RNA–Protein interactions for RNA: ENST00000517391.5

CPNE3-202, Transcript of copine 3, humanhuman

TSL 3

Gene CPNE3, Length 785 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE3-202ENST00000517391 MAP2K5Q13163 448 aa10.68□□□□□ -0.7
CPNE3-202ENST00000517391 HIC1Q14526 733 aa10.68□□□□□ -0.7
CPNE3-202ENST00000517391 C6orf132Q5T0Z8 1188 aa10.68□□□□□ -0.7
CPNE3-202ENST00000517391 GPBP1L1Q9HC44 474 aaPredicted RBP10.68□□□□□ -0.7
CPNE3-202ENST00000517391 GNPATO15228 680 aa10.67□□□□□ -0.7
CPNE3-202ENST00000517391 FCHSD2O94868 740 aa10.67□□□□□ -0.7
CPNE3-202ENST00000517391 EN1Q05925 392 aaPredicted RBP10.67□□□□□ -0.7
CPNE3-202ENST00000517391 MTRQ99707 1265 aa10.67□□□□□ -0.7
CPNE3-202ENST00000517391 TSR1Q2NL82 804 aaKnown RBP10.66□□□□□ -0.7
CPNE3-202ENST00000517391 IRF6O14896 467 aa10.65□□□□□ -0.7
CPNE3-202ENST00000517391 IL27Q8NEV9 243 aa10.64□□□□□ -0.71
CPNE3-202ENST00000517391 GGCXP38435 758 aa10.62□□□□□ -0.71
CPNE3-202ENST00000517391 PACS2Q86VP3 889 aa10.62□□□□□ -0.71
CPNE3-202ENST00000517391 CCDC102AQ96A19 550 aa10.61□□□□□ -0.71
CPNE3-202ENST00000517391 AMHR2Q16671 573 aa10.6□□□□□ -0.71
CPNE3-202ENST00000517391 CDHR5Q9HBB8 845 aa10.6□□□□□ -0.71
CPNE3-202ENST00000517391 PKDCCQ504Y2 493 aa10.59□□□□□ -0.71
CPNE3-202ENST00000517391 TREML4Q6UXN2 200 aa10.59□□□□□ -0.71
CPNE3-202ENST00000517391 DGAT1O75907 488 aa10.58□□□□□ -0.72
CPNE3-202ENST00000517391 PTGDRQ13258 359 aa10.58□□□□□ -0.72
CPNE3-202ENST00000517391 ZNF516Q92618 1163 aa10.58□□□□□ -0.72
CPNE3-202ENST00000517391 MYT1Q01538 1121 aa10.57□□□□□ -0.72
CPNE3-202ENST00000517391 DDRGK1Q96HY6 314 aa10.57□□□□□ -0.72
CPNE3-202ENST00000517391 SAMD7Q7Z3H4 446 aa10.56□□□□□ -0.72
CPNE3-202ENST00000517391 TMUB1Q9BVT8 246 aa10.56□□□□□ -0.72
CPNE3-202ENST00000517391 POTECB2RU33 542 aa10.54□□□□□ -0.72
CPNE3-202ENST00000517391 FECHP22830 423 aa10.54□□□□□ -0.72
CPNE3-202ENST00000517391 FAM117AQ9C073 453 aa10.54□□□□□ -0.72
CPNE3-202ENST00000517391 LCE2AQ5TA79 106 aaPredicted RBP10.53□□□□□ -0.72
CPNE3-202ENST00000517391 NPDC1Q9NQX5 325 aaPredicted RBP10.53□□□□□ -0.72
CPNE3-202ENST00000517391 TSKSQ9UJT2 592 aa10.53□□□□□ -0.72
CPNE3-202ENST00000517391 TRIM67Q6ZTA4 783 aa10.52□□□□□ -0.73
CPNE3-202ENST00000517391 PARP9Q8IXQ6 854 aa10.52□□□□□ -0.73
CPNE3-202ENST00000517391 PRSS12P56730 875 aa10.51□□□□□ -0.73
CPNE3-202ENST00000517391 NKX2-3Q8TAU0 364 aa10.51□□□□□ -0.73
CPNE3-202ENST00000517391 CERKQ8TCT0 537 aa10.51□□□□□ -0.73
CPNE3-202ENST00000517391 CDCA7LQ96GN5 454 aa10.51□□□□□ -0.73
CPNE3-202ENST00000517391 ARXQ96QS3 562 aa10.5□□□□□ -0.73
CPNE3-202ENST00000517391 TTLL12Q14166 644 aaPredicted RBP10.49□□□□□ -0.73
CPNE3-202ENST00000517391 STK17AQ9UEE5 414 aa10.48□□□□□ -0.73
CPNE3-202ENST00000517391 FAM198AQ9UFP1 575 aa10.48□□□□□ -0.73
CPNE3-202ENST00000517391 SLC19A1P41440 591 aa10.47□□□□□ -0.73
CPNE3-202ENST00000517391 PRR20EP86478 221 aa10.47□□□□□ -0.73
CPNE3-202ENST00000517391 PRR20CP86479 221 aa10.47□□□□□ -0.73
CPNE3-202ENST00000517391 PRR20DP86480 221 aa10.47□□□□□ -0.73
CPNE3-202ENST00000517391 PRR20BP86481 221 aa10.47□□□□□ -0.73
CPNE3-202ENST00000517391 PRR20AP86496 221 aa10.47□□□□□ -0.73
CPNE3-202ENST00000517391 PLEKHG3A1L390 1219 aa10.46□□□□□ -0.73
CPNE3-202ENST00000517391 APLP1P51693 650 aa10.46□□□□□ -0.73
