RNA–Protein interactions for RNA: ENST00000515847.1

LIMCH1-222, Transcript of LIM and calponin homology domains 1, human

TSL 4

Gene LIMCH1, Length 490 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LIMCH1-222	ENST00000515847	UBR1	Q8IWV7	1749 aa		11.45	□□□□□ -0.58
LIMCH1-222	ENST00000515847	SPHKAP	Q2M3C7	1700 aa		11.44	□□□□□ -0.58
LIMCH1-222	ENST00000515847	PLA2R1	Q13018	1463 aa		11.44	□□□□□ -0.58
LIMCH1-222	ENST00000515847	ADGRB3	O60242	1522 aa		11.42	□□□□□ -0.58
LIMCH1-222	ENST00000515847	KDM5A	P29375	1690 aa	Known RBP	11.42	□□□□□ -0.58
LIMCH1-222	ENST00000515847	POLR1A	O95602	1720 aa	Predicted RBP	11.41	□□□□□ -0.58
LIMCH1-222	ENST00000515847	PKD2	Q13563	968 aa		11.41	□□□□□ -0.58
LIMCH1-222	ENST00000515847	IDI1	Q13907	227 aa		11.41	□□□□□ -0.58
LIMCH1-222	ENST00000515847	ZBTB12	Q9Y330	459 aa	Predicted RBP	11.41	□□□□□ -0.58
LIMCH1-222	ENST00000515847	PTPRT	O14522	1441 aa		11.41	□□□□□ -0.58
LIMCH1-222	ENST00000515847	TRPM2	O94759	1503 aa		11.4	□□□□□ -0.58
LIMCH1-222	ENST00000515847	SLC52A1	Q9NWF4	448 aa		11.4	□□□□□ -0.58
LIMCH1-222	ENST00000515847	NEURL4	Q96JN8	1562 aa		11.4	□□□□□ -0.58
LIMCH1-222	ENST00000515847	MYO5B	Q9ULV0	1848 aa		11.39	□□□□□ -0.59
LIMCH1-222	ENST00000515847	NCKAP5L	Q9HCH0	1330 aa		11.39	□□□□□ -0.59
LIMCH1-222	ENST00000515847	CLTCL1	P53675	1640 aa		11.39	□□□□□ -0.59
LIMCH1-222	ENST00000515847	ATXN8OS	P0DMR3	200 aa		11.39	□□□□□ -0.59
LIMCH1-222	ENST00000515847	THEMIS	Q8N1K5	641 aa	Predicted RBP	11.39	□□□□□ -0.59
LIMCH1-222	ENST00000515847	SLIT1	O75093	1534 aa		11.39	□□□□□ -0.59
LIMCH1-222	ENST00000515847	TMEM131L	A2VDJ0	1609 aa		11.38	□□□□□ -0.59
LIMCH1-222	ENST00000515847	ARHGAP23	Q9P227	1491 aa		11.38	□□□□□ -0.59
LIMCH1-222	ENST00000515847	MPHOSPH9	Q99550	1183 aa		11.38	□□□□□ -0.59
LIMCH1-222	ENST00000515847	STAG3	Q9UJ98	1225 aa		11.38	□□□□□ -0.59
LIMCH1-222	ENST00000515847	TMEM2	Q9UHN6	1383 aa		11.36	□□□□□ -0.59
LIMCH1-222	ENST00000515847	SCAF11	Q99590	1463 aa	Known RBP	11.36	□□□□□ -0.59
LIMCH1-222	ENST00000515847	CHGA	P10645	457 aa	Known RBP	11.35	□□□□□ -0.59
LIMCH1-222	ENST00000515847	ANKLE2	Q86XL3	938 aa		11.35	□□□□□ -0.59
LIMCH1-222	ENST00000515847	IQGAP1	P46940	1657 aa		11.35	□□□□□ -0.59
LIMCH1-222	ENST00000515847	CCDC144A	A2RUR9	1427 aa		11.35	□□□□□ -0.59
LIMCH1-222	ENST00000515847	MED14	O60244	1454 aa		11.34	□□□□□ -0.59
LIMCH1-222	ENST00000515847	KIF1B	O60333	1816 aa		11.34	□□□□□ -0.59
LIMCH1-222	ENST00000515847	NPHP4	O75161	1426 aa	Predicted RBP	11.34	□□□□□ -0.59
LIMCH1-222	ENST00000515847	ZFYVE9	O95405	1425 aa		11.34	□□□□□ -0.59
LIMCH1-222	ENST00000515847	LTK	P29376	864 aa		11.33	□□□□□ -0.6
LIMCH1-222	ENST00000515847	HDGF	P51858	240 aa	Known RBP	11.33	□□□□□ -0.6
LIMCH1-222	ENST00000515847	RIMS2	Q9UQ26	1411 aa		11.33	□□□□□ -0.6
LIMCH1-222	ENST00000515847	TXNDC2	Q86VQ3	553 aa		11.31	□□□□□ -0.6
LIMCH1-222	ENST00000515847	EID1	Q9Y6B2	187 aa		11.31	□□□□□ -0.6
LIMCH1-222	ENST00000515847	PCGF6	Q9BYE7	350 aa		11.3	□□□□□ -0.6
LIMCH1-222	ENST00000515847	ZNF326	Q5BKZ1	582 aa	Known RBP	11.29	□□□□□ -0.6
LIMCH1-222	ENST00000515847	ABCF1	Q8NE71	845 aa	Known RBP eCLIP	11.29	□□□□□ -0.6
LIMCH1-222	ENST00000515847	NEXMIF	Q5QGS0	1516 aa		11.29	□□□□□ -0.6
LIMCH1-222	ENST00000515847	ANKRD30B	Q9BXX2	1392 aa		11.28	□□□□□ -0.6
LIMCH1-222	ENST00000515847	PPP1R15A	O75807	674 aa	Predicted RBP	11.28	□□□□□ -0.6
LIMCH1-222	ENST00000515847	LTBP4	Q8N2S1	1624 aa		11.27	□□□□□ -0.6
LIMCH1-222	ENST00000515847	NUTM2D	Q5VT03	806 aa	Predicted RBP	11.27	□□□□□ -0.61
LIMCH1-222	ENST00000515847	CHRDL2	Q6WN34	429 aa		11.27	□□□□□ -0.61
LIMCH1-222	ENST00000515847	ZNF335	Q9H4Z2	1342 aa	Predicted RBP	11.27	□□□□□ -0.61
LIMCH1-222	ENST00000515847	PLEKHG1	Q9ULL1	1385 aa		11.27	□□□□□ -0.61
LIMCH1-222	ENST00000515847	SPATA31E1	Q6ZUB1	1445 aa		11.26	□□□□□ -0.61
LIMCH1-222	ENST00000515847	PPL	O60437	1756 aa		11.26	□□□□□ -0.61
LIMCH1-222	ENST00000515847	AKT1S1	Q96B36	256 aa		11.26	□□□□□ -0.61
LIMCH1-222	ENST00000515847	CLSPN	Q9HAW4	1339 aa		11.26	□□□□□ -0.61
LIMCH1-222	ENST00000515847	RPGRIP1L	Q68CZ1	1315 aa		11.25	□□□□□ -0.61
LIMCH1-222	ENST00000515847	NRXN3	Q9Y4C0	1643 aa		11.24	□□□□□ -0.61
LIMCH1-222	ENST00000515847	IFT172	Q9UG01	1749 aa		11.24	□□□□□ -0.61
LIMCH1-222	ENST00000515847	STRCP1	A6NGW2	1772 aa		11.24	□□□□□ -0.61
LIMCH1-222	ENST00000515847	STAC3	Q96MF2	364 aa		11.24	□□□□□ -0.61
LIMCH1-222	ENST00000515847	SLC26A8	Q96RN1	970 aa		11.24	□□□□□ -0.61
LIMCH1-222	ENST00000515847	SETBP1	Q9Y6X0	1596 aa		11.24	□□□□□ -0.61
LIMCH1-222	ENST00000515847	BCAN	Q96GW7	911 aa		11.23	□□□□□ -0.61
LIMCH1-222	ENST00000515847	DHX57	Q6P158	1386 aa	Known RBP	11.23	□□□□□ -0.61
LIMCH1-222	ENST00000515847	ADAMTS13	Q76LX8	1427 aa		11.23	□□□□□ -0.61
LIMCH1-222	ENST00000515847	DIP2A	Q14689	1571 aa		11.23	□□□□□ -0.61
LIMCH1-222	ENST00000515847	RGL3	Q3MIN7	710 aa		11.22	□□□□□ -0.61
LIMCH1-222	ENST00000515847	CPS1	P31327	1500 aa		11.21	□□□□□ -0.61
LIMCH1-222	ENST00000515847	NWD1	Q149M9	1564 aa		11.2	□□□□□ -0.62
LIMCH1-222	ENST00000515847	VGF	O15240	615 aa	Predicted RBP	11.2	□□□□□ -0.62
LIMCH1-222	ENST00000515847	CERK	Q8TCT0	537 aa		11.2	□□□□□ -0.62
LIMCH1-222	ENST00000515847	SETD1A	O15047	1707 aa	Known RBP	11.19	□□□□□ -0.62
LIMCH1-222	ENST00000515847	CHD2	O14647	1828 aa	Known RBP	11.19	□□□□□ -0.62
LIMCH1-222	ENST00000515847	TBX22	Q9Y458	520 aa		11.18	□□□□□ -0.62
LIMCH1-222	ENST00000515847	LRRC7	Q96NW7	1537 aa		11.18	□□□□□ -0.62
LIMCH1-222	ENST00000515847	MYOM2	P54296	1465 aa		11.18	□□□□□ -0.62
LIMCH1-222	ENST00000515847	ALK	Q9UM73	1620 aa		11.17	□□□□□ -0.62
LIMCH1-222	ENST00000515847	ADGRF5	Q8IZF2	1346 aa		11.17	□□□□□ -0.62
LIMCH1-222	ENST00000515847	NKTR	P30414	1462 aa	Known RBP	11.17	□□□□□ -0.62
LIMCH1-222	ENST00000515847	IQSEC2	Q5JU85	1478 aa		11.17	□□□□□ -0.62
LIMCH1-222	ENST00000515847	PIK3C2G	O75747	1445 aa		11.17	□□□□□ -0.62
LIMCH1-222	ENST00000515847	PTPRU	Q92729	1446 aa		11.17	□□□□□ -0.62
LIMCH1-222	ENST00000515847	MET	P08581	1390 aa		11.16	□□□□□ -0.62
LIMCH1-222	ENST00000515847	TONSL	Q96HA7	1378 aa		11.16	□□□□□ -0.62
LIMCH1-222	ENST00000515847	XRN1	Q8IZH2	1706 aa	Known RBP	11.16	□□□□□ -0.62
LIMCH1-222	ENST00000515847	KCNA6	P17658	529 aa		11.16	□□□□□ -0.62
LIMCH1-222	ENST00000515847	REM2	Q8IYK8	340 aa	Predicted RBP	11.16	□□□□□ -0.62
LIMCH1-222	ENST00000515847	CCER1	Q8TC90	406 aa	Predicted RBP	11.16	□□□□□ -0.62
LIMCH1-222	ENST00000515847	NRXN1	Q9ULB1	1477 aa		11.16	□□□□□ -0.62
LIMCH1-222	ENST00000515847	XIRP1	Q702N8	1843 aa	Known RBP	11.16	□□□□□ -0.62
LIMCH1-222	ENST00000515847	PIK3R4	Q99570	1358 aa		11.16	□□□□□ -0.62
LIMCH1-222	ENST00000515847	SIN3A	Q96ST3	1273 aa		11.14	□□□□□ -0.63
LIMCH1-222	ENST00000515847	ASXL1	Q8IXJ9	1541 aa		11.14	□□□□□ -0.63
LIMCH1-222	ENST00000515847	DCAF11	Q8TEB1	546 aa		11.13	□□□□□ -0.63
LIMCH1-222	ENST00000515847	TIMELESS	Q9UNS1	1208 aa		11.13	□□□□□ -0.63
LIMCH1-222	ENST00000515847	TMEM94	Q12767	1356 aa		11.13	□□□□□ -0.63
LIMCH1-222	ENST00000515847	LAMC1	P11047	1609 aa		11.13	□□□□□ -0.63
LIMCH1-222	ENST00000515847	NEUROD1	Q13562	356 aa		11.12	□□□□□ -0.63
LIMCH1-222	ENST00000515847	AMOTL2	Q9Y2J4	779 aa		11.12	□□□□□ -0.63
LIMCH1-222	ENST00000515847	KDM2A	Q9Y2K7	1162 aa		11.12	□□□□□ -0.63
LIMCH1-222	ENST00000515847	PROSER2	Q86WR7	435 aa	Predicted RBP	11.11	□□□□□ -0.63
LIMCH1-222	ENST00000515847	RBM33	Q96EV2	1170 aa	Known RBP	11.11	□□□□□ -0.63

Retrieved 100 of 20,778 RNA–protein pairs in 10.7 ms