RNA–Protein interactions for RNA: ENST00000521340.1

HMGN1P28-201, Transcript of high mobility group nucleosome binding domain 1 pseudogene 28, humanhuman

BASIC

Gene HMGN1P28, Length 364 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1P28-201ENST00000521340 FAM98CQ17RN3 349 aaKnown RBP6.98□□□□□ -1.29
HMGN1P28-201ENST00000521340 WBP1LQ9NX94 342 aa6.98□□□□□ -1.29
HMGN1P28-201ENST00000521340 ITGBL1O95965 494 aaPredicted RBP6.97□□□□□ -1.29
HMGN1P28-201ENST00000521340 GOPCQ9HD26 462 aa6.97□□□□□ -1.29
HMGN1P28-201ENST00000521340 CDCA7LQ96GN5 454 aa6.96□□□□□ -1.3
HMGN1P28-201ENST00000521340 DDRGK1Q96HY6 314 aa6.96□□□□□ -1.3
HMGN1P28-201ENST00000521340 SUPT5HO00267 1087 aaKnown RBP6.95□□□□□ -1.3
HMGN1P28-201ENST00000521340 PRSS12P56730 875 aa6.95□□□□□ -1.3
HMGN1P28-201ENST00000521340 PACS2Q86VP3 889 aa6.95□□□□□ -1.3
HMGN1P28-201ENST00000521340 TTC13Q8NBP0 860 aa6.95□□□□□ -1.3
HMGN1P28-201ENST00000521340 SMAPO00193 183 aa6.94□□□□□ -1.3
HMGN1P28-201ENST00000521340 RGS20O76081 388 aa6.94□□□□□ -1.3
HMGN1P28-201ENST00000521340 GIGYF2Q6Y7W6 1299 aaKnown RBP6.94□□□□□ -1.3
HMGN1P28-201ENST00000521340 ZMYND15Q9H091 742 aa6.94□□□□□ -1.3
HMGN1P28-201ENST00000521340 CDKN2AIPQ9NXV6 580 aaPredicted RBP6.94□□□□□ -1.3
HMGN1P28-201ENST00000521340 NYAP1Q6ZVC0 841 aa6.93□□□□□ -1.3
HMGN1P28-201ENST00000521340 LRCH3Q96II8 777 aa6.93□□□□□ -1.3
HMGN1P28-201ENST00000521340 TSR3Q9UJK0 312 aaKnown RBP6.93□□□□□ -1.3
HMGN1P28-201ENST00000521340 HPS5Q9UPZ3 1129 aa6.93□□□□□ -1.3
HMGN1P28-201ENST00000521340 CERKQ8TCT0 537 aa6.92□□□□□ -1.3
HMGN1P28-201ENST00000521340 TATDN2Q93075 761 aa6.91□□□□□ -1.3
HMGN1P28-201ENST00000521340 SAMD7Q7Z3H4 446 aa6.9□□□□□ -1.3
HMGN1P28-201ENST00000521340 KCNC4Q03721 635 aa6.89□□□□□ -1.31
HMGN1P28-201ENST00000521340 C1orf115Q9H7X2 142 aa6.89□□□□□ -1.31
HMGN1P28-201ENST00000521340 PNMA3Q9UL41 463 aa6.89□□□□□ -1.31
HMGN1P28-201ENST00000521340 PPP4CP60510 307 aa6.88□□□□□ -1.31
HMGN1P28-201ENST00000521340 FAM161AQ3B820 660 aa6.88□□□□□ -1.31
HMGN1P28-201ENST00000521340 NUDT18Q6ZVK8 323 aa6.88□□□□□ -1.31
HMGN1P28-201ENST00000521340 METTL3Q86U44 580 aaKnown RBP6.88□□□□□ -1.31
HMGN1P28-201ENST00000521340 PXYLP1Q8TE99 480 aa6.88□□□□□ -1.31
HMGN1P28-201ENST00000521340 ADGRG1Q9Y653 693 aa6.88□□□□□ -1.31
HMGN1P28-201ENST00000521340 MDM2Q00987 491 aaPredicted RBP6.87□□□□□ -1.31
HMGN1P28-201ENST00000521340 TTLL12Q14166 644 aaPredicted RBP6.87□□□□□ -1.31
HMGN1P28-201ENST00000521340 SH3D19Q5HYK7 790 aa6.87□□□□□ -1.31
HMGN1P28-201ENST00000521340 FAM217BQ9NTX9 383 aaPredicted RBP6.87□□□□□ -1.31
HMGN1P28-201ENST00000521340 NBPF26B4DH59 902 aa6.86□□□□□ -1.31
HMGN1P28-201ENST00000521340 SSTR3P32745 418 aaPredicted RBP6.86□□□□□ -1.31
HMGN1P28-201ENST00000521340 TJAP1Q5JTD0 557 aa6.86□□□□□ -1.31
HMGN1P28-201ENST00000521340 PADI6Q6TGC4 694 aa6.86□□□□□ -1.31
HMGN1P28-201ENST00000521340 GPCPD1Q9NPB8 672 aa6.86□□□□□ -1.31
HMGN1P28-201ENST00000521340 RBM27Q9P2N5 1060 aaKnown RBP6.86□□□□□ -1.31
HMGN1P28-201ENST00000521340 CLCN1P35523 988 aa6.85□□□□□ -1.31
HMGN1P28-201ENST00000521340 FBXO31Q5XUX0 539 aaPredicted RBP6.85□□□□□ -1.31
HMGN1P28-201ENST00000521340 HOMEZQ8IX15 550 aa6.85□□□□□ -1.31
HMGN1P28-201ENST00000521340 NLRP7Q8WX94 980 aa6.85□□□□□ -1.31
HMGN1P28-201ENST00000521340 IRX2Q9BZI1 471 aaPredicted RBP6.85□□□□□ -1.31
HMGN1P28-201ENST00000521340 RSPH6AQ9H0K4 717 aa6.85□□□□□ -1.31
HMGN1P28-201ENST00000521340 SKIV2LQ15477 1246 aaKnown RBP6.84□□□□□ -1.31
HMGN1P28-201ENST00000521340 PROCA1Q8NCQ7 364 aaPredicted RBP6.83□□□□□ -1.32
HMGN1P28-201ENST00000521340 EYA1Q99502 592 aa6.83□□□□□ -1.32
HMGN1P28-201ENST00000521340 GNL3Q9BVP2 549 aaKnown RBP eCLIP6.83□□□□□ -1.32
HMGN1P28-201ENST00000521340 OATP04181 439 aa6.82□□□□□ -1.32
HMGN1P28-201ENST00000521340 APLP1P51693 650 aa6.82□□□□□ -1.32
HMGN1P28-201ENST00000521340 A6NJR5 290 aa6.81□□□□□ -1.32
HMGN1P28-201ENST00000521340 FLIIQ13045 1269 aa6.81□□□□□ -1.32
HMGN1P28-201ENST00000521340 SWT1Q5T5J6 900 aaKnown RBP6.81□□□□□ -1.32
HMGN1P28-201ENST00000521340 ZNF516Q92618 1163 aa6.81□□□□□ -1.32
HMGN1P28-201ENST00000521340 MTRQ99707 1265 aa6.81□□□□□ -1.32
HMGN1P28-201ENST00000521340 BEGAINQ9BUH8 593 aa6.81□□□□□ -1.32
HMGN1P28-201ENST00000521340 RNF40O75150 1001 aa6.79□□□□□ -1.32
HMGN1P28-201ENST00000521340 UBTFP17480 764 aaKnown RBP6.79□□□□□ -1.32
HMGN1P28-201ENST00000521340 HDGFP51858 240 aaKnown RBP6.79□□□□□ -1.32
HMGN1P28-201ENST00000521340 MCM6Q14566 821 aa6.79□□□□□ -1.32
HMGN1P28-201ENST00000521340 MYSM1Q5VVJ2 828 aa6.79□□□□□ -1.32
HMGN1P28-201ENST00000521340 PCMTD1Q96MG8 357 aaPredicted RBP6.79□□□□□ -1.32
HMGN1P28-201ENST00000521340 IL21Q9HBE4 155 aa6.79□□□□□ -1.32
HMGN1P28-201ENST00000521340 FNBP4Q8N3X1 1017 aaPredicted RBP6.78□□□□□ -1.32
HMGN1P28-201ENST00000521340 NKX2-3Q8TAU0 364 aa6.77□□□□□ -1.33
HMGN1P28-201ENST00000521340 CLUAP1Q96AJ1 413 aa6.77□□□□□ -1.33
HMGN1P28-201ENST00000521340 PPP1R18Q6NYC8 613 aa6.76□□□□□ -1.33
HMGN1P28-201ENST00000521340 SLF2Q8IX21 1173 aa6.76□□□□□ -1.33
HMGN1P28-201ENST00000521340 RCCD1A6NED2 376 aa6.75□□□□□ -1.33
HMGN1P28-201ENST00000521340 TRAK2O60296 914 aa6.75□□□□□ -1.33
HMGN1P28-201ENST00000521340 PPP2R2DQ66LE6 453 aa6.75□□□□□ -1.33
HMGN1P28-201ENST00000521340 TBC1D2Q9BYX2 928 aa6.75□□□□□ -1.33
HMGN1P28-201ENST00000521340 POLR3EQ9NVU0 708 aa6.75□□□□□ -1.33
HMGN1P28-201ENST00000521340 LIMD1Q9UGP4 676 aa6.75□□□□□ -1.33
HMGN1P28-201ENST00000521340 CD46P15529 392 aa6.74□□□□□ -1.33
HMGN1P28-201ENST00000521340 COPS2P61201 443 aa6.74□□□□□ -1.33
HMGN1P28-201ENST00000521340 TUSC1Q2TAM9 212 aa6.74□□□□□ -1.33
HMGN1P28-201ENST00000521340 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP6.73□□□□□ -1.33
HMGN1P28-201ENST00000521340 ARID3CA6NKF2 412 aa6.73□□□□□ -1.33
HMGN1P28-201ENST00000521340 SPIRE2Q8WWL2 714 aa6.73□□□□□ -1.33
HMGN1P28-201ENST00000521340 POM121Q96HA1 1249 aa6.73□□□□□ -1.33
HMGN1P28-201ENST00000521340 PRKD2Q9BZL6 878 aa6.73□□□□□ -1.33
HMGN1P28-201ENST00000521340 EIF4ENIF1Q9NRA8 985 aaKnown RBP6.73□□□□□ -1.33
HMGN1P28-201ENST00000521340 SPTLC1O15269 473 aa6.72□□□□□ -1.33
HMGN1P28-201ENST00000521340 RBM46Q8TBY0 533 aaKnown RBP6.72□□□□□ -1.33
HMGN1P28-201ENST00000521340 TMEM134Q9H6X4 195 aa6.72□□□□□ -1.33
HMGN1P28-201ENST00000521340 LCE2BO14633 110 aa6.71□□□□□ -1.34
HMGN1P28-201ENST00000521340 DNAJB2P25686 324 aa6.71□□□□□ -1.34
HMGN1P28-201ENST00000521340 CLK2P49760 499 aaKnown RBP6.71□□□□□ -1.34
HMGN1P28-201ENST00000521340 NECTIN2Q92692 538 aa6.71□□□□□ -1.34
HMGN1P28-201ENST00000521340 SNRKQ9NRH2 765 aa6.71□□□□□ -1.34
HMGN1P28-201ENST00000521340 APBB1O00213 710 aa6.7□□□□□ -1.34
HMGN1P28-201ENST00000521340 ZPR1O75312 459 aa6.7□□□□□ -1.34
HMGN1P28-201ENST00000521340 RFC5P40937 340 aa6.7□□□□□ -1.34
HMGN1P28-201ENST00000521340 Q6ZNB5 142 aa6.7□□□□□ -1.34
HMGN1P28-201ENST00000521340 BANK1Q8NDB2 785 aa6.7□□□□□ -1.34
HMGN1P28-201ENST00000521340 SPDYE5A6NIY4 337 aa6.69□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms