RNA–Protein interactions for RNA: ENST00000515351.1

PCDH1-208, Transcript of protocadherin 1, humanhuman

TSL 2

Gene PCDH1, Length 2,489 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1-208ENST00000515351 MAP3K4Q9Y6R4 1608 aa20.04■□□□□ 0.8
PCDH1-208ENST00000515351 CDCA8Q53HL2 280 aa20.02■□□□□ 0.8
PCDH1-208ENST00000515351 KDM5AP29375 1690 aaKnown RBP20.02■□□□□ 0.8
PCDH1-208ENST00000515351 PPRC1Q5VV67 1664 aaKnown RBP20.02■□□□□ 0.8
PCDH1-208ENST00000515351 ABCA6Q8N139 1617 aa20.02■□□□□ 0.8
PCDH1-208ENST00000515351 MYT1LQ9UL68 1186 aa20.02■□□□□ 0.8
PCDH1-208ENST00000515351 SALL2Q9Y467 1007 aaPredicted RBP20.02■□□□□ 0.8
PCDH1-208ENST00000515351 UGGT1Q9NYU2 1555 aa20.02■□□□□ 0.79
PCDH1-208ENST00000515351 MYOM2P54296 1465 aa20.02■□□□□ 0.79
PCDH1-208ENST00000515351 RRP1P56182 461 aaKnown RBP20.01■□□□□ 0.79
PCDH1-208ENST00000515351 EIF3AQ14152 1382 aaKnown RBP20.01■□□□□ 0.79
PCDH1-208ENST00000515351 RCAN3Q9UKA8 241 aa20.01■□□□□ 0.79
PCDH1-208ENST00000515351 MROH2AA6NES4 1674 aa20■□□□□ 0.79
PCDH1-208ENST00000515351 KNSTRNQ9Y448 316 aa19.99■□□□□ 0.79
PCDH1-208ENST00000515351 ZNF518AQ6AHZ1 1483 aa19.99■□□□□ 0.79
PCDH1-208ENST00000515351 LMTK2Q8IWU2 1503 aa19.98■□□□□ 0.79
PCDH1-208ENST00000515351 ASXL1Q8IXJ9 1541 aa19.98■□□□□ 0.79
PCDH1-208ENST00000515351 AMER1Q5JTC6 1135 aaPredicted RBP19.97■□□□□ 0.79
PCDH1-208ENST00000515351 CFAP74Q9C0B2 1584 aa19.97■□□□□ 0.79
PCDH1-208ENST00000515351 CDCA7LQ96GN5 454 aa19.96■□□□□ 0.79
PCDH1-208ENST00000515351 PPP2R1AP30153 589 aa19.95■□□□□ 0.78
PCDH1-208ENST00000515351 MYO3AQ8NEV4 1616 aa19.93■□□□□ 0.78
PCDH1-208ENST00000515351 NPC1L1Q9UHC9 1359 aa19.93■□□□□ 0.78
PCDH1-208ENST00000515351 NRXN1Q9ULB1 1477 aa19.93■□□□□ 0.78
PCDH1-208ENST00000515351 ADAMTS8Q9UP79 889 aa19.92■□□□□ 0.78
PCDH1-208ENST00000515351 ADGRF5Q8IZF2 1346 aa19.91■□□□□ 0.78
PCDH1-208ENST00000515351 CFAP65Q6ZU64 1925 aaKnown RBP19.91■□□□□ 0.78
PCDH1-208ENST00000515351 PIK3C2GO75747 1445 aa19.91■□□□□ 0.78
PCDH1-208ENST00000515351 ADGRB3O60242 1522 aa19.91■□□□□ 0.78
PCDH1-208ENST00000515351 CFAP70Q5T0N1 1121 aa19.91■□□□□ 0.78
PCDH1-208ENST00000515351 EXOC6Q8TAG9 804 aa19.91■□□□□ 0.78
PCDH1-208ENST00000515351 ERVK-7P63135 1459 aa19.91■□□□□ 0.78
PCDH1-208ENST00000515351 SLC24A1O60721 1099 aa19.91■□□□□ 0.78
PCDH1-208ENST00000515351 PPLO60437 1756 aa19.9■□□□□ 0.78
PCDH1-208ENST00000515351 FRMPD1Q5SYB0 1578 aa19.9■□□□□ 0.78
PCDH1-208ENST00000515351 POGZQ7Z3K3 1410 aa19.89■□□□□ 0.78
PCDH1-208ENST00000515351 HECW2Q9P2P5 1572 aa19.89■□□□□ 0.77
PCDH1-208ENST00000515351 SETBP1Q9Y6X0 1596 aa19.88■□□□□ 0.77
PCDH1-208ENST00000515351 MLH3Q9UHC1 1453 aa19.87■□□□□ 0.77
PCDH1-208ENST00000515351 CD109Q6YHK3 1445 aa19.87■□□□□ 0.77
PCDH1-208ENST00000515351 NPM1P06748 294 aaKnown RBP eCLIP19.87■□□□□ 0.77
PCDH1-208ENST00000515351 WDR43Q15061 677 aaKnown RBP eCLIP19.87■□□□□ 0.77
PCDH1-208ENST00000515351 SBNO2Q9Y2G9 1366 aa19.85■□□□□ 0.77
PCDH1-208ENST00000515351 ZC3H13Q5T200 1668 aaKnown RBP19.85■□□□□ 0.77
PCDH1-208ENST00000515351 ERICH6Q7L0X2 663 aa19.84■□□□□ 0.77
PCDH1-208ENST00000515351 NOS1P29475 1434 aa19.84■□□□□ 0.77
PCDH1-208ENST00000515351 NPATQ14207 1427 aa19.84■□□□□ 0.77
PCDH1-208ENST00000515351 PLEKHH1Q9ULM0 1364 aa19.83■□□□□ 0.77
PCDH1-208ENST00000515351 OSCARQ8IYS5 282 aa19.81■□□□□ 0.76
PCDH1-208ENST00000515351 QRICH2Q9H0J4 1663 aa19.81■□□□□ 0.76
PCDH1-208ENST00000515351 ZNF521Q96K83 1311 aa19.81■□□□□ 0.76
PCDH1-208ENST00000515351 CAMSAP1Q5T5Y3 1602 aa19.8■□□□□ 0.76
PCDH1-208ENST00000515351 ABCC3O15438 1527 aa19.8■□□□□ 0.76
PCDH1-208ENST00000515351 PLIN1O60240 522 aa19.79■□□□□ 0.76
PCDH1-208ENST00000515351 SIGLEC1Q9BZZ2 1709 aa19.78■□□□□ 0.76
PCDH1-208ENST00000515351 ADGRB1O14514 1584 aa19.78■□□□□ 0.76
PCDH1-208ENST00000515351 CARD14Q9BXL6 1004 aa19.78■□□□□ 0.76
PCDH1-208ENST00000515351 CENPJQ9HC77 1338 aaPredicted RBP19.77■□□□□ 0.76
PCDH1-208ENST00000515351 CHGAP10645 457 aaKnown RBP19.77■□□□□ 0.75
PCDH1-208ENST00000515351 DUSP27Q5VZP5 1158 aa19.77■□□□□ 0.75
PCDH1-208ENST00000515351 GGT6Q6P531 493 aa19.77■□□□□ 0.75
PCDH1-208ENST00000515351 PIK3C2BO00750 1634 aa19.76■□□□□ 0.75
PCDH1-208ENST00000515351 TCERG1O14776 1098 aaKnown RBP19.75■□□□□ 0.75
PCDH1-208ENST00000515351 GOLGA2Q08379 1002 aa19.75■□□□□ 0.75
PCDH1-208ENST00000515351 NEO1Q92859 1461 aa19.75■□□□□ 0.75
PCDH1-208ENST00000515351 CRBNQ96SW2 442 aa19.75■□□□□ 0.75
PCDH1-208ENST00000515351 C14orf93Q9H972 538 aaKnown RBP19.75■□□□□ 0.75
PCDH1-208ENST00000515351 RPGRIP1LQ68CZ1 1315 aa19.73■□□□□ 0.75
PCDH1-208ENST00000515351 DIP2CQ9Y2E4 1556 aa19.72■□□□□ 0.75
PCDH1-208ENST00000515351 ANP32AP39687 249 aaKnown RBP19.72■□□□□ 0.75
PCDH1-208ENST00000515351 NOP58Q9Y2X3 529 aaKnown RBP19.71■□□□□ 0.75
PCDH1-208ENST00000515351 CCDC146Q8IYE0 955 aa19.71■□□□□ 0.75
PCDH1-208ENST00000515351 TRAK1Q9UPV9 953 aa19.71■□□□□ 0.75
PCDH1-208ENST00000515351 RICTORQ6R327 1708 aa19.71■□□□□ 0.75
PCDH1-208ENST00000515351 GLI2P10070 1586 aa19.7■□□□□ 0.74
PCDH1-208ENST00000515351 SLFN5Q08AF3 891 aa19.7■□□□□ 0.74
PCDH1-208ENST00000515351 USP32Q8NFA0 1604 aa19.7■□□□□ 0.74
PCDH1-208ENST00000515351 ARHGEF28Q8N1W1 1705 aaKnown RBP19.7■□□□□ 0.74
PCDH1-208ENST00000515351 C20orf194Q5TEA3 1177 aa19.69■□□□□ 0.74
PCDH1-208ENST00000515351 TRMT2AQ8IZ69 625 aaKnown RBP19.69■□□□□ 0.74
PCDH1-208ENST00000515351 SHPRHQ149N8 1683 aa19.69■□□□□ 0.74
PCDH1-208ENST00000515351 POLR3AO14802 1390 aaPredicted RBP19.69■□□□□ 0.74
PCDH1-208ENST00000515351 MS4A1P11836 297 aa19.68■□□□□ 0.74
PCDH1-208ENST00000515351 NEXMIFQ5QGS0 1516 aa19.68■□□□□ 0.74
PCDH1-208ENST00000515351 NSD3Q9BZ95 1437 aa19.68■□□□□ 0.74
PCDH1-208ENST00000515351 APAF1O14727 1248 aa19.68■□□□□ 0.74
PCDH1-208ENST00000515351 IPO9Q96P70 1041 aaKnown RBP19.68■□□□□ 0.74
PCDH1-208ENST00000515351 RAPGEF3O95398 923 aa19.67■□□□□ 0.74
PCDH1-208ENST00000515351 TMEM132EQ6IEE7 984 aa19.66■□□□□ 0.74
PCDH1-208ENST00000515351 NKTRP30414 1462 aaKnown RBP19.66■□□□□ 0.74
PCDH1-208ENST00000515351 NGEFQ8N5V2 710 aa19.65■□□□□ 0.74
PCDH1-208ENST00000515351 ARHGAP31Q2M1Z3 1444 aa19.64■□□□□ 0.74
PCDH1-208ENST00000515351 PAK3O75914 559 aaPredicted RBP19.64■□□□□ 0.74
PCDH1-208ENST00000515351 GOLGA6L2Q8N9W4 650 aaPredicted RBP19.64■□□□□ 0.74
PCDH1-208ENST00000515351 MYO5BQ9ULV0 1848 aa19.64■□□□□ 0.73
PCDH1-208ENST00000515351 PDE4AP27815 886 aa19.64■□□□□ 0.73
PCDH1-208ENST00000515351 SLC12A5Q9H2X9 1139 aa19.64■□□□□ 0.73
PCDH1-208ENST00000515351 BACH2Q9BYV9 841 aa19.63■□□□□ 0.73
PCDH1-208ENST00000515351 SPINK5Q9NQ38 1064 aaPredicted RBP19.63■□□□□ 0.73
PCDH1-208ENST00000515351 VGFO15240 615 aaPredicted RBP19.62■□□□□ 0.73
Retrieved 100 of 20,778 RNA–protein pairs in 58.2 ms