RNA–Protein interactions for RNA: ENST00000514307.5

NUP54-214, Transcript of nucleoporin 54, humanhuman

TSL 4

Gene NUP54, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-214ENST00000514307 C14orf93Q9H972 538 aaKnown RBP22.33■■□□□ 1.17
NUP54-214ENST00000514307 SPATA31D1Q6ZQQ2 1576 aa22.33■■□□□ 1.16
NUP54-214ENST00000514307 PREX1Q8TCU6 1659 aa22.33■■□□□ 1.16
NUP54-214ENST00000514307 ZFYVE9O95405 1425 aa22.31■■□□□ 1.16
NUP54-214ENST00000514307 PIK3C2BO00750 1634 aa22.31■■□□□ 1.16
NUP54-214ENST00000514307 DDX10Q13206 875 aaKnown RBP22.31■■□□□ 1.16
NUP54-214ENST00000514307 CFAP65Q6ZU64 1925 aaKnown RBP22.3■■□□□ 1.16
NUP54-214ENST00000514307 ST20-MTHFSA0A0A6YYL1 179 aa22.3■■□□□ 1.16
NUP54-214ENST00000514307 CEBPAP49715 358 aaPredicted RBP22.3■■□□□ 1.16
NUP54-214ENST00000514307 CFAP70Q5T0N1 1121 aa22.3■■□□□ 1.16
NUP54-214ENST00000514307 PTPRMP28827 1452 aa22.27■■□□□ 1.16
NUP54-214ENST00000514307 NRXN1Q9ULB1 1477 aa22.25■■□□□ 1.15
NUP54-214ENST00000514307 MROH2AA6NES4 1674 aa22.25■■□□□ 1.15
NUP54-214ENST00000514307 PLPPR3Q6T4P5 718 aa22.24■■□□□ 1.15
NUP54-214ENST00000514307 NUTM2DQ5VT03 806 aaPredicted RBP22.23■■□□□ 1.15
NUP54-214ENST00000514307 THEMISQ8N1K5 641 aaPredicted RBP22.23■■□□□ 1.15
NUP54-214ENST00000514307 WASHC2AQ641Q2 1341 aa22.23■■□□□ 1.15
NUP54-214ENST00000514307 TRPM1Q7Z4N2 1603 aa22.23■■□□□ 1.15
NUP54-214ENST00000514307 NLRP1Q9C000 1473 aa22.22■■□□□ 1.15
NUP54-214ENST00000514307 EIF3AQ14152 1382 aaKnown RBP22.22■■□□□ 1.15
NUP54-214ENST00000514307 A2ML1A8K2U0 1454 aa22.22■■□□□ 1.15
NUP54-214ENST00000514307 TMEM131LA2VDJ0 1609 aa22.21■■□□□ 1.15
NUP54-214ENST00000514307 CCDC7Q96M83 1385 aa22.21■■□□□ 1.15
NUP54-214ENST00000514307 TMF1P82094 1093 aa22.2■■□□□ 1.14
NUP54-214ENST00000514307 CDCA8Q53HL2 280 aa22.2■■□□□ 1.14
NUP54-214ENST00000514307 SCAF11Q99590 1463 aaKnown RBP22.2■■□□□ 1.14
NUP54-214ENST00000514307 C11orf95C9JLR9 678 aaPredicted RBP22.19■■□□□ 1.14
NUP54-214ENST00000514307 EID1Q9Y6B2 187 aa22.19■■□□□ 1.14
NUP54-214ENST00000514307 PIK3C2GO75747 1445 aa22.19■■□□□ 1.14
NUP54-214ENST00000514307 RIMS2Q9UQ26 1411 aa22.19■■□□□ 1.14
NUP54-214ENST00000514307 LAMC1P11047 1609 aa22.19■■□□□ 1.14
NUP54-214ENST00000514307 KIF7Q2M1P5 1343 aa22.17■■□□□ 1.14
NUP54-214ENST00000514307 KIAA1210Q9ULL0 1709 aa22.17■■□□□ 1.14
NUP54-214ENST00000514307 NEXMIFQ5QGS0 1516 aa22.16■■□□□ 1.14
NUP54-214ENST00000514307 MIER1Q8N108 512 aa22.15■■□□□ 1.14
NUP54-214ENST00000514307 TMEM2Q9UHN6 1383 aa22.14■■□□□ 1.14
NUP54-214ENST00000514307 BCANQ96GW7 911 aa22.14■■□□□ 1.13
NUP54-214ENST00000514307 TMEM132EQ6IEE7 984 aa22.13■■□□□ 1.13
NUP54-214ENST00000514307 TXNDC2Q86VQ3 553 aa22.13■■□□□ 1.13
NUP54-214ENST00000514307 TESK2Q96S53 571 aa22.13■■□□□ 1.13
NUP54-214ENST00000514307 POLR3GLQ9BT43 218 aa22.13■■□□□ 1.13
NUP54-214ENST00000514307 PPLO60437 1756 aa22.12■■□□□ 1.13
NUP54-214ENST00000514307 IFT172Q9UG01 1749 aa22.12■■□□□ 1.13
NUP54-214ENST00000514307 ANP32CO43423 234 aa22.12■■□□□ 1.13
NUP54-214ENST00000514307 TRAK1Q9UPV9 953 aa22.11■■□□□ 1.13
NUP54-214ENST00000514307 SETBP1Q9Y6X0 1596 aa22.1■■□□□ 1.13
NUP54-214ENST00000514307 C3P01024 1663 aa22.09■■□□□ 1.13
NUP54-214ENST00000514307 KDM5AP29375 1690 aaKnown RBP22.07■■□□□ 1.12
NUP54-214ENST00000514307 CENPJQ9HC77 1338 aaPredicted RBP22.07■■□□□ 1.12
NUP54-214ENST00000514307 STK26Q9P289 416 aa22.05■■□□□ 1.12
NUP54-214ENST00000514307 LMTK3Q96Q04 1460 aa22.03■■□□□ 1.12
NUP54-214ENST00000514307 ANKLE2Q86XL3 938 aa22.03■■□□□ 1.12
NUP54-214ENST00000514307 SIRT1Q96EB6 747 aa22.03■■□□□ 1.12
NUP54-214ENST00000514307 POGKQ9P215 609 aa22.03■■□□□ 1.12
NUP54-214ENST00000514307 LTKP29376 864 aa22.02■■□□□ 1.12
NUP54-214ENST00000514307 PUS7Q96PZ0 661 aaKnown RBP22.02■■□□□ 1.12
NUP54-214ENST00000514307 PLEKHG1Q9ULL1 1385 aa22.01■■□□□ 1.11
NUP54-214ENST00000514307 SENP3Q9H4L4 574 aaPredicted RBP22.01■■□□□ 1.11
NUP54-214ENST00000514307 SBNO2Q9Y2G9 1366 aa22■■□□□ 1.11
NUP54-214ENST00000514307 TBX22Q9Y458 520 aa22■■□□□ 1.11
NUP54-214ENST00000514307 ADGRB1O14514 1584 aa21.99■■□□□ 1.11
NUP54-214ENST00000514307 ALKQ9UM73 1620 aa21.98■■□□□ 1.11
NUP54-214ENST00000514307 YTHDC2Q9H6S0 1430 aaKnown RBP21.98■■□□□ 1.11
NUP54-214ENST00000514307 LRPPRCP42704 1394 aaKnown RBP21.98■■□□□ 1.11
NUP54-214ENST00000514307 ABCC11Q96J66 1382 aa21.98■■□□□ 1.11
NUP54-214ENST00000514307 EVC2Q86UK5 1308 aa21.97■■□□□ 1.11
NUP54-214ENST00000514307 IQGAP1P46940 1657 aa21.97■■□□□ 1.11
