO4-203ENST00000526869 MIER1Q8N108 512 aa28.57■■■□□ 2.16
SMCO4-203ENST00000526869 MYO3AQ8NEV4 1616 aa28.57■■■□□ 2.16
SMCO4-203ENST00000526869 RIMS1Q86UR5 1692 aaKnown RBP28.57■■■□□ 2.16
SMCO4-203ENST00000526869 ABCF1Q8NE71 845 aaKnown RBP eCLIP28.54■■■□□ 2.16
SMCO4-203ENST00000526869 TESK2Q96S53 571 aa28.54■■■□□ 2.16
SMCO4-203ENST00000526869 SLC24A1O60721 1099 aa28.5■■■□□ 2.15
SMCO4-203ENST00000526869 CEBPAP49715 358 aaPredicted RBP28.5■■■□□ 2.15
SMCO4-203ENST00000526869 AEBP2Q6ZN18 517 aaPredicted RBP28.5■■■□□ 2.15
SMCO4-203ENST00000526869 HDGFP51858 240 aaKnown RBP28.49■■■□□ 2.15
SMCO4-203ENST00000526869 SBNO2Q9Y2G9 1366 aa28.49■■■□□ 2.15
SMCO4-203ENST00000526869 TMEM2Q9UHN6 1383 aa28.48■■■□□ 2.15
SMCO4-203ENST00000526869 ALKQ9UM73 1620 aa28.47■■■□□ 2.15
SMCO4-203ENST00000526869 NUTM2DQ5VT03 806 aaPredicted RBP28.47■■■□□ 2.15
SMCO4-203ENST00000526869 ASXL1Q8IXJ9 1541 aa28.47■■■□□ 2.15
SMCO4-203ENST00000526869 TMF1P82094 1093 aa28.46■■■□□ 2.15
SMCO4-203ENST00000526869 SLIT1O75093 1534 aa28.44■■■□□ 2.14
SMCO4-203ENST00000526869 ARHGAP23Q9P227 1491 aa28.43■■■□□ 2.14
SMCO4-203ENST00000526869 DISP3Q9P2K9 1392 aa28.43■■■□□ 2.14
SMCO4-203ENST00000526869 SETD1AO15047 1707 aaKnown RBP28.43■■■□□ 2.14
SMCO4-203ENST00000526869 ARHGEF28Q8N1W1 1705 aaKnown RBP28.41■■■□□ 2.14
SMCO4-203ENST00000526869 NRXN3Q9Y4C0 1643 aa28.41■■■□□ 2.14
SMCO4-203ENST00000526869 CDCA8Q53HL2 280 aa28.4■■■□□ 2.14
SMCO4-203ENST00000526869 ZNF142P52746 1687 aaPredicted RBP28.39■■■□□ 2.14
SMCO4-203ENST00000526869 ANP32CO43423 234 aa28.39■■■□□ 2.14
SMCO4-203ENST00000526869 CEP170BQ9Y4F5 1589 aaPredicted RBP28.39■■■□□ 2.14
SMCO4-203ENST00000526869 CENPJQ9HC77 1338 aaPredicted RBP28.38■■■□□ 2.13
SMCO4-203ENST00000526869 TMEM132EQ6IEE7 984 aa28.37■■■□□ 2.13
SMCO4-203ENST00000526869 PTPRMP28827 1452 aa28.37■■■□□ 2.13
SMCO4-203ENST00000526869 QRICH2Q9H0J4 1663 aa28.37■■■□□ 2.13
SMCO4-203ENST00000526869 YTHDC2Q9H6S0 1430 aaKnown RBP28.35■■■□□ 2.13
SMCO4-203ENST00000526869 PLEKHG1Q9ULL1 1385 aa28.35■■■□□ 2.13
SMCO4-203ENST00000526869 THEMISQ8N1K5 641 aaPredicted RBP28.34■■■□□ 2.13
SMCO4-203ENST00000526869 DLC1Q96QB1 1528 aa28.33■■■□□ 2.13
SMCO4-203ENST00000526869 TRAK1Q9UPV9 953 aa28.33■■■□□ 2.13
SMCO4-203ENST00000526869 POLR3GLQ9BT43 218 aa28.32■■■□□ 2.12
SMCO4-203ENST00000526869 SETD1BQ9UPS6 1966 aaKnown RBP28.31■■■□□ 2.12
SMCO4-203ENST00000526869 LRPPRCP42704 1394 aaKnown RBP28.3■■■□□ 2.12
SMCO4-203ENST00000526869 CCER2I3L3R5 266 aa28.29■■■□□ 2.12
SMCO4-203ENST00000526869 EID1Q9Y6B2 187 aa28.29■■■□□ 2.12
SMCO4-203ENST00000526869 KNDC1Q76NI1 1749 aa28.27■■■□□ 2.12
SMCO4-203ENST00000526869 PLPPR3Q6T4P5 718 aa28.27■■■□□ 2.12
SMCO4-203ENST00000526869 ADAMTS13Q76LX8 1427 aa28.26■■■□□ 2.11
SMCO4-203ENST00000526869 ABCC11Q96J66 1382 aa28.25■■■□□ 2.11
SMCO4-203ENST00000526869 DIP2AQ14689 1571 aa28.25■■■□□ 2.11
SMCO4-203ENST00000526869 MED14O60244 1454 aa28.25■■■□□ 2.11
SMCO4-203ENST00000526869 LTKP29376 864 aa28.24■■■□□ 2.11
SMCO4-203ENST00000526869 TXNDC2Q86VQ3 553 aa28.24■■■□□ 2.11
SMCO4-203ENST00000526869 PUS7Q96PZ0 661 aaKnown RBP28.24■■■□□ 2.11
SMCO4-203ENST00000526869 MYOM1P52179 1685 aa28.23■■■□□ 2.11
SMCO4-203ENST00000526869 TECPR2O15040 1411 aa28.23■■■□□ 2.11
SMCO4-203ENST00000526869 CPS1P31327 1500 aa28.19■■■□□ 2.1
SMCO4-203ENST00000526869 SIRT1Q96EB6 747 aa28.19■■■□□ 2.1
SMCO4-203ENST00000526869 STK26Q9P289 416 aa28.19■■■□□ 2.1
SMCO4-203ENST00000526869 METP08581 1390 aa28.19■■■□□ 2.1
SMCO4-203ENST00000526869 TULP4Q9NRJ4 1543 aa28.18■■■□□ 2.1
SMCO4-203ENST00000526869 PRKRIP1Q9H875 184 aaPredicted RBP28.18■■■□□ 2.1
SMCO4-203ENST00000526869 KTN1Q86UP2 1357 aaKnown RBP28.18■■■□□ 2.1
SMCO4-203ENST00000526869 FAM135BQ49AJ0 1406 aa28.17■■■□□ 2.1
SMCO4-203ENST00000526869 EVC2Q86UK5 1308 aa28.16■■■□□ 2.1
SMCO4-203ENST00000526869 PRAM1Q96QH2 718 aa28.14■■■□□ 2.1
SMCO4-203ENST00000526869 SENP3Q9H4L4 574 aaPredicted RBP28.14■■■□□ 2.1
SMCO4-203ENST00000526869 BCANQ96GW7 911 aa28.13■■■□□ 2.09
SMCO4-203ENST00000526869 POGKQ9P215 609 aa28.13■■■□□ 2.09
SMCO4-203ENST00000526869 TBX22Q9Y458 520 aa28.13■■■□□ 2.09
SMCO4-203ENST00000526869 PER1O15534 1290 aaPredicted RBP28.11■■■□□ 2.09
SMCO4-203ENST00000526869 PANK3Q9H999 370 aa28.11■■■□□ 2.09
SMCO4-203ENST00000526869 ANKLE2Q86XL3 938 aa28.08■■■□□ 2.09
SMCO4-203ENST00000526869 PIK3R4Q99570 1358 aa28.08■■■□□ 2.09
SMCO4-203ENST00000526869 NINLQ9Y2I6 1382 aa28.07■■■□□ 2.08
SMCO4-203ENST00000526869 RALBP1Q15311 655 aa28.04■■■□□ 2.08
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms