RNA–Protein interactions for RNA: ENST00000525293.5

CD44-216, Transcript of CD44 molecule (Indian blood group), human

TSL 3

Gene CD44, Length 569 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-216	ENST00000525293	APLP1	P51693	650 aa		6	□□□□□ -1.45
CD44-216	ENST00000525293	NLRP7	Q8WX94	980 aa		5.99	□□□□□ -1.45
CD44-216	ENST00000525293	NECTIN2	Q92692	538 aa		5.99	□□□□□ -1.45
CD44-216	ENST00000525293	ITGBL1	O95965	494 aa	Predicted RBP	5.98	□□□□□ -1.45
CD44-216	ENST00000525293	IFFO2	Q5TF58	517 aa		5.98	□□□□□ -1.45
CD44-216	ENST00000525293	PHOX2B	Q99453	314 aa		5.98	□□□□□ -1.45
CD44-216	ENST00000525293	IRF6	O14896	467 aa		5.97	□□□□□ -1.45
CD44-216	ENST00000525293	SLC10A3	P09131	477 aa		5.97	□□□□□ -1.45
CD44-216	ENST00000525293	KCNC4	Q03721	635 aa		5.97	□□□□□ -1.45
CD44-216	ENST00000525293	MAP2K5	Q13163	448 aa		5.97	□□□□□ -1.45
CD44-216	ENST00000525293	MTR	Q99707	1265 aa		5.97	□□□□□ -1.45
CD44-216	ENST00000525293	MINK1	Q8N4C8	1332 aa	Predicted RBP	5.97	□□□□□ -1.45
CD44-216	ENST00000525293	TJAP1	Q5JTD0	557 aa		5.96	□□□□□ -1.46
CD44-216	ENST00000525293	DAXX	Q9UER7	740 aa	Predicted RBP	5.96	□□□□□ -1.46
CD44-216	ENST00000525293	CFH	P08603	1231 aa		5.95	□□□□□ -1.46
CD44-216	ENST00000525293	COPS2	P61201	443 aa		5.95	□□□□□ -1.46
CD44-216	ENST00000525293	RSPH4A	Q5TD94	716 aa		5.95	□□□□□ -1.46
CD44-216	ENST00000525293	KRI1	Q8N9T8	703 aa	Known RBP	5.95	□□□□□ -1.46
CD44-216	ENST00000525293	ZC3H15	Q8WU90	426 aa	Known RBP	5.95	□□□□□ -1.46
CD44-216	ENST00000525293	IL21	Q9HBE4	155 aa		5.95	□□□□□ -1.46
CD44-216	ENST00000525293	DDX11L8	A8MPP1	907 aa		5.94	□□□□□ -1.46
CD44-216	ENST00000525293	KMT5B	Q4FZB7	885 aa		5.94	□□□□□ -1.46
CD44-216	ENST00000525293	ZNF516	Q92618	1163 aa		5.94	□□□□□ -1.46
CD44-216	ENST00000525293	CCDC102A	Q96A19	550 aa		5.94	□□□□□ -1.46
CD44-216	ENST00000525293	PRR14	Q9BWN1	585 aa		5.94	□□□□□ -1.46
CD44-216	ENST00000525293	PCDHB3	Q9Y5E6	796 aa		5.94	□□□□□ -1.46
CD44-216	ENST00000525293		A0A0G2JS52	829 aa		5.93	□□□□□ -1.46
CD44-216	ENST00000525293	ZMYND10	O75800	440 aa		5.93	□□□□□ -1.46
CD44-216	ENST00000525293	BARGIN	Q6ZT62	677 aa		5.93	□□□□□ -1.46
CD44-216	ENST00000525293	RDH13	Q8NBN7	331 aa		5.93	□□□□□ -1.46
CD44-216	ENST00000525293	ACTN4	O43707	911 aa	Known RBP	5.92	□□□□□ -1.46
CD44-216	ENST00000525293	RGS20	O76081	388 aa		5.92	□□□□□ -1.46
CD44-216	ENST00000525293	MDM2	Q00987	491 aa	Predicted RBP	5.92	□□□□□ -1.46
CD44-216	ENST00000525293	BLOC1S3	Q6QNY0	202 aa		5.91	□□□□□ -1.46
CD44-216	ENST00000525293	SULF1	Q8IWU6	871 aa		5.91	□□□□□ -1.46
CD44-216	ENST00000525293	NKX2-3	Q8TAU0	364 aa		5.91	□□□□□ -1.46
CD44-216	ENST00000525293	IRX2	Q9BZI1	471 aa	Predicted RBP	5.91	□□□□□ -1.46
CD44-216	ENST00000525293	ZPR1	O75312	459 aa		5.9	□□□□□ -1.46
CD44-216	ENST00000525293	BCAN	Q96GW7	911 aa		5.9	□□□□□ -1.46
CD44-216	ENST00000525293	PUS10	Q3MIT2	529 aa	Known RBP	5.89	□□□□□ -1.47
CD44-216	ENST00000525293	GCGR	P47871	477 aa		5.88	□□□□□ -1.47
CD44-216	ENST00000525293	NR1I2	O75469	434 aa		5.87	□□□□□ -1.47
CD44-216	ENST00000525293	CD46	P15529	392 aa		5.87	□□□□□ -1.47
CD44-216	ENST00000525293	CLCN1	P35523	988 aa		5.87	□□□□□ -1.47
CD44-216	ENST00000525293	FUT2	Q10981	343 aa		5.87	□□□□□ -1.47
CD44-216	ENST00000525293	PPP1R18	Q6NYC8	613 aa		5.87	□□□□□ -1.47
CD44-216	ENST00000525293	SCUBE3	Q8IX30	993 aa		5.87	□□□□□ -1.47
CD44-216	ENST00000525293	REPIN1	Q9BWE0	567 aa	Known RBP	5.87	□□□□□ -1.47
CD44-216	ENST00000525293	GPCPD1	Q9NPB8	672 aa		5.87	□□□□□ -1.47
CD44-216	ENST00000525293	TLL1	O43897	1013 aa		5.86	□□□□□ -1.47
CD44-216	ENST00000525293	ATP6V1A	P38606	617 aa		5.86	□□□□□ -1.47
CD44-216	ENST00000525293	TMUB1	Q9BVT8	246 aa		5.86	□□□□□ -1.47
CD44-216	ENST00000525293	EIF4ENIF1	Q9NRA8	985 aa	Known RBP	5.86	□□□□□ -1.47
CD44-216	ENST00000525293	TTLL12	Q14166	644 aa	Predicted RBP	5.85	□□□□□ -1.47
CD44-216	ENST00000525293	MORN1	Q5T089	497 aa		5.85	□□□□□ -1.47
CD44-216	ENST00000525293	FAM217B	Q9NTX9	383 aa	Predicted RBP	5.85	□□□□□ -1.47
CD44-216	ENST00000525293	TRIM66	O15016	1216 aa		5.84	□□□□□ -1.47
CD44-216	ENST00000525293	GGCX	P38435	758 aa		5.84	□□□□□ -1.47
CD44-216	ENST00000525293	AK7	Q96M32	723 aa		5.84	□□□□□ -1.47
CD44-216	ENST00000525293	KDM4A	O75164	1064 aa		5.83	□□□□□ -1.48
CD44-216	ENST00000525293	SSTR3	P32745	418 aa	Predicted RBP	5.83	□□□□□ -1.48
CD44-216	ENST00000525293	AMHR2	Q16671	573 aa		5.83	□□□□□ -1.48
CD44-216	ENST00000525293	SLC24A3	Q9HC58	644 aa		5.83	□□□□□ -1.48
CD44-216	ENST00000525293	SLC27A5	Q9Y2P5	690 aa		5.83	□□□□□ -1.48
CD44-216	ENST00000525293	S1PR4	O95977	384 aa		5.82	□□□□□ -1.48
CD44-216	ENST00000525293	ADH1B	P00325	375 aa		5.82	□□□□□ -1.48
CD44-216	ENST00000525293	GRIPAP1	Q4V328	841 aa		5.82	□□□□□ -1.48
CD44-216	ENST00000525293	SPSB2	Q99619	263 aa		5.82	□□□□□ -1.48
CD44-216	ENST00000525293	RNF223	E7ERA6	249 aa		5.81	□□□□□ -1.48
CD44-216	ENST00000525293	PPEF1	O14829	653 aa	Predicted RBP	5.81	□□□□□ -1.48
CD44-216	ENST00000525293	GIGYF2	Q6Y7W6	1299 aa	Known RBP	5.81	□□□□□ -1.48
CD44-216	ENST00000525293	NUTM1	Q86Y26	1132 aa		5.81	□□□□□ -1.48
CD44-216	ENST00000525293	PRKD2	Q9BZL6	878 aa		5.81	□□□□□ -1.48
CD44-216	ENST00000525293	SLC6A16	Q9GZN6	736 aa		5.81	□□□□□ -1.48
CD44-216	ENST00000525293	FMNL1	O95466	1100 aa	Predicted RBP	5.8	□□□□□ -1.48
CD44-216	ENST00000525293	USP46	P62068	366 aa		5.8	□□□□□ -1.48
CD44-216	ENST00000525293	PARP9	Q8IXQ6	854 aa		5.8	□□□□□ -1.48
CD44-216	ENST00000525293	HLA-C	Q95604	372 aa		5.8	□□□□□ -1.48
CD44-216	ENST00000525293	THAP11	Q96EK4	314 aa		5.8	□□□□□ -1.48
CD44-216	ENST00000525293	HOXA2	O43364	376 aa		5.79	□□□□□ -1.48
CD44-216	ENST00000525293	BRICD5	Q6PL45	260 aa		5.79	□□□□□ -1.48
CD44-216	ENST00000525293	RNF19B	Q6ZMZ0	732 aa		5.79	□□□□□ -1.48
CD44-216	ENST00000525293	GUCA2A	Q02747	115 aa		5.78	□□□□□ -1.48
CD44-216	ENST00000525293	PDE4D	Q08499	809 aa		5.78	□□□□□ -1.48
CD44-216	ENST00000525293	FAM160A2	Q8N612	972 aa	Predicted RBP	5.78	□□□□□ -1.48
CD44-216	ENST00000525293	ANKLE1	Q8NAG6	615 aa		5.78	□□□□□ -1.48
CD44-216	ENST00000525293	BEGAIN	Q9BUH8	593 aa		5.78	□□□□□ -1.48
CD44-216	ENST00000525293	SALL2	Q9Y467	1007 aa	Predicted RBP	5.78	□□□□□ -1.48
CD44-216	ENST00000525293	MS4A1	P11836	297 aa		5.77	□□□□□ -1.49
CD44-216	ENST00000525293		Q3C1V9	767 aa		5.77	□□□□□ -1.49
CD44-216	ENST00000525293		Q6ZNB5	142 aa		5.77	□□□□□ -1.49
CD44-216	ENST00000525293	SPIRE2	Q8WWL2	714 aa		5.77	□□□□□ -1.49
CD44-216	ENST00000525293		V9GY48	417 aa	Predicted RBP	5.77	□□□□□ -1.49
CD44-216	ENST00000525293	SLC19A1	P41440	591 aa		5.76	□□□□□ -1.49
CD44-216	ENST00000525293	PRDM9	Q9NQV7	894 aa		5.76	□□□□□ -1.49
CD44-216	ENST00000525293	NDUFV2	P19404	249 aa		5.75	□□□□□ -1.49
CD44-216	ENST00000525293	SYMPK	Q92797	1274 aa	Known RBP	5.75	□□□□□ -1.49
CD44-216	ENST00000525293	EMID1	Q96A84	441 aa	Predicted RBP	5.75	□□□□□ -1.49
CD44-216	ENST00000525293	MOXD2P	A6NHM9	499 aa		5.74	□□□□□ -1.49
CD44-216	ENST00000525293	LCE2B	O14633	110 aa		5.74	□□□□□ -1.49

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