NUP54-214ENST00000514307 UBR1Q8IWV7 1749 aa21.97■■□□□ 1.11
NUP54-214ENST00000514307 MYO5BQ9ULV0 1848 aa21.96■■□□□ 1.11
NUP54-214ENST00000514307 ARHGAP23Q9P227 1491 aa21.96■■□□□ 1.11
NUP54-214ENST00000514307 SLIT1O75093 1534 aa21.96■■□□□ 1.11
NUP54-214ENST00000514307 CCER2I3L3R5 266 aa21.96■■□□□ 1.11
NUP54-214ENST00000514307 DISP3Q9P2K9 1392 aa21.96■■□□□ 1.11
NUP54-214ENST00000514307 PRAM1Q96QH2 718 aa21.94■■□□□ 1.1
NUP54-214ENST00000514307 HSPA2P54652 639 aa21.93■■□□□ 1.1
NUP54-214ENST00000514307 SETD1BQ9UPS6 1966 aaKnown RBP21.92■■□□□ 1.1
NUP54-214ENST00000514307 PANK3Q9H999 370 aa21.91■■□□□ 1.1
NUP54-214ENST00000514307 SLC26A8Q96RN1 970 aa21.9■■□□□ 1.1
NUP54-214ENST00000514307 METP08581 1390 aa21.89■■□□□ 1.1
NUP54-214ENST00000514307 CEP170BQ9Y4F5 1589 aaPredicted RBP21.89■■□□□ 1.09
NUP54-214ENST00000514307 POLR1AO95602 1720 aaPredicted RBP21.88■■□□□ 1.09
NUP54-214ENST00000514307 MYO3AQ8NEV4 1616 aa21.88■■□□□ 1.09
NUP54-214ENST00000514307 SAFB2Q14151 953 aaKnown RBP eCLIP21.87■■□□□ 1.09
NUP54-214ENST00000514307 PRKRIP1Q9H875 184 aaPredicted RBP21.87■■□□□ 1.09
NUP54-214ENST00000514307 KNSTRNQ9Y448 316 aa21.86■■□□□ 1.09
NUP54-214ENST00000514307 ADAMTS13Q76LX8 1427 aa21.86■■□□□ 1.09
NUP54-214ENST00000514307 KTN1Q86UP2 1357 aaKnown RBP21.85■■□□□ 1.09
NUP54-214ENST00000514307 DLC1Q96QB1 1528 aa21.85■■□□□ 1.09
NUP54-214ENST00000514307 FAM135BQ49AJ0 1406 aa21.84■■□□□ 1.09
NUP54-214ENST00000514307 PER1O15534 1290 aaPredicted RBP21.84■■□□□ 1.09
NUP54-214ENST00000514307 SRPK2P78362 688 aaKnown RBP21.84■■□□□ 1.09
NUP54-214ENST00000514307 RALBP1Q15311 655 aa21.84■■□□□ 1.09
NUP54-214ENST00000514307 WAPLQ7Z5K2 1190 aa21.84■■□□□ 1.09
NUP54-214ENST00000514307 AMOTL2Q9Y2J4 779 aa21.84■■□□□ 1.09
NUP54-214ENST00000514307 PIK3R4Q99570 1358 aa21.84■■□□□ 1.09
NUP54-214ENST00000514307 MED14O60244 1454 aa21.83■■□□□ 1.09
NUP54-214ENST00000514307 MINK1Q8N4C8 1332 aaPredicted RBP21.83■■□□□ 1.09
NUP54-214ENST00000514307 TMC1Q8TDI8 760 aa21.82■■□□□ 1.08
NUP54-214ENST00000514307 CDK19Q9BWU1 502 aa21.82■■□□□ 1.08
NUP54-214ENST00000514307 ASXL1Q8IXJ9 1541 aa21.81■■□□□ 1.08
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms