RNA–Protein interactions for RNA: ENST00000525688.5

CD44-220, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 560 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-220ENST00000525688 SPTLC1O15269 473 aa8.89□□□□□ -0.99
CD44-220ENST00000525688 RIC3Q7Z5B4 369 aa8.89□□□□□ -0.99
CD44-220ENST00000525688 KIAA1468Q9P260 1216 aa8.89□□□□□ -0.99
CD44-220ENST00000525688 LIMD1Q9UGP4 676 aa8.89□□□□□ -0.99
CD44-220ENST00000525688 RABGEF1Q9UJ41 708 aa8.89□□□□□ -0.99
CD44-220ENST00000525688 SMAPO00193 183 aa8.88□□□□□ -0.99
CD44-220ENST00000525688 NUTM1Q86Y26 1132 aa8.88□□□□□ -0.99
CD44-220ENST00000525688 HOMEZQ8IX15 550 aa8.88□□□□□ -0.99
CD44-220ENST00000525688 BANK1Q8NDB2 785 aa8.88□□□□□ -0.99
CD44-220ENST00000525688 PSEN2P49810 448 aa8.87□□□□□ -0.99
CD44-220ENST00000525688 RSBN1LQ6PCB5 846 aaPredicted RBP8.87□□□□□ -0.99
CD44-220ENST00000525688 POTEEQ6S8J3 1075 aa8.87□□□□□ -0.99
CD44-220ENST00000525688 ERBB3P21860 1342 aa8.86□□□□□ -0.99
CD44-220ENST00000525688 SPDYE5A6NIY4 337 aa8.86□□□□□ -0.99
CD44-220ENST00000525688 UBTFP17480 764 aaKnown RBP8.86□□□□□ -0.99
CD44-220ENST00000525688 RFC5P40937 340 aa8.86□□□□□ -0.99
CD44-220ENST00000525688 TMEM259Q4ZIN3 620 aa8.86□□□□□ -0.99
CD44-220ENST00000525688 ATP1B4Q9UN42 357 aaPredicted RBP8.86□□□□□ -0.99
CD44-220ENST00000525688 PBX2P40425 430 aa8.85□□□□□ -0.99
CD44-220ENST00000525688 VARS2Q5ST30 1063 aaKnown RBP8.85□□□□□ -0.99
CD44-220ENST00000525688 RSPH4AQ5TD94 716 aa8.85□□□□□ -0.99
CD44-220ENST00000525688 FBXO31Q5XUX0 539 aaPredicted RBP8.85□□□□□ -0.99
CD44-220ENST00000525688 LHX8Q68G74 356 aa8.85□□□□□ -0.99
CD44-220ENST00000525688 MOXD2PA6NHM9 499 aa8.84□□□□□ -0.99
CD44-220ENST00000525688 GCGRP47871 477 aa8.84□□□□□ -0.99
CD44-220ENST00000525688 USP46P62068 366 aa8.84□□□□□ -0.99
CD44-220ENST00000525688 TRAK2O60296 914 aa8.83□□□□□ -1
CD44-220ENST00000525688 LILRB3O75022 631 aa8.83□□□□□ -1
CD44-220ENST00000525688 KDM4AO75164 1064 aa8.83□□□□□ -1
CD44-220ENST00000525688 RDH13Q8NBN7 331 aa8.83□□□□□ -1
CD44-220ENST00000525688 CLUAP1Q96AJ1 413 aa8.83□□□□□ -1
CD44-220ENST00000525688 ST18O60284 1047 aa8.82□□□□□ -1
CD44-220ENST00000525688 DMRTA1Q5VZB9 504 aa8.82□□□□□ -1
CD44-220ENST00000525688 ZNF687Q8N1G0 1237 aa8.82□□□□□ -1
CD44-220ENST00000525688 C1orf115Q9H7X2 142 aa8.82□□□□□ -1
CD44-220ENST00000525688 SOCS7O14512 581 aa8.81□□□□□ -1
CD44-220ENST00000525688 SLC10A3P09131 477 aa8.81□□□□□ -1
CD44-220ENST00000525688 NDUFV2P19404 249 aa8.81□□□□□ -1
CD44-220ENST00000525688 FAM98CQ17RN3 349 aaKnown RBP8.81□□□□□ -1
CD44-220ENST00000525688 SWT1Q5T5J6 900 aaKnown RBP8.81□□□□□ -1
CD44-220ENST00000525688 PRPF38BQ5VTL8 546 aaKnown RBP8.81□□□□□ -1
CD44-220ENST00000525688 VPS9D1Q9Y2B5 631 aa8.81□□□□□ -1
CD44-220ENST00000525688 HDGFP51858 240 aaKnown RBP8.8□□□□□ -1
CD44-220ENST00000525688 LAPTM4BQ86VI4 370 aa8.8□□□□□ -1
CD44-220ENST00000525688 PCDHB15Q9Y5E8 787 aa8.8□□□□□ -1
CD44-220ENST00000525688 HOXA2O43364 376 aa8.79□□□□□ -1
CD44-220ENST00000525688 QPCTQ16769 361 aa8.79□□□□□ -1
CD44-220ENST00000525688 FNBP4Q8N3X1 1017 aaPredicted RBP8.79□□□□□ -1
CD44-220ENST00000525688 SNRKQ9NRH2 765 aa8.79□□□□□ -1
CD44-220ENST00000525688 SEPT9Q9UHD8 586 aaPredicted RBP8.79□□□□□ -1
CD44-220ENST00000525688 AXIN2Q9Y2T1 843 aa8.79□□□□□ -1
CD44-220ENST00000525688 APBB1O00213 710 aa8.78□□□□□ -1
CD44-220ENST00000525688 EMP3P54852 163 aa8.78□□□□□ -1
CD44-220ENST00000525688 PROSER2Q86WR7 435 aaPredicted RBP8.78□□□□□ -1
CD44-220ENST00000525688 BHMG1C9JSJ3 638 aaPredicted RBP8.77□□□□□ -1.01
CD44-220ENST00000525688 RAD21O60216 631 aa8.77□□□□□ -1.01
CD44-220ENST00000525688 SLC4A3P48751 1232 aa8.77□□□□□ -1.01
CD44-220ENST00000525688 SLF2Q8IX21 1173 aa8.77□□□□□ -1.01
CD44-220ENST00000525688 POM121Q96HA1 1249 aa8.77□□□□□ -1.01
CD44-220ENST00000525688 COG6Q9Y2V7 657 aa8.77□□□□□ -1.01
CD44-220ENST00000525688 TK2O00142 265 aa8.76□□□□□ -1.01
CD44-220ENST00000525688 CSPP1Q1MSJ5 1256 aa8.76□□□□□ -1.01
CD44-220ENST00000525688 NBPF3Q9H094 633 aa8.76□□□□□ -1.01
CD44-220ENST00000525688 FAM205CA6NFA0 338 aa8.75□□□□□ -1.01
CD44-220ENST00000525688 ARID3CA6NKF2 412 aa8.75□□□□□ -1.01
CD44-220ENST00000525688 FDX1P10109 184 aa8.75□□□□□ -1.01
CD44-220ENST00000525688 RTL5Q5HYW3 569 aaPredicted RBP8.75□□□□□ -1.01
CD44-220ENST00000525688 MTMR14Q8NCE2 650 aa8.75□□□□□ -1.01
CD44-220ENST00000525688 MARVELD3Q96A59 401 aa8.75□□□□□ -1.01
CD44-220ENST00000525688 ZBTB3Q9H5J0 574 aa8.75□□□□□ -1.01
CD44-220ENST00000525688 HRCP23327 699 aa8.74□□□□□ -1.01
CD44-220ENST00000525688 SAMD7Q7Z3H4 446 aa8.74□□□□□ -1.01
CD44-220ENST00000525688 PCDHGC3Q9UN70 934 aa8.74□□□□□ -1.01
CD44-220ENST00000525688 NUTM2BA6NNL0 878 aaPredicted RBP8.73□□□□□ -1.01
CD44-220ENST00000525688 NUTM2EB1AL46 878 aaPredicted RBP8.73□□□□□ -1.01
CD44-220ENST00000525688 NUTM2DQ5VT03 806 aaPredicted RBP8.73□□□□□ -1.01
CD44-220ENST00000525688 NUTM2AQ8IVF1 878 aaPredicted RBP8.73□□□□□ -1.01
CD44-220ENST00000525688 CABLES1Q8TDN4 633 aa8.73□□□□□ -1.01
CD44-220ENST00000525688 GRIPAP1Q4V328 841 aa8.72□□□□□ -1.01
CD44-220ENST00000525688 POTEB3A0JP26 581 aa8.71□□□□□ -1.02
CD44-220ENST00000525688 AP1G2O75843 785 aa8.71□□□□□ -1.02
CD44-220ENST00000525688 POTEBQ6S5H4 581 aa8.71□□□□□ -1.02
CD44-220ENST00000525688 ZFRQ96KR1 1074 aaKnown RBP8.71□□□□□ -1.02
CD44-220ENST00000525688 HS3ST6Q96QI5 342 aa8.71□□□□□ -1.02
CD44-220ENST00000525688 CFHP08603 1231 aa8.7□□□□□ -1.02
CD44-220ENST00000525688 FUT2Q10981 343 aa8.7□□□□□ -1.02
CD44-220ENST00000525688 MTMR2Q13614 643 aa8.7□□□□□ -1.02
CD44-220ENST00000525688 NECTIN2Q92692 538 aa8.7□□□□□ -1.02
CD44-220ENST00000525688 PRM3Q9NNZ6 103 aa8.7□□□□□ -1.02
CD44-220ENST00000525688 USP17L8P0C7I0 530 aa8.69□□□□□ -1.02
CD44-220ENST00000525688 ATP6V1AP38606 617 aa8.69□□□□□ -1.02
CD44-220ENST00000525688 GUCA2AQ02747 115 aa8.69□□□□□ -1.02
CD44-220ENST00000525688 HLA-CQ95604 372 aa8.69□□□□□ -1.02
CD44-220ENST00000525688 ADGRD1Q6QNK2 874 aa8.68□□□□□ -1.02
CD44-220ENST00000525688 CCDC82Q8N4S0 544 aa8.68□□□□□ -1.02
CD44-220ENST00000525688 MRPL50Q8N5N7 158 aaKnown RBP8.68□□□□□ -1.02
CD44-220ENST00000525688 ARID3AQ99856 593 aa8.68□□□□□ -1.02
CD44-220ENST00000525688 GDPD2Q9HCC8 539 aa8.68□□□□□ -1.02
CD44-220ENST00000525688 ZNF777Q9ULD5 760 aaPredicted RBP8.68□□□□□ -1.02
CD44-220ENST00000525688 HRO43593 1189 aa8.67□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 56.9 ms