RNA–Protein interactions for RNA: ENST00000523867.5

HDAC9-227, Transcript of histone deacetylase 9, humanhuman

TSL 1 (best)

Gene HDAC9, Length 2,640 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC9-227ENST00000523867 ABCC2Q92887 1545 aa9.61□□□□□ -0.87
HDAC9-227ENST00000523867 BCORL1Q5H9F3 1711 aa9.61□□□□□ -0.87
HDAC9-227ENST00000523867 PSMD1Q99460 953 aa9.61□□□□□ -0.87
HDAC9-227ENST00000523867 GPATCH8Q9UKJ3 1502 aaKnown RBP9.6□□□□□ -0.87
HDAC9-227ENST00000523867 KIF14Q15058 1648 aa9.6□□□□□ -0.87
HDAC9-227ENST00000523867 HSP90AA1P07900 732 aaKnown RBP9.6□□□□□ -0.87
HDAC9-227ENST00000523867 CNPY4Q8N129 248 aa9.6□□□□□ -0.87
HDAC9-227ENST00000523867 CARD11Q9BXL7 1154 aa9.6□□□□□ -0.87
HDAC9-227ENST00000523867 ADGRL2O95490 1459 aa9.6□□□□□ -0.87
HDAC9-227ENST00000523867 CENPJQ9HC77 1338 aaPredicted RBP9.6□□□□□ -0.87
HDAC9-227ENST00000523867 ADGBQ8N7X0 1667 aa9.6□□□□□ -0.87
HDAC9-227ENST00000523867 SENP3-EIF4A1A0A087X0R7 540 aa9.6□□□□□ -0.87
HDAC9-227ENST00000523867 ITSN2Q9NZM3 1697 aa9.59□□□□□ -0.87
HDAC9-227ENST00000523867 KDM5CP41229 1560 aa9.59□□□□□ -0.87
HDAC9-227ENST00000523867 CLSTN1O94985 981 aa9.59□□□□□ -0.87
HDAC9-227ENST00000523867 LAS1LQ9Y4W2 734 aaKnown RBP9.59□□□□□ -0.87
HDAC9-227ENST00000523867 PTPRGP23470 1445 aa9.59□□□□□ -0.87
HDAC9-227ENST00000523867 ANKRD50Q9ULJ7 1429 aa9.59□□□□□ -0.87
HDAC9-227ENST00000523867 KIF15Q9NS87 1388 aa9.58□□□□□ -0.88
HDAC9-227ENST00000523867 DDRGK1Q96HY6 314 aa9.58□□□□□ -0.88
HDAC9-227ENST00000523867 UHRF1BP1Q6BDS2 1440 aa9.58□□□□□ -0.88
HDAC9-227ENST00000523867 NUP155O75694 1391 aa9.58□□□□□ -0.88
HDAC9-227ENST00000523867 FRAT1Q92837 279 aaPredicted RBP9.58□□□□□ -0.88
HDAC9-227ENST00000523867 RALGAPBQ86X10 1494 aa9.57□□□□□ -0.88
HDAC9-227ENST00000523867 KDM4FA0A1W2PPD8 638 aa9.57□□□□□ -0.88
HDAC9-227ENST00000523867 ST20-MTHFSA0A0A6YYL1 179 aa9.56□□□□□ -0.88
HDAC9-227ENST00000523867 NCLP19338 710 aaKnown RBP9.56□□□□□ -0.88
HDAC9-227ENST00000523867 RALBP1Q15311 655 aa9.56□□□□□ -0.88
HDAC9-227ENST00000523867 BBXQ8WY36 941 aaPredicted RBP9.56□□□□□ -0.88
HDAC9-227ENST00000523867 MYBBP1AQ9BQG0 1328 aaKnown RBP9.56□□□□□ -0.88
HDAC9-227ENST00000523867 CROCC2H7BZ55 1655 aa9.56□□□□□ -0.88
HDAC9-227ENST00000523867 TCERG1O14776 1098 aaKnown RBP9.55□□□□□ -0.88
HDAC9-227ENST00000523867 CALD1Q05682 793 aaKnown RBP9.55□□□□□ -0.88
HDAC9-227ENST00000523867 PPRC1Q5VV67 1664 aaKnown RBP9.55□□□□□ -0.88
HDAC9-227ENST00000523867 BRD4O60885 1362 aaPredicted RBP9.55□□□□□ -0.88
HDAC9-227ENST00000523867 KTN1Q86UP2 1357 aaKnown RBP9.55□□□□□ -0.88
HDAC9-227ENST00000523867 MAP3K4Q9Y6R4 1608 aa9.55□□□□□ -0.88
HDAC9-227ENST00000523867 TSPY4P0CV99 314 aa9.55□□□□□ -0.88
HDAC9-227ENST00000523867 TSPY10P0CW01 314 aa9.55□□□□□ -0.88
HDAC9-227ENST00000523867 MAPK8IP2Q13387 824 aaPredicted RBP9.55□□□□□ -0.88
HDAC9-227ENST00000523867 DCAF11Q8TEB1 546 aa9.55□□□□□ -0.88
HDAC9-227ENST00000523867 LRPPRCP42704 1394 aaKnown RBP9.55□□□□□ -0.88
HDAC9-227ENST00000523867 ARHGEF12Q9NZN5 1544 aa9.55□□□□□ -0.88
HDAC9-227ENST00000523867 PLEKHD1A6NEE1 506 aa9.54□□□□□ -0.88
HDAC9-227ENST00000523867 ASXL2Q76L83 1435 aa9.54□□□□□ -0.88
HDAC9-227ENST00000523867 MS4A1P11836 297 aa9.54□□□□□ -0.88
HDAC9-227ENST00000523867 NFKBIBQ15653 356 aa9.54□□□□□ -0.88
HDAC9-227ENST00000523867 C9orf84Q5VXU9 1444 aa9.54□□□□□ -0.88
HDAC9-227ENST00000523867 RRP1P56182 461 aaKnown RBP9.52□□□□□ -0.88
HDAC9-227ENST00000523867 SHANK2Q9UPX8 1470 aa9.52□□□□□ -0.89
HDAC9-227ENST00000523867 TSPOAP1O95153 1857 aa9.52□□□□□ -0.89
HDAC9-227ENST00000523867 ADGRL1O94910 1474 aa9.51□□□□□ -0.89
HDAC9-227ENST00000523867 RCAN3Q9UKA8 241 aa9.51□□□□□ -0.89
HDAC9-227ENST00000523867 CLCN1P35523 988 aa9.51□□□□□ -0.89
HDAC9-227ENST00000523867 NLRP13Q86W25 1043 aa9.51□□□□□ -0.89
HDAC9-227ENST00000523867 PDCL3Q9H2J4 239 aa9.51□□□□□ -0.89
HDAC9-227ENST00000523867 KDM5DQ9BY66 1539 aa9.5□□□□□ -0.89
HDAC9-227ENST00000523867 L1TD1Q5T7N2 865 aaKnown RBP9.5□□□□□ -0.89
HDAC9-227ENST00000523867 EXOC6Q8TAG9 804 aa9.5□□□□□ -0.89
HDAC9-227ENST00000523867 RRAGDQ9NQL2 400 aaPredicted RBP9.5□□□□□ -0.89
HDAC9-227ENST00000523867 HNRNPMP52272 730 aaKnown RBP eCLIP9.5□□□□□ -0.89
HDAC9-227ENST00000523867 PDE3BQ13370 1112 aa9.5□□□□□ -0.89
HDAC9-227ENST00000523867 PRDM4Q9UKN5 801 aa9.5□□□□□ -0.89
HDAC9-227ENST00000523867 NAP1L2Q9ULW6 460 aaPredicted RBP9.5□□□□□ -0.89
HDAC9-227ENST00000523867 BACH2Q9BYV9 841 aa9.49□□□□□ -0.89
HDAC9-227ENST00000523867 PNNQ9H307 717 aaKnown RBP9.49□□□□□ -0.89
HDAC9-227ENST00000523867 SLC4A2P04920 1241 aa9.49□□□□□ -0.89
HDAC9-227ENST00000523867 CDC42BPAQ5VT25 1732 aa9.48□□□□□ -0.89
HDAC9-227ENST00000523867 ZCCHC11Q5TAX3 1644 aaKnown RBP9.48□□□□□ -0.89
HDAC9-227ENST00000523867 KDM4AO75164 1064 aa9.48□□□□□ -0.89
HDAC9-227ENST00000523867 PDE4AP27815 886 aa9.48□□□□□ -0.89
HDAC9-227ENST00000523867 PARD3Q8TEW0 1356 aa9.48□□□□□ -0.89
HDAC9-227ENST00000523867 ATP10BO94823 1461 aa9.47□□□□□ -0.89
HDAC9-227ENST00000523867 TEX2Q8IWB9 1127 aa9.47□□□□□ -0.89
HDAC9-227ENST00000523867 RGL3Q3MIN7 710 aa9.47□□□□□ -0.89
HDAC9-227ENST00000523867 E9PCH4 1651 aa9.46□□□□□ -0.89
HDAC9-227ENST00000523867 WDR7Q9Y4E6 1490 aa9.46□□□□□ -0.89
HDAC9-227ENST00000523867 CC2D2BQ6DHV5 1058 aa9.46□□□□□ -0.89
HDAC9-227ENST00000523867 CCDC144AA2RUR9 1427 aa9.46□□□□□ -0.89
HDAC9-227ENST00000523867 APBB1O00213 710 aa9.46□□□□□ -0.9
HDAC9-227ENST00000523867 TPM2P07951 284 aa9.46□□□□□ -0.9
HDAC9-227ENST00000523867 SECISBP2LQ93073 1101 aaKnown RBP9.46□□□□□ -0.9
HDAC9-227ENST00000523867 PRAG1Q86YV5 1406 aa9.46□□□□□ -0.9
HDAC9-227ENST00000523867 ABCA8O94911 1581 aa9.45□□□□□ -0.9
HDAC9-227ENST00000523867 PER1O15534 1290 aaPredicted RBP9.45□□□□□ -0.9
HDAC9-227ENST00000523867 CCDC27Q2M243 656 aa9.45□□□□□ -0.9
HDAC9-227ENST00000523867 NBPF1Q3BBV0 1214 aa9.45□□□□□ -0.9
HDAC9-227ENST00000523867 FAM135AQ9P2D6 1515 aa9.45□□□□□ -0.9
HDAC9-227ENST00000523867 CDCA7LQ96GN5 454 aa9.45□□□□□ -0.9
HDAC9-227ENST00000523867 CC2D1BQ5T0F9 858 aaKnown RBP9.44□□□□□ -0.9
HDAC9-227ENST00000523867 FAM43BQ6ZT52 329 aaPredicted RBP9.44□□□□□ -0.9
HDAC9-227ENST00000523867 ILDR1Q86SU0 546 aaPredicted RBP9.44□□□□□ -0.9
HDAC9-227ENST00000523867 ARHGEF5Q12774 1597 aa9.44□□□□□ -0.9
HDAC9-227ENST00000523867 HECW2Q9P2P5 1572 aa9.44□□□□□ -0.9
HDAC9-227ENST00000523867 KCNG1Q9UIX4 513 aa9.44□□□□□ -0.9
HDAC9-227ENST00000523867 CCDC141Q6ZP82 1450 aa9.43□□□□□ -0.9
HDAC9-227ENST00000523867 NEUROD2Q15784 382 aa9.43□□□□□ -0.9
HDAC9-227ENST00000523867 AEBP1Q8IUX7 1158 aa9.43□□□□□ -0.9
HDAC9-227ENST00000523867 WWC1Q8IX03 1113 aa9.43□□□□□ -0.9
HDAC9-227ENST00000523867 SPRYD3Q8NCJ5 442 aa9.43□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms