RNA–Protein interactions for RNA: ENST00000524288.1

SKP1-213, Transcript of S-phase kinase associated protein 1, humanhuman

TSL 1 (best)

Gene SKP1, Length 732 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKP1-213ENST00000524288 GPR37O15354 613 aa12.66□□□□□ -0.38
SKP1-213ENST00000524288 PRR14Q9BWN1 585 aa12.66□□□□□ -0.38
SKP1-213ENST00000524288 RCCD1A6NED2 376 aa12.65□□□□□ -0.38
SKP1-213ENST00000524288 GPIHBP1Q8IV16 184 aa12.64□□□□□ -0.39
SKP1-213ENST00000524288 PXYLP1Q8TE99 480 aa12.64□□□□□ -0.39
SKP1-213ENST00000524288 TJAP1Q5JTD0 557 aa12.63□□□□□ -0.39
SKP1-213ENST00000524288 APLP1P51693 650 aa12.62□□□□□ -0.39
SKP1-213ENST00000524288 FAM161AQ3B820 660 aa12.62□□□□□ -0.39
SKP1-213ENST00000524288 IL21Q9HBE4 155 aa12.62□□□□□ -0.39
SKP1-213ENST00000524288 METTL3Q86U44 580 aaKnown RBP12.61□□□□□ -0.39
SKP1-213ENST00000524288 MTRQ99707 1265 aa12.61□□□□□ -0.39
SKP1-213ENST00000524288 FECHP22830 423 aa12.57□□□□□ -0.4
SKP1-213ENST00000524288 KMT5BQ4FZB7 885 aa12.55□□□□□ -0.4
SKP1-213ENST00000524288 RSPH4AQ5TD94 716 aa12.54□□□□□ -0.4
SKP1-213ENST00000524288 PCDHB3Q9Y5E6 796 aa12.52□□□□□ -0.41
SKP1-213ENST00000524288 ACTN4O43707 911 aaKnown RBP12.5□□□□□ -0.41
SKP1-213ENST00000524288 CFHP08603 1231 aa12.5□□□□□ -0.41
SKP1-213ENST00000524288 DAXXQ9UER7 740 aaPredicted RBP12.5□□□□□ -0.41
SKP1-213ENST00000524288 SLC10A3P09131 477 aa12.48□□□□□ -0.41
SKP1-213ENST00000524288 COPS2P61201 443 aa12.48□□□□□ -0.41
SKP1-213ENST00000524288 MAP2K5Q13163 448 aa12.48□□□□□ -0.41
SKP1-213ENST00000524288 ZNF516Q92618 1163 aa12.48□□□□□ -0.41
SKP1-213ENST00000524288 ZPR1O75312 459 aa12.47□□□□□ -0.41
SKP1-213ENST00000524288 LMOD2Q6P5Q4 547 aa12.45□□□□□ -0.42
SKP1-213ENST00000524288 DHX30Q7L2E3 1194 aaKnown RBP eCLIP12.45□□□□□ -0.42
SKP1-213ENST00000524288 SULF1Q8IWU6 871 aa12.45□□□□□ -0.42
SKP1-213ENST00000524288 GGCXP38435 758 aa12.44□□□□□ -0.42
SKP1-213ENST00000524288 BLOC1S3Q6QNY0 202 aa12.44□□□□□ -0.42
SKP1-213ENST00000524288 MINK1Q8N4C8 1332 aaPredicted RBP12.43□□□□□ -0.42
SKP1-213ENST00000524288 PPP1R18Q6NYC8 613 aa12.42□□□□□ -0.42
SKP1-213ENST00000524288 PHOX2BQ99453 314 aa12.42□□□□□ -0.42
SKP1-213ENST00000524288 IRF6O14896 467 aa12.41□□□□□ -0.42
SKP1-213ENST00000524288 TMUB1Q9BVT8 246 aa12.41□□□□□ -0.42
SKP1-213ENST00000524288 EIF4ENIF1Q9NRA8 985 aaKnown RBP12.41□□□□□ -0.42
SKP1-213ENST00000524288 NR1I2O75469 434 aa12.4□□□□□ -0.42
SKP1-213ENST00000524288 RDH13Q8NBN7 331 aa12.4□□□□□ -0.42
SKP1-213ENST00000524288 NKX2-3Q8TAU0 364 aa12.4□□□□□ -0.42
SKP1-213ENST00000524288 DDX11L8A8MPP1 907 aa12.38□□□□□ -0.43
SKP1-213ENST00000524288 IRX2Q9BZI1 471 aaPredicted RBP12.38□□□□□ -0.43
SKP1-213ENST00000524288 NLRP7Q8WX94 980 aa12.36□□□□□ -0.43
SKP1-213ENST00000524288 V9GY48 417 aaPredicted RBP12.35□□□□□ -0.43
SKP1-213ENST00000524288 GCGRP47871 477 aa12.34□□□□□ -0.43
SKP1-213ENST00000524288 CCDC102AQ96A19 550 aa12.34□□□□□ -0.43
SKP1-213ENST00000524288 ADH1BP00325 375 aa12.33□□□□□ -0.44
SKP1-213ENST00000524288 TLL1O43897 1013 aa12.32□□□□□ -0.44
SKP1-213ENST00000524288 PRKD2Q9BZL6 878 aa12.32□□□□□ -0.44
SKP1-213ENST00000524288 ATP6V1AP38606 617 aa12.31□□□□□ -0.44
SKP1-213ENST00000524288 SCUBE3Q8IX30 993 aa12.31□□□□□ -0.44
SKP1-213ENST00000524288 FUT2Q10981 343 aa12.3□□□□□ -0.44
SKP1-213ENST00000524288 PUS10Q3MIT2 529 aaKnown RBP12.29□□□□□ -0.44
SKP1-213ENST00000524288 GRIPAP1Q4V328 841 aa12.29□□□□□ -0.44
SKP1-213ENST00000524288 MORN1Q5T089 497 aa12.29□□□□□ -0.44
SKP1-213ENST00000524288 CD46P15529 392 aa12.28□□□□□ -0.44
SKP1-213ENST00000524288 RNF223E7ERA6 249 aa12.27□□□□□ -0.45
SKP1-213ENST00000524288 ZMYND10O75800 440 aa12.27□□□□□ -0.45
SKP1-213ENST00000524288 CLCN1P35523 988 aa12.27□□□□□ -0.45
SKP1-213ENST00000524288 MDM2Q00987 491 aaPredicted RBP12.27□□□□□ -0.45
SKP1-213ENST00000524288 LAPTM4AQ15012 233 aa12.27□□□□□ -0.45
SKP1-213ENST00000524288 BARGINQ6ZT62 677 aa12.27□□□□□ -0.45
SKP1-213ENST00000524288 ANKLE1Q8NAG6 615 aa12.27□□□□□ -0.45
SKP1-213ENST00000524288 GPCPD1Q9NPB8 672 aa12.26□□□□□ -0.45
SKP1-213ENST00000524288 SALL2Q9Y467 1007 aaPredicted RBP12.26□□□□□ -0.45
SKP1-213ENST00000524288 ZC3H15Q8WU90 426 aaKnown RBP12.25□□□□□ -0.45
SKP1-213ENST00000524288 SPSB2Q99619 263 aa12.25□□□□□ -0.45
SKP1-213ENST00000524288 SLC6A16Q9GZN6 736 aa12.25□□□□□ -0.45
SKP1-213ENST00000524288 S1PR4O95977 384 aa12.24□□□□□ -0.45
SKP1-213ENST00000524288 KRI1Q8N9T8 703 aaKnown RBP12.24□□□□□ -0.45
SKP1-213ENST00000524288 FMNL1O95466 1100 aaPredicted RBP12.22□□□□□ -0.45
SKP1-213ENST00000524288 USP46P62068 366 aa12.22□□□□□ -0.45
SKP1-213ENST00000524288 THAP11Q96EK4 314 aa12.22□□□□□ -0.45
SKP1-213ENST00000524288 FAM217BQ9NTX9 383 aaPredicted RBP12.21□□□□□ -0.45
SKP1-213ENST00000524288 SLC27A5Q9Y2P5 690 aa12.21□□□□□ -0.45
SKP1-213ENST00000524288 KDM4AO75164 1064 aa12.2□□□□□ -0.46
SKP1-213ENST00000524288 Q3C1V9 767 aa12.19□□□□□ -0.46
SKP1-213ENST00000524288 SLC19A1P41440 591 aa12.18□□□□□ -0.46
SKP1-213ENST00000524288 AMHR2Q16671 573 aa12.17□□□□□ -0.46
SKP1-213ENST00000524288 BRICD5Q6PL45 260 aa12.17□□□□□ -0.46
SKP1-213ENST00000524288 SLC24A3Q9HC58 644 aa12.17□□□□□ -0.46
SKP1-213ENST00000524288 PPEF1O14829 653 aaPredicted RBP12.15□□□□□ -0.46
SKP1-213ENST00000524288 GFRA3O60609 400 aa12.15□□□□□ -0.46
SKP1-213ENST00000524288 MSS51Q4VC12 460 aa12.15□□□□□ -0.46
SKP1-213ENST00000524288 NRG2O14511 850 aaPredicted RBP12.14□□□□□ -0.47
SKP1-213ENST00000524288 SPRYD7Q5W111 196 aa12.13□□□□□ -0.47
SKP1-213ENST00000524288 EMID1Q96A84 441 aaPredicted RBP12.13□□□□□ -0.47
SKP1-213ENST00000524288 HOXA2O43364 376 aa12.12□□□□□ -0.47
SKP1-213ENST00000524288 TTLL12Q14166 644 aaPredicted RBP12.12□□□□□ -0.47
SKP1-213ENST00000524288 Q6ZNB5 142 aa12.12□□□□□ -0.47
SKP1-213ENST00000524288 ZNF598Q86UK7 904 aaKnown RBP12.12□□□□□ -0.47
SKP1-213ENST00000524288 FAM160A2Q8N612 972 aaPredicted RBP12.12□□□□□ -0.47
SKP1-213ENST00000524288 BRPF1P55201 1214 aaPredicted RBP12.11□□□□□ -0.47
SKP1-213ENST00000524288 RNF19BQ6ZMZ0 732 aa12.11□□□□□ -0.47
SKP1-213ENST00000524288 SSTR3P32745 418 aaPredicted RBP12.1□□□□□ -0.47
SKP1-213ENST00000524288 LIAT1Q6ZQX7 453 aa12.1□□□□□ -0.47
SKP1-213ENST00000524288 NUTM1Q86Y26 1132 aa12.1□□□□□ -0.47
SKP1-213ENST00000524288 REPIN1Q9BWE0 567 aaKnown RBP12.1□□□□□ -0.47
SKP1-213ENST00000524288 PDZRN3Q9UPQ7 1066 aa12.1□□□□□ -0.47
SKP1-213ENST00000524288 GTF3C3Q9Y5Q9 886 aa12.1□□□□□ -0.47
SKP1-213ENST00000524288 TMEM132AQ24JP5 1023 aa12.09□□□□□ -0.47
SKP1-213ENST00000524288 RPIAP49247 311 aa12.08□□□□□ -0.48
SKP1-213ENST00000524288 NEUROD2Q15784 382 aa12.08□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms