RNA–Protein interactions for RNA: ENST00000521713.1

USP42-207, Transcript of ubiquitin specific peptidase 42, humanhuman

TSL 5

Gene USP42, Length 5,017 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP42-207ENST00000521713 DCAF8Q5TAQ9 597 aa20.14■□□□□ 0.81
USP42-207ENST00000521713 PROSER2Q86WR7 435 aaPredicted RBP20.14■□□□□ 0.81
USP42-207ENST00000521713 MEX3CQ5U5Q3 659 aaKnown RBP20.14■□□□□ 0.81
USP42-207ENST00000521713 IQGAP2Q13576 1575 aa20.14■□□□□ 0.81
USP42-207ENST00000521713 RAPGEF4Q8WZA2 1011 aa20.13■□□□□ 0.81
USP42-207ENST00000521713 GPRASP1Q5JY77 1395 aa20.13■□□□□ 0.81
USP42-207ENST00000521713 HSP90AA2PQ14568 343 aaPredicted RBP20.12■□□□□ 0.81
USP42-207ENST00000521713 NEXNQ0ZGT2 675 aa20.12■□□□□ 0.81
USP42-207ENST00000521713 ELL2O00472 640 aaPredicted RBP20.12■□□□□ 0.81
USP42-207ENST00000521713 APAF1O14727 1248 aa20.11■□□□□ 0.81
USP42-207ENST00000521713 CABP2Q9NPB3 220 aa20.11■□□□□ 0.81
USP42-207ENST00000521713 NLRP6P59044 892 aa20.11■□□□□ 0.81
USP42-207ENST00000521713 KIAA1107Q9UPP5 1409 aa20.11■□□□□ 0.81
USP42-207ENST00000521713 ZKSCAN2Q63HK3 967 aa20.1■□□□□ 0.81
USP42-207ENST00000521713 CCDC7Q96M83 1385 aa20.1■□□□□ 0.81
USP42-207ENST00000521713 GRIN2AQ12879 1464 aa20.1■□□□□ 0.81
USP42-207ENST00000521713 SYAP1Q96A49 352 aaPredicted RBP20.1■□□□□ 0.81
USP42-207ENST00000521713 EPRSP07814 1512 aaKnown RBP20.1■□□□□ 0.81
USP42-207ENST00000521713 RPGRIP1LQ68CZ1 1315 aa20.09■□□□□ 0.81
USP42-207ENST00000521713 TRIM6-TRIM34B2RNG4 842 aa20.09■□□□□ 0.81
USP42-207ENST00000521713 KIF7Q2M1P5 1343 aa20.09■□□□□ 0.81
USP42-207ENST00000521713 ANKLE2Q86XL3 938 aa20.09■□□□□ 0.81
USP42-207ENST00000521713 RIPK4P57078 832 aa20.08■□□□□ 0.81
USP42-207ENST00000521713 GNL2Q13823 731 aaKnown RBP20.08■□□□□ 0.81
USP42-207ENST00000521713 TULP1O00294 542 aaPredicted RBP20.08■□□□□ 0.81
USP42-207ENST00000521713 RUNDC1Q96C34 613 aa20.08■□□□□ 0.8
USP42-207ENST00000521713 FRAT2O75474 233 aaPredicted RBP20.08■□□□□ 0.8
USP42-207ENST00000521713 GGNBP2Q9H3C7 697 aa20.08■□□□□ 0.8
USP42-207ENST00000521713 CD109Q6YHK3 1445 aa20.07■□□□□ 0.8
USP42-207ENST00000521713 PEG3Q9GZU2 1588 aa20.07■□□□□ 0.8
USP42-207ENST00000521713 CUL7Q14999 1698 aa20.07■□□□□ 0.8
USP42-207ENST00000521713 TIAM1Q13009 1591 aa20.07■□□□□ 0.8
USP42-207ENST00000521713 DDX58O95786 925 aaKnown RBP20.06■□□□□ 0.8
USP42-207ENST00000521713 NLRP2Q9NX02 1062 aa20.05■□□□□ 0.8
USP42-207ENST00000521713 DAPK1P53355 1430 aa20.05■□□□□ 0.8
USP42-207ENST00000521713 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP20.05■□□□□ 0.8
USP42-207ENST00000521713 ZBED9Q6R2W3 1325 aa20.05■□□□□ 0.8
USP42-207ENST00000521713 PRAM1Q96QH2 718 aa20.05■□□□□ 0.8
USP42-207ENST00000521713 API5Q9BZZ5 524 aaKnown RBP20.04■□□□□ 0.8
USP42-207ENST00000521713 ESCO1Q5FWF5 840 aa20.04■□□□□ 0.8
USP42-207ENST00000521713 GNAI1P63096 354 aa20.03■□□□□ 0.8
USP42-207ENST00000521713 EIF2S2P20042 333 aaKnown RBP20.03■□□□□ 0.8
USP42-207ENST00000521713 SYTL4Q96C24 671 aaPredicted RBP20.03■□□□□ 0.8
USP42-207ENST00000521713 ANKRD30BQ9BXX2 1392 aa20.03■□□□□ 0.8
USP42-207ENST00000521713 GSE1Q14687 1217 aa20.03■□□□□ 0.8
USP42-207ENST00000521713 DRC7Q8IY82 874 aa20.02■□□□□ 0.8
USP42-207ENST00000521713 ABTB2Q8N961 1025 aa20.02■□□□□ 0.8
USP42-207ENST00000521713 ZNF692Q9BU19 519 aaPredicted RBP20.01■□□□□ 0.79
USP42-207ENST00000521713 URB2Q14146 1524 aaKnown RBP20.01■□□□□ 0.79
USP42-207ENST00000521713 BCL2L13Q9BXK5 485 aa20.01■□□□□ 0.79
USP42-207ENST00000521713 SUPT6HQ7KZ85 1726 aaKnown RBP20.01■□□□□ 0.79
USP42-207ENST00000521713 C9orf78Q9NZ63 289 aaPredicted RBP20.01■□□□□ 0.79
USP42-207ENST00000521713 MSH5O43196 834 aa20■□□□□ 0.79
USP42-207ENST00000521713 SLKQ9H2G2 1235 aaPredicted RBP20■□□□□ 0.79
USP42-207ENST00000521713 TNNT3P45378 269 aaPredicted RBP20■□□□□ 0.79
USP42-207ENST00000521713 CDK13Q14004 1512 aaKnown RBP20■□□□□ 0.79
USP42-207ENST00000521713 ROCK1Q13464 1354 aa20■□□□□ 0.79
USP42-207ENST00000521713 HTATSF1O43719 755 aaKnown RBP19.99■□□□□ 0.79
USP42-207ENST00000521713 CCDC141Q6ZP82 1450 aa19.99■□□□□ 0.79
USP42-207ENST00000521713 NUTM2GQ5VZR2 741 aa19.98■□□□□ 0.79
USP42-207ENST00000521713 DDX11L8A8MPP1 907 aa19.98■□□□□ 0.79
USP42-207ENST00000521713 WASHC2AQ641Q2 1341 aa19.98■□□□□ 0.79
USP42-207ENST00000521713 GZF1Q9H116 711 aaPredicted RBP19.98■□□□□ 0.79
USP42-207ENST00000521713 TSPYL4Q9UJ04 414 aa19.97■□□□□ 0.79
USP42-207ENST00000521713 LRRFIP1Q32MZ4 808 aaKnown RBP19.97■□□□□ 0.79
USP42-207ENST00000521713 PLB1Q6P1J6 1458 aa19.97■□□□□ 0.79
USP42-207ENST00000521713 DDX19BQ9UMR2 479 aa19.97■□□□□ 0.79
USP42-207ENST00000521713 HMOX1P09601 288 aa19.96■□□□□ 0.79
USP42-207ENST00000521713 CNTLNQ9NXG0 1405 aa19.96■□□□□ 0.79
USP42-207ENST00000521713 ARHGEF11O15085 1522 aa19.96■□□□□ 0.79
USP42-207ENST00000521713 SPRYD3Q8NCJ5 442 aa19.96■□□□□ 0.79
USP42-207ENST00000521713 MFAP1P55081 439 aaKnown RBP19.96■□□□□ 0.79
USP42-207ENST00000521713 NBPF1Q3BBV0 1214 aa19.96■□□□□ 0.79
USP42-207ENST00000521713 MTHFSP49914 203 aa19.95■□□□□ 0.78
USP42-207ENST00000521713 FKBP5Q13451 457 aaPredicted RBP19.94■□□□□ 0.78
USP42-207ENST00000521713 CENPQQ7L2Z9 268 aaPredicted RBP19.94■□□□□ 0.78
USP42-207ENST00000521713 GAS2L2Q8NHY3 880 aa19.94■□□□□ 0.78
USP42-207ENST00000521713 SLC26A8Q96RN1 970 aa19.94■□□□□ 0.78
USP42-207ENST00000521713 ERBINQ96RT1 1412 aa19.94■□□□□ 0.78
USP42-207ENST00000521713 CDK19Q9BWU1 502 aa19.94■□□□□ 0.78
USP42-207ENST00000521713 KIF16BQ96L93 1317 aa19.93■□□□□ 0.78
USP42-207ENST00000521713 RRP1P56182 461 aaKnown RBP19.93■□□□□ 0.78
USP42-207ENST00000521713 VSIG10Q8N0Z9 540 aa19.93■□□□□ 0.78
USP42-207ENST00000521713 ADGRL1O94910 1474 aa19.92■□□□□ 0.78
USP42-207ENST00000521713 BRD4O60885 1362 aaPredicted RBP19.92■□□□□ 0.78
USP42-207ENST00000521713 PLEKHO1Q53GL0 409 aaPredicted RBP19.92■□□□□ 0.78
USP42-207ENST00000521713 ZNF608Q9ULD9 1512 aaPredicted RBP19.92■□□□□ 0.78
USP42-207ENST00000521713 DZIP1LQ8IYY4 767 aaKnown RBP19.92■□□□□ 0.78
USP42-207ENST00000521713 ANKRD45Q5TZF3 282 aa19.91■□□□□ 0.78
USP42-207ENST00000521713 HSP90B1P14625 803 aaKnown RBP19.91■□□□□ 0.78
USP42-207ENST00000521713 SKOR2Q2VWA4 1001 aaPredicted RBP19.91■□□□□ 0.78
USP42-207ENST00000521713 TOMM22Q9NS69 142 aa19.91■□□□□ 0.78
USP42-207ENST00000521713 COG6Q9Y2V7 657 aa19.91■□□□□ 0.78
USP42-207ENST00000521713 KIF3AQ9Y496 699 aa19.91■□□□□ 0.78
USP42-207ENST00000521713 RTEL1-TNFRSF6BF6WH68 1400 aa19.9■□□□□ 0.78
USP42-207ENST00000521713 CCDC34Q96HJ3 373 aa19.9■□□□□ 0.78
USP42-207ENST00000521713 PHF14O94880 888 aa19.9■□□□□ 0.78
USP42-207ENST00000521713 CHMP4CQ96CF2 233 aa19.9■□□□□ 0.78
USP42-207ENST00000521713 CSPP1Q1MSJ5 1256 aa19.89■□□□□ 0.77
USP42-207ENST00000521713 CABP1Q9NZU7 370 aa19.89■□□□□ 0.77
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms