RNA–Protein interactions for RNA: ENST00000522240.1

CPNE3-205, Transcript of copine 3, humanhuman

TSL 3

Gene CPNE3, Length 446 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE3-205ENST00000522240 NLRP1Q9C000 1473 aa18.78■□□□□ 0.6
CPNE3-205ENST00000522240 FBXO31Q5XUX0 539 aaPredicted RBP18.78■□□□□ 0.6
CPNE3-205ENST00000522240 UHRF1BP1Q6BDS2 1440 aa18.77■□□□□ 0.6
CPNE3-205ENST00000522240 PPP1R15AO75807 674 aaPredicted RBP18.77■□□□□ 0.6
CPNE3-205ENST00000522240 MYOM2P54296 1465 aa18.76■□□□□ 0.59
CPNE3-205ENST00000522240 MYO3AQ8NEV4 1616 aa18.74■□□□□ 0.59
CPNE3-205ENST00000522240 PPLO60437 1756 aa18.74■□□□□ 0.59
CPNE3-205ENST00000522240 HSPA2P54652 639 aa18.74■□□□□ 0.59
CPNE3-205ENST00000522240 STAC3Q96MF2 364 aa18.74■□□□□ 0.59
CPNE3-205ENST00000522240 IDI1Q13907 227 aa18.73■□□□□ 0.59
CPNE3-205ENST00000522240 MYO5BQ9ULV0 1848 aa18.72■□□□□ 0.59
CPNE3-205ENST00000522240 NEXMIFQ5QGS0 1516 aa18.72■□□□□ 0.59
CPNE3-205ENST00000522240 UBR1Q8IWV7 1749 aa18.71■□□□□ 0.59
CPNE3-205ENST00000522240 ZNF142P52746 1687 aaPredicted RBP18.71■□□□□ 0.59
CPNE3-205ENST00000522240 RPGRIP1LQ68CZ1 1315 aa18.71■□□□□ 0.59
CPNE3-205ENST00000522240 A2ML1A8K2U0 1454 aa18.71■□□□□ 0.59
CPNE3-205ENST00000522240 PRAG1Q86YV5 1406 aa18.7■□□□□ 0.58
CPNE3-205ENST00000522240 RGL3Q3MIN7 710 aa18.69■□□□□ 0.58
CPNE3-205ENST00000522240 RALGAPBQ86X10 1494 aa18.69■□□□□ 0.58
CPNE3-205ENST00000522240 NRXN1Q9ULB1 1477 aa18.69■□□□□ 0.58
CPNE3-205ENST00000522240 TRPM1Q7Z4N2 1603 aa18.68■□□□□ 0.58
CPNE3-205ENST00000522240 CEBPAP49715 358 aaPredicted RBP18.68■□□□□ 0.58
CPNE3-205ENST00000522240 DCAF11Q8TEB1 546 aa18.68■□□□□ 0.58
CPNE3-205ENST00000522240 CEP170BQ9Y4F5 1589 aaPredicted RBP18.67■□□□□ 0.58
CPNE3-205ENST00000522240 ZFYVE9O95405 1425 aa18.66■□□□□ 0.58
CPNE3-205ENST00000522240 KIAA1210Q9ULL0 1709 aa18.66■□□□□ 0.58
CPNE3-205ENST00000522240 CHGAP10645 457 aaKnown RBP18.66■□□□□ 0.58
CPNE3-205ENST00000522240 CERKQ8TCT0 537 aa18.66■□□□□ 0.58
CPNE3-205ENST00000522240 SETD1BQ9UPS6 1966 aaKnown RBP18.64■□□□□ 0.58
CPNE3-205ENST00000522240 LAMC1P11047 1609 aa18.64■□□□□ 0.57
CPNE3-205ENST00000522240 ZNF326Q5BKZ1 582 aaKnown RBP18.64■□□□□ 0.57
CPNE3-205ENST00000522240 NBPF8Q3BBV2 869 aa18.63■□□□□ 0.57
CPNE3-205ENST00000522240 STAG3Q9UJ98 1225 aa18.62■□□□□ 0.57
CPNE3-205ENST00000522240 SLIT1O75093 1534 aa18.61■□□□□ 0.57
CPNE3-205ENST00000522240 PIK3C2GO75747 1445 aa18.61■□□□□ 0.57
CPNE3-205ENST00000522240 KDM2AQ9Y2K7 1162 aa18.61■□□□□ 0.57
CPNE3-205ENST00000522240 ARHGAP23Q9P227 1491 aa18.6■□□□□ 0.57
CPNE3-205ENST00000522240 RIMS2Q9UQ26 1411 aa18.6■□□□□ 0.57
CPNE3-205ENST00000522240 GPRASP1Q5JY77 1395 aa18.59■□□□□ 0.57
CPNE3-205ENST00000522240 TMEM2Q9UHN6 1383 aa18.58■□□□□ 0.57
CPNE3-205ENST00000522240 SETBP1Q9Y6X0 1596 aa18.57■□□□□ 0.56
CPNE3-205ENST00000522240 VGFO15240 615 aaPredicted RBP18.57■□□□□ 0.56
CPNE3-205ENST00000522240 ADGRF5Q8IZF2 1346 aa18.56■□□□□ 0.56
CPNE3-205ENST00000522240 ABCF1Q8NE71 845 aaKnown RBP eCLIP18.56■□□□□ 0.56
CPNE3-205ENST00000522240 ROCK2O75116 1388 aaKnown RBP18.55■□□□□ 0.56
CPNE3-205ENST00000522240 IQGAP1P46940 1657 aa18.53■□□□□ 0.56
CPNE3-205ENST00000522240 HDGFP51858 240 aaKnown RBP18.52■□□□□ 0.56
CPNE3-205ENST00000522240 THEMISQ8N1K5 641 aaPredicted RBP18.52■□□□□ 0.56
CPNE3-205ENST00000522240 NRXN3Q9Y4C0 1643 aa18.52■□□□□ 0.55
CPNE3-205ENST00000522240 STRCQ7RTU9 1775 aa18.51■□□□□ 0.55
CPNE3-205ENST00000522240 SLC4A2P04920 1241 aa18.51■□□□□ 0.55
CPNE3-205ENST00000522240 SETD1AO15047 1707 aaKnown RBP18.51■□□□□ 0.55
CPNE3-205ENST00000522240 ADGRB1O14514 1584 aa18.51■□□□□ 0.55
CPNE3-205ENST00000522240 SCAF11Q99590 1463 aaKnown RBP18.5■□□□□ 0.55
CPNE3-205ENST00000522240 PLEKHG1Q9ULL1 1385 aa18.49■□□□□ 0.55
CPNE3-205ENST00000522240 ALKQ9UM73 1620 aa18.49■□□□□ 0.55
CPNE3-205ENST00000522240 ASXL1Q8IXJ9 1541 aa18.49■□□□□ 0.55
CPNE3-205ENST00000522240 DIP2AQ14689 1571 aa18.48■□□□□ 0.55
CPNE3-205ENST00000522240 USP47Q96K76 1375 aa18.47■□□□□ 0.55
CPNE3-205ENST00000522240 POLR1AO95602 1720 aaPredicted RBP18.47■□□□□ 0.55
CPNE3-205ENST00000522240 CARD11Q9BXL7 1154 aa18.47■□□□□ 0.55
CPNE3-205ENST00000522240 C14orf93Q9H972 538 aaKnown RBP18.47■□□□□ 0.55
CPNE3-205ENST00000522240 EIF4G2P78344 907 aaKnown RBP eCLIP18.46■□□□□ 0.55
CPNE3-205ENST00000522240 EID1Q9Y6B2 187 aa18.46■□□□□ 0.55
CPNE3-205ENST00000522240 NBPF1Q3BBV0 1214 aa18.45■□□□□ 0.54
CPNE3-205ENST00000522240 CFAP70Q5T0N1 1121 aa18.45■□□□□ 0.54
CPNE3-205ENST00000522240 NUTM2DQ5VT03 806 aaPredicted RBP18.44■□□□□ 0.54
CPNE3-205ENST00000522240 ZNF316A6NFI3 1004 aaPredicted RBP18.43■□□□□ 0.54
CPNE3-205ENST00000522240 MED14O60244 1454 aa18.42■□□□□ 0.54
CPNE3-205ENST00000522240 LTKP29376 864 aa18.42■□□□□ 0.54
CPNE3-205ENST00000522240 EIF3AQ14152 1382 aaKnown RBP18.42■□□□□ 0.54
CPNE3-205ENST00000522240 ADAMTS13Q76LX8 1427 aa18.41■□□□□ 0.54
CPNE3-205ENST00000522240 KNDC1Q76NI1 1749 aa18.41■□□□□ 0.54
CPNE3-205ENST00000522240 HSPA5P11021 654 aaKnown RBP18.41■□□□□ 0.54
CPNE3-205ENST00000522240 TXNDC2Q86VQ3 553 aa18.41■□□□□ 0.54
CPNE3-205ENST00000522240 ARHGEF28Q8N1W1 1705 aaKnown RBP18.4■□□□□ 0.54
CPNE3-205ENST00000522240 IQSEC2Q5JU85 1478 aa18.4■□□□□ 0.54
CPNE3-205ENST00000522240 ANKLE2Q86XL3 938 aa18.38■□□□□ 0.53
CPNE3-205ENST00000522240 DLC1Q96QB1 1528 aa18.38■□□□□ 0.53
CPNE3-205ENST00000522240 YTHDC2Q9H6S0 1430 aaKnown RBP18.37■□□□□ 0.53
CPNE3-205ENST00000522240 LTBP4Q8N2S1 1624 aa18.36■□□□□ 0.53
CPNE3-205ENST00000522240 CPS1P31327 1500 aa18.35■□□□□ 0.53
CPNE3-205ENST00000522240 TECPR2O15040 1411 aa18.35■□□□□ 0.53
CPNE3-205ENST00000522240 LRPPRCP42704 1394 aaKnown RBP18.35■□□□□ 0.53
CPNE3-205ENST00000522240 NPHP4O75161 1426 aaPredicted RBP18.34■□□□□ 0.53
CPNE3-205ENST00000522240 SBNO2Q9Y2G9 1366 aa18.34■□□□□ 0.53
CPNE3-205ENST00000522240 QRICH2Q9H0J4 1663 aa18.34■□□□□ 0.53
CPNE3-205ENST00000522240 PIK3R4Q99570 1358 aa18.33■□□□□ 0.53
CPNE3-205ENST00000522240 DISP3Q9P2K9 1392 aa18.33■□□□□ 0.53
CPNE3-205ENST00000522240 METP08581 1390 aa18.32■□□□□ 0.52
CPNE3-205ENST00000522240 TMEM132EQ6IEE7 984 aa18.32■□□□□ 0.52
CPNE3-205ENST00000522240 TBX22Q9Y458 520 aa18.32■□□□□ 0.52
CPNE3-205ENST00000522240 XRN1Q8IZH2 1706 aaKnown RBP18.32■□□□□ 0.52
CPNE3-205ENST00000522240 ABCC11Q96J66 1382 aa18.31■□□□□ 0.52
CPNE3-205ENST00000522240 ST20-MTHFSA0A0A6YYL1 179 aa18.31■□□□□ 0.52
CPNE3-205ENST00000522240 MYCNP04198 464 aaPredicted RBP18.31■□□□□ 0.52
CPNE3-205ENST00000522240 BCANQ96GW7 911 aa18.3■□□□□ 0.52
CPNE3-205ENST00000522240 CENPJQ9HC77 1338 aaPredicted RBP18.28■□□□□ 0.52
CPNE3-205ENST00000522240 SLC24A1O60721 1099 aa18.28■□□□□ 0.52
CPNE3-205ENST00000522240 HIRIP3Q9BW71 556 aaPredicted RBP18.28■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 55.9 ms