CPNE3-202ENST00000517391 HDGFP51858 240 aaKnown RBP10.46□□□□□ -0.73
CPNE3-202ENST00000517391 PADI6Q6TGC4 694 aa10.46□□□□□ -0.73
CPNE3-202ENST00000517391 NECTIN2Q92692 538 aa10.46□□□□□ -0.73
CPNE3-202ENST00000517391 GOPCQ9HD26 462 aa10.46□□□□□ -0.73
CPNE3-202ENST00000517391 SMAPO00193 183 aa10.45□□□□□ -0.74
CPNE3-202ENST00000517391 C3orf80F5H4A9 247 aa10.43□□□□□ -0.74
CPNE3-202ENST00000517391 CLCN1P35523 988 aa10.43□□□□□ -0.74
CPNE3-202ENST00000517391 GIGYF2Q6Y7W6 1299 aaKnown RBP10.43□□□□□ -0.74
CPNE3-202ENST00000517391 RNF40O75150 1001 aa10.42□□□□□ -0.74
CPNE3-202ENST00000517391 ZNF598Q86UK7 904 aaKnown RBP10.42□□□□□ -0.74
CPNE3-202ENST00000517391 TTC13Q8NBP0 860 aa10.42□□□□□ -0.74
CPNE3-202ENST00000517391 RBM27Q9P2N5 1060 aaKnown RBP10.42□□□□□ -0.74
CPNE3-202ENST00000517391 NISCHQ9Y2I1 1504 aa10.42□□□□□ -0.74
CPNE3-202ENST00000517391 NBPF26B4DH59 902 aa10.41□□□□□ -0.74
CPNE3-202ENST00000517391 SPRYD7Q5W111 196 aa10.41□□□□□ -0.74
CPNE3-202ENST00000517391 TATDN2Q93075 761 aa10.41□□□□□ -0.74
CPNE3-202ENST00000517391 PNMA3Q9UL41 463 aa10.41□□□□□ -0.74
CPNE3-202ENST00000517391 FAM187AA6NFU0 413 aa10.4□□□□□ -0.74
CPNE3-202ENST00000517391 OATP04181 439 aa10.4□□□□□ -0.74
CPNE3-202ENST00000517391 COPS2P61201 443 aa10.4□□□□□ -0.74
CPNE3-202ENST00000517391 NUDT18Q6ZVK8 323 aa10.4□□□□□ -0.74
CPNE3-202ENST00000517391 ZMYND15Q9H091 742 aa10.4□□□□□ -0.74
CPNE3-202ENST00000517391 GPCPD1Q9NPB8 672 aa10.4□□□□□ -0.74
CPNE3-202ENST00000517391 ZPR1O75312 459 aa10.39□□□□□ -0.75
CPNE3-202ENST00000517391 WFS1O76024 890 aa10.39□□□□□ -0.75
CPNE3-202ENST00000517391 INSM1Q01101 510 aaPredicted RBP10.38□□□□□ -0.75
CPNE3-202ENST00000517391 RNF223E7ERA6 249 aa10.37□□□□□ -0.75
CPNE3-202ENST00000517391 MS4A1P11836 297 aa10.37□□□□□ -0.75
CPNE3-202ENST00000517391 FAM161AQ3B820 660 aa10.37□□□□□ -0.75
CPNE3-202ENST00000517391 REPIN1Q9BWE0 567 aaKnown RBP10.37□□□□□ -0.75
CPNE3-202ENST00000517391 SUPT5HO00267 1087 aaKnown RBP10.36□□□□□ -0.75
CPNE3-202ENST00000517391 MDM2Q00987 491 aaPredicted RBP10.36□□□□□ -0.75
CPNE3-202ENST00000517391 FLIIQ13045 1269 aa10.36□□□□□ -0.75
CPNE3-202ENST00000517391 PCMTD1Q96MG8 357 aaPredicted RBP10.36□□□□□ -0.75
CPNE3-202ENST00000517391 RSPH6AQ9H0K4 717 aa10.36□□□□□ -0.75
CPNE3-202ENST00000517391 AAASQ9NRG9 546 aa10.36□□□□□ -0.75
CPNE3-202ENST00000517391 EMID1Q96A84 441 aaPredicted RBP10.35□□□□□ -0.75
CPNE3-202ENST00000517391 SSTR3P32745 418 aaPredicted RBP10.34□□□□□ -0.75
CPNE3-202ENST00000517391 ZNF697Q5TEC3 545 aa10.34□□□□□ -0.75
CPNE3-202ENST00000517391 ADGRG1Q9Y653 693 aa10.34□□□□□ -0.75
CPNE3-202ENST00000517391 LOC100996750A0A140TA64 210 aa10.33□□□□□ -0.76
CPNE3-202ENST00000517391 ST8SIA5O15466 376 aa10.33□□□□□ -0.76
CPNE3-202ENST00000517391 WIPF1O43516 503 aa10.33□□□□□ -0.76
CPNE3-202ENST00000517391 SH3D19Q5HYK7 790 aa10.33□□□□□ -0.76
CPNE3-202ENST00000517391 METTL3Q86U44 580 aaKnown RBP10.33□□□□□ -0.76
CPNE3-202ENST00000517391 HOMEZQ8IX15 550 aa10.33□□□□□ -0.76
CPNE3-202ENST00000517391 PHOX2BQ99453 314 aa10.33□□□□□ -0.76
CPNE3-202ENST00000517391 KRTAP4-6Q9BYQ5 205 aa10.33□□□□□ -0.76
CPNE3-202ENST00000517391 GDF9O60383 454 aa10.32□□□□□ -0.76
CPNE3-202ENST00000517391 SLF2Q8IX21 1173 aa10.32□□□□□ -0.76
CPNE3-202ENST00000517391 ANKLE1Q8NAG6 615 aa10.32□